Wall clock time and date at job start Mon Mar 8 2021 03:49:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42897 * 1 3 3 Si 1.86308 * 109.47291 * 2 1 4 4 C 1.50697 * 109.47390 * 120.00228 * 2 1 3 5 5 C 1.38023 * 120.33303 * 244.98161 * 4 2 1 6 6 N 1.31971 * 120.85419 * 180.02562 * 5 4 2 7 7 C 1.32399 * 121.62708 * 359.97438 * 6 5 4 8 8 N 1.39003 * 119.71135 * 180.28444 * 7 6 5 9 9 C 1.46491 * 120.00072 * 179.72492 * 8 7 6 10 10 H 1.09003 * 112.85311 * 25.33601 * 9 8 7 11 11 C 1.53787 * 113.61489 * 156.53065 * 9 8 7 12 12 C 1.53777 * 87.08045 * 139.98189 * 11 9 8 13 13 H 1.08999 * 113.61737 * 89.11843 * 12 11 9 14 14 N 1.46503 * 113.60916 * 219.93531 * 12 11 9 15 15 C 1.34787 * 119.99814 * 205.00080 * 14 12 11 16 16 O 1.21507 * 119.99499 * 0.02562 * 15 14 12 17 17 O 1.34637 * 119.99930 * 180.02562 * 15 14 12 18 18 C 1.45197 * 116.99483 * 179.97438 * 17 15 14 19 19 C 1.50705 * 109.46707 * 180.02562 * 18 17 15 20 20 C 1.38244 * 119.99667 * 269.72621 * 19 18 17 21 21 C 1.38233 * 119.99542 * 179.78680 * 20 19 18 22 22 C 1.38236 * 120.00193 * 0.46744 * 21 20 19 23 23 C 1.38233 * 120.00117 * 359.76065 * 22 21 20 24 24 C 1.38231 * 120.00236 * 90.00119 * 19 18 17 25 25 C 1.53782 * 113.61810 * 254.13428 * 9 8 7 26 26 C 1.39145 * 120.58327 * 0.02562 * 7 6 5 27 27 C 1.38298 * 119.09801 * 0.02562 * 26 7 6 28 28 H 0.96701 * 113.99804 * 299.99890 * 1 2 3 29 29 H 1.08997 * 109.47211 * 240.00346 * 2 1 3 30 30 H 1.48495 * 109.99714 * 300.00122 * 3 2 1 31 31 H 1.48505 * 109.99639 * 61.32050 * 3 2 1 32 32 H 1.07997 * 119.57359 * 0.02562 * 5 4 2 33 33 H 0.96998 * 119.99570 * 359.72952 * 8 7 6 34 34 H 1.08997 * 113.60981 * 254.53116 * 11 9 8 35 35 H 1.08998 * 113.61369 * 25.43073 * 11 9 8 36 36 H 0.96992 * 120.00125 * 25.00096 * 14 12 11 37 37 H 1.08996 * 109.47450 * 300.00018 * 18 17 15 38 38 H 1.09000 * 109.47081 * 60.00361 * 18 17 15 39 39 H 1.07992 * 119.99923 * 0.02562 * 20 19 18 40 40 H 1.08005 * 119.99712 * 180.25133 * 21 20 19 41 41 H 1.07999 * 119.99938 * 179.79236 * 22 21 20 42 42 H 1.07997 * 120.00311 * 180.02562 * 23 22 21 43 43 H 1.08005 * 120.00007 * 359.97438 * 24 19 18 44 44 H 1.09003 * 113.61477 * 334.57407 * 25 9 8 45 45 H 1.09001 * 113.61336 * 105.46513 * 25 9 8 46 46 H 1.07999 * 120.44651 * 180.02562 * 26 7 6 47 47 H 1.07999 * 120.74519 * 180.02562 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7565 0.0000 4 6 1.9314 -0.7104 1.2304 5 6 2.6387 -0.0202 2.1938 6 7 3.0839 -0.6322 3.2750 7 6 2.8718 -1.9230 3.4792 8 7 3.3537 -2.5260 4.6352 9 6 3.1175 -3.9525 4.8703 10 1 2.9687 -4.5146 3.9483 11 6 4.1355 -4.5961 5.8266 12 6 2.9561 -5.3755 6.4317 13 1 2.7621 -6.3273 5.9372 14 7 3.0183 -5.4946 7.8906 15 6 2.3962 -6.5171 8.5104 16 8 1.7844 -7.3404 7.8590 17 8 2.4529 -6.6263 9.8511 18 6 1.7593 -7.7522 10.4506 19 6 1.9318 -7.7093 11.9471 20 6 3.0005 -8.3568 12.5385 21 6 3.1611 -8.3138 13.9108 22 6 2.2478 -7.6314 14.6926 23 6 1.1766 -6.9880 14.1016 24 6 1.0183 -7.0274 12.7289 25 6 2.0498 -4.2319 5.9412 26 6 2.1662 -2.6803 2.5492 27 6 1.6882 -2.0665 1.4058 28 1 -0.3933 0.4417 0.7651 29 1 1.7923 -0.5138 -0.8900 30 1 1.5615 2.4679 -1.2085 31 1 1.5879 2.4585 1.2243 32 1 2.8304 1.0343 2.0612 33 1 3.8463 -2.0022 5.2862 34 1 4.8661 -5.2301 5.3242 35 1 4.5924 -3.8886 6.5185 36 1 3.5070 -4.8376 8.4104 37 1 0.6986 -7.6978 10.2058 38 1 2.1743 -8.6827 10.0632 39 1 3.7119 -8.8929 11.9281 40 1 3.9983 -8.8162 14.3725 41 1 2.3715 -7.6006 15.7650 42 1 0.4632 -6.4545 14.7123 43 1 0.1811 -6.5249 12.2672 44 1 1.9352 -3.4246 6.6646 45 1 1.0988 -4.5722 5.5313 46 1 1.9941 -3.7330 2.7182 47 1 1.1369 -2.6287 0.6667 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_12109460_13915762.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 03:49:27 Heat of formation + Delta-G solvation = -5.807094 kcal Electronic energy + Delta-G solvation = -29232.381563 eV Core-core repulsion = 24961.961123 eV Total energy + Delta-G solvation = -4270.420440 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 356.157 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.81252 -41.37763 -40.46774 -39.92511 -38.05287 -37.40264 -35.91096 -34.25783 -33.35529 -32.99360 -31.92340 -31.16650 -27.75079 -27.03502 -26.73017 -25.21346 -24.68206 -23.61211 -22.93603 -22.33138 -22.02959 -21.33618 -19.67580 -18.94314 -18.51862 -18.31720 -17.81791 -17.55908 -17.33323 -16.66362 -16.52736 -16.41327 -16.19911 -16.10776 -16.01153 -15.38554 -15.27976 -14.89973 -14.65653 -14.49708 -14.32398 -14.28657 -14.02979 -13.93923 -13.78407 -13.69200 -13.35049 -13.31204 -12.65935 -12.48400 -12.39291 -12.23884 -12.14854 -12.12162 -11.92013 -11.62476 -11.57899 -11.15222 -10.76455 -10.52929 -10.36883 -10.28902 -9.93109 -9.91248 -8.74676 -4.95248 0.09039 0.23158 0.39458 0.41725 1.22383 1.30485 1.59539 1.77950 1.97468 2.03489 2.73685 2.81320 3.10825 3.24086 3.28892 3.40673 3.51817 3.61398 3.66711 3.71120 3.76253 3.77198 3.96370 3.99784 4.05848 4.13274 4.18395 4.23942 4.31249 4.34631 4.40710 4.41924 4.48966 4.56402 4.61997 4.63297 4.73241 4.77321 4.84872 4.92305 5.00652 5.01552 5.24796 5.31991 5.33024 5.44247 5.50043 5.50808 5.51480 5.94903 5.95088 6.29488 6.42430 6.47811 7.13711 7.28928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.532 6.532 2 C -0.059 4.059 3 Si 0.679 3.321 4 C -0.233 4.233 5 C 0.155 3.845 6 N -0.539 5.539 7 C 0.408 3.592 8 N -0.710 5.710 9 C 0.135 3.865 10 H 0.117 0.883 11 C -0.151 4.151 12 C 0.143 3.857 13 H 0.125 0.875 14 N -0.698 5.698 15 C 0.648 3.352 16 O -0.570 6.570 17 O -0.365 6.365 18 C 0.131 3.869 19 C -0.103 4.103 20 C -0.093 4.093 21 C -0.123 4.123 22 C -0.107 4.107 23 C -0.123 4.123 24 C -0.093 4.093 25 C -0.170 4.170 26 C -0.238 4.238 27 C -0.005 4.005 28 H 0.375 0.625 29 H 0.117 0.883 30 H -0.256 1.256 31 H -0.259 1.259 32 H 0.155 0.845 33 H 0.407 0.593 34 H 0.090 0.910 35 H 0.096 0.904 36 H 0.408 0.592 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.125 0.875 40 H 0.127 0.873 41 H 0.126 0.874 42 H 0.127 0.873 43 H 0.125 0.875 44 H 0.093 0.907 45 H 0.082 0.918 46 H 0.134 0.866 47 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.347 -0.335 2.162 3.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.338 6.338 2 C -0.170 4.170 3 Si 0.581 3.419 4 C -0.238 4.238 5 C -0.003 4.003 6 N -0.256 5.256 7 C 0.172 3.828 8 N -0.341 5.341 9 C 0.028 3.972 10 H 0.134 0.866 11 C -0.190 4.190 12 C 0.038 3.962 13 H 0.143 0.857 14 N -0.356 5.356 15 C 0.402 3.598 16 O -0.458 6.458 17 O -0.279 6.279 18 C 0.057 3.943 19 C -0.103 4.103 20 C -0.111 4.111 21 C -0.141 4.141 22 C -0.125 4.125 23 C -0.141 4.141 24 C -0.111 4.111 25 C -0.211 4.211 26 C -0.263 4.263 27 C -0.031 4.031 28 H 0.223 0.777 29 H 0.134 0.866 30 H -0.181 1.181 31 H -0.184 1.184 32 H 0.172 0.828 33 H 0.243 0.757 34 H 0.109 0.891 35 H 0.115 0.885 36 H 0.244 0.756 37 H 0.100 0.900 38 H 0.100 0.900 39 H 0.143 0.857 40 H 0.145 0.855 41 H 0.144 0.856 42 H 0.145 0.855 43 H 0.143 0.857 44 H 0.112 0.888 45 H 0.100 0.900 46 H 0.152 0.848 47 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 3.317 -0.009 1.988 3.867 hybrid contribution -1.190 -0.216 0.523 1.318 sum 2.127 -0.225 2.510 3.298 Atomic orbital electron populations 1.86597 1.17969 1.79927 1.49309 1.24759 0.83686 1.10578 0.97992 0.95123 0.91666 0.74728 0.80396 1.20930 1.06894 0.95990 0.99964 1.22271 0.91338 0.99044 0.87640 1.67160 1.25857 1.08976 1.23618 1.18421 0.89183 0.88485 0.86670 1.44409 1.60476 1.08604 1.20625 1.22248 0.96085 0.81036 0.97802 0.86575 1.23787 0.97295 0.99489 0.98437 1.22343 0.96556 0.99539 0.77768 0.85703 1.44599 1.55981 1.27830 1.07183 1.18181 0.78789 0.81849 0.81028 1.91023 1.46075 1.42868 1.65868 1.86313 1.71382 1.50056 1.20180 1.21752 0.97226 0.86906 0.88461 1.19497 0.96999 1.00679 0.93107 1.21121 0.96422 0.98418 0.95184 1.21213 0.99599 0.99653 0.93662 1.21312 0.94360 0.96530 1.00276 1.21212 0.98366 0.99840 0.94713 1.21121 0.98756 0.97319 0.93951 1.24179 0.99328 0.98739 0.98822 1.21494 1.06592 1.01385 0.96802 1.21209 0.93047 0.93421 0.95392 0.77730 0.86567 1.18051 1.18364 0.82803 0.75666 0.89134 0.88512 0.75604 0.90035 0.89997 0.85688 0.85529 0.85634 0.85541 0.85716 0.88835 0.89958 0.84790 0.84625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -0.65 12.84 -35.23 -0.45 -1.10 16 2 C -0.06 0.02 2.82 36.00 0.10 0.12 16 3 Si 0.68 -0.65 29.91 -169.99 -5.08 -5.73 16 4 C -0.23 -0.08 5.36 -104.46 -0.56 -0.64 16 5 C 0.15 0.15 9.84 -17.57 -0.17 -0.02 16 6 N -0.54 -1.23 10.39 -12.44 -0.13 -1.36 16 7 C 0.41 0.41 7.65 -155.02 -1.19 -0.78 16 8 N -0.71 0.97 5.53 -53.14 -0.29 0.68 16 9 C 0.14 -0.42 3.98 -67.12 -0.27 -0.69 16 10 H 0.12 -0.43 6.17 -51.93 -0.32 -0.75 16 11 C -0.15 0.61 7.58 -25.92 -0.20 0.42 16 12 C 0.14 -0.31 4.24 -67.03 -0.28 -0.59 16 13 H 0.13 -0.13 7.46 -51.93 -0.39 -0.52 16 14 N -0.70 0.69 5.37 -57.85 -0.31 0.38 16 15 C 0.65 1.53 8.75 54.06 0.47 2.00 16 16 O -0.57 -3.06 15.73 -19.28 -0.30 -3.37 16 17 O -0.37 -0.73 10.25 -40.32 -0.41 -1.15 16 18 C 0.13 0.15 5.60 36.01 0.20 0.35 16 19 C -0.10 -0.10 5.52 -104.62 -0.58 -0.68 16 20 C -0.09 -0.05 9.70 -39.58 -0.38 -0.43 16 21 C -0.12 0.00 10.05 -39.58 -0.40 -0.40 16 22 C -0.11 0.01 10.05 -39.58 -0.40 -0.39 16 23 C -0.12 -0.01 10.05 -39.58 -0.40 -0.41 16 24 C -0.09 -0.05 9.70 -39.58 -0.38 -0.44 16 25 C -0.17 0.39 7.69 -25.83 -0.20 0.20 16 26 C -0.24 -0.03 9.28 -39.22 -0.36 -0.39 16 27 C 0.00 0.00 9.84 -39.32 -0.39 -0.39 16 28 H 0.38 -0.52 8.70 45.56 0.40 -0.13 16 29 H 0.12 -0.13 7.96 -51.93 -0.41 -0.54 16 30 H -0.26 -0.59 7.11 56.52 0.40 -0.19 16 31 H -0.26 -0.25 7.01 56.52 0.40 0.14 16 32 H 0.16 -0.12 4.85 -52.49 -0.25 -0.37 16 33 H 0.41 -0.76 8.84 -40.82 -0.36 -1.13 16 34 H 0.09 -0.39 8.14 -51.93 -0.42 -0.81 16 35 H 0.10 -0.47 8.09 -51.93 -0.42 -0.89 16 36 H 0.41 -1.22 8.84 -40.82 -0.36 -1.58 16 37 H 0.08 0.07 8.08 -51.93 -0.42 -0.35 16 38 H 0.08 0.06 8.08 -51.93 -0.42 -0.36 16 39 H 0.13 -0.11 8.06 -52.49 -0.42 -0.54 16 40 H 0.13 -0.23 8.06 -52.48 -0.42 -0.65 16 41 H 0.13 -0.24 8.06 -52.49 -0.42 -0.66 16 42 H 0.13 -0.22 8.06 -52.49 -0.42 -0.64 16 43 H 0.12 -0.09 8.06 -52.48 -0.42 -0.52 16 44 H 0.09 -0.17 8.14 -51.93 -0.42 -0.60 16 45 H 0.08 -0.12 8.14 -51.93 -0.42 -0.55 16 46 H 0.13 -0.24 6.06 -52.49 -0.32 -0.55 16 47 H 0.14 -0.11 8.06 -52.49 -0.42 -0.53 16 LS Contribution 397.73 15.07 5.99 5.99 Total: 0.00 -8.86 397.73 -12.66 -21.51 By element: Atomic # 1 Polarization: -6.41 SS G_CDS: -6.29 Total: -12.70 kcal Atomic # 6 Polarization: 2.22 SS G_CDS: -5.38 Total: -3.16 kcal Atomic # 7 Polarization: 0.43 SS G_CDS: -0.73 Total: -0.30 kcal Atomic # 8 Polarization: -4.45 SS G_CDS: -1.17 Total: -5.61 kcal Atomic # 14 Polarization: -0.65 SS G_CDS: -5.08 Total: -5.73 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -8.86 -12.66 -21.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12109460_13915762.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.708 kcal (2) G-P(sol) polarization free energy of solvation -8.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds