Wall clock time and date at job start Mon Mar 8 2021 03:49:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42897 * 1 3 3 Si 1.86308 * 109.47291 * 2 1 4 4 C 1.50697 * 109.47390 * 120.00228 * 2 1 3 5 5 C 1.38023 * 120.33303 * 244.98161 * 4 2 1 6 6 N 1.31971 * 120.85419 * 180.02562 * 5 4 2 7 7 C 1.32399 * 121.62708 * 359.97438 * 6 5 4 8 8 N 1.39003 * 119.71135 * 180.28444 * 7 6 5 9 9 C 1.46491 * 120.00072 * 179.72492 * 8 7 6 10 10 H 1.09003 * 112.85311 * 25.33601 * 9 8 7 11 11 C 1.53787 * 113.61489 * 156.53065 * 9 8 7 12 12 C 1.53777 * 87.08045 * 139.98189 * 11 9 8 13 13 H 1.08999 * 113.61737 * 89.11843 * 12 11 9 14 14 N 1.46503 * 113.60916 * 219.93531 * 12 11 9 15 15 C 1.34787 * 119.99814 * 205.00080 * 14 12 11 16 16 O 1.21507 * 119.99499 * 0.02562 * 15 14 12 17 17 O 1.34637 * 119.99930 * 180.02562 * 15 14 12 18 18 C 1.45197 * 116.99483 * 179.97438 * 17 15 14 19 19 C 1.50705 * 109.46707 * 180.02562 * 18 17 15 20 20 C 1.38244 * 119.99667 * 269.72621 * 19 18 17 21 21 C 1.38233 * 119.99542 * 179.78680 * 20 19 18 22 22 C 1.38236 * 120.00193 * 0.46744 * 21 20 19 23 23 C 1.38233 * 120.00117 * 359.76065 * 22 21 20 24 24 C 1.38231 * 120.00236 * 90.00119 * 19 18 17 25 25 C 1.53782 * 113.61810 * 254.13428 * 9 8 7 26 26 C 1.39145 * 120.58327 * 0.02562 * 7 6 5 27 27 C 1.38298 * 119.09801 * 0.02562 * 26 7 6 28 28 H 0.96701 * 113.99804 * 299.99890 * 1 2 3 29 29 H 1.08997 * 109.47211 * 240.00346 * 2 1 3 30 30 H 1.48495 * 109.99714 * 300.00122 * 3 2 1 31 31 H 1.48505 * 109.99639 * 61.32050 * 3 2 1 32 32 H 1.07997 * 119.57359 * 0.02562 * 5 4 2 33 33 H 0.96998 * 119.99570 * 359.72952 * 8 7 6 34 34 H 1.08997 * 113.60981 * 254.53116 * 11 9 8 35 35 H 1.08998 * 113.61369 * 25.43073 * 11 9 8 36 36 H 0.96992 * 120.00125 * 25.00096 * 14 12 11 37 37 H 1.08996 * 109.47450 * 300.00018 * 18 17 15 38 38 H 1.09000 * 109.47081 * 60.00361 * 18 17 15 39 39 H 1.07992 * 119.99923 * 0.02562 * 20 19 18 40 40 H 1.08005 * 119.99712 * 180.25133 * 21 20 19 41 41 H 1.07999 * 119.99938 * 179.79236 * 22 21 20 42 42 H 1.07997 * 120.00311 * 180.02562 * 23 22 21 43 43 H 1.08005 * 120.00007 * 359.97438 * 24 19 18 44 44 H 1.09003 * 113.61477 * 334.57407 * 25 9 8 45 45 H 1.09001 * 113.61336 * 105.46513 * 25 9 8 46 46 H 1.07999 * 120.44651 * 180.02562 * 26 7 6 47 47 H 1.07999 * 120.74519 * 180.02562 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7565 0.0000 4 6 1.9314 -0.7104 1.2304 5 6 2.6387 -0.0202 2.1938 6 7 3.0839 -0.6322 3.2750 7 6 2.8718 -1.9230 3.4792 8 7 3.3537 -2.5260 4.6352 9 6 3.1175 -3.9525 4.8703 10 1 2.9687 -4.5146 3.9483 11 6 4.1355 -4.5961 5.8266 12 6 2.9561 -5.3755 6.4317 13 1 2.7621 -6.3273 5.9372 14 7 3.0183 -5.4946 7.8906 15 6 2.3962 -6.5171 8.5104 16 8 1.7844 -7.3404 7.8590 17 8 2.4529 -6.6263 9.8511 18 6 1.7593 -7.7522 10.4506 19 6 1.9318 -7.7093 11.9471 20 6 3.0005 -8.3568 12.5385 21 6 3.1611 -8.3138 13.9108 22 6 2.2478 -7.6314 14.6926 23 6 1.1766 -6.9880 14.1016 24 6 1.0183 -7.0274 12.7289 25 6 2.0498 -4.2319 5.9412 26 6 2.1662 -2.6803 2.5492 27 6 1.6882 -2.0665 1.4058 28 1 -0.3933 0.4417 0.7651 29 1 1.7923 -0.5138 -0.8900 30 1 1.5615 2.4679 -1.2085 31 1 1.5879 2.4585 1.2243 32 1 2.8304 1.0343 2.0612 33 1 3.8463 -2.0022 5.2862 34 1 4.8661 -5.2301 5.3242 35 1 4.5924 -3.8886 6.5185 36 1 3.5070 -4.8376 8.4104 37 1 0.6986 -7.6978 10.2058 38 1 2.1743 -8.6827 10.0632 39 1 3.7119 -8.8929 11.9281 40 1 3.9983 -8.8162 14.3725 41 1 2.3715 -7.6006 15.7650 42 1 0.4632 -6.4545 14.7123 43 1 0.1811 -6.5249 12.2672 44 1 1.9352 -3.4246 6.6646 45 1 1.0988 -4.5722 5.5313 46 1 1.9941 -3.7330 2.7182 47 1 1.1369 -2.6287 0.6667 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_12109460_13915762.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 03:49:26 Heat of formation + Delta-G solvation = -4.755335 kcal Electronic energy + Delta-G solvation = -29232.335955 eV Core-core repulsion = 24961.961123 eV Total energy + Delta-G solvation = -4270.374832 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 356.157 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.83990 -41.40833 -40.40562 -39.89577 -38.07460 -37.52814 -35.92430 -34.26098 -33.35924 -32.98829 -31.88933 -31.13350 -27.77150 -26.82598 -26.69460 -25.14926 -24.67520 -23.58197 -22.95911 -22.31650 -22.07220 -21.21559 -19.70939 -18.89849 -18.50489 -18.35287 -17.77422 -17.68005 -17.36004 -16.61548 -16.45767 -16.36204 -16.19354 -16.09234 -16.01945 -15.33662 -15.23326 -14.83825 -14.70398 -14.48227 -14.34501 -14.27383 -14.01058 -13.95249 -13.70397 -13.53135 -13.37437 -13.33778 -12.57264 -12.39246 -12.29191 -12.19815 -12.11244 -12.09329 -11.98934 -11.74249 -11.73185 -11.06748 -10.76637 -10.53632 -10.38929 -10.26739 -9.91328 -9.90650 -8.68723 -4.90799 0.08413 0.23233 0.41287 0.41427 1.20666 1.34211 1.60454 1.61967 1.96822 2.13129 2.75816 2.81665 3.20349 3.36376 3.44882 3.47967 3.61298 3.68446 3.75487 3.79483 3.80029 3.84561 4.01840 4.04645 4.09714 4.18139 4.20781 4.24952 4.36757 4.43946 4.54183 4.60935 4.63007 4.65309 4.66668 4.78014 4.86222 4.89134 4.95483 4.99120 5.03708 5.06553 5.25237 5.32589 5.39281 5.47063 5.51792 5.54309 5.55825 5.99175 6.04116 6.28194 6.50273 6.56198 7.15469 7.19571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.550 6.550 2 C -0.064 4.064 3 Si 0.757 3.243 4 C -0.234 4.234 5 C 0.144 3.856 6 N -0.564 5.564 7 C 0.396 3.604 8 N -0.704 5.704 9 C 0.138 3.862 10 H 0.125 0.875 11 C -0.135 4.135 12 C 0.137 3.863 13 H 0.114 0.886 14 N -0.683 5.683 15 C 0.644 3.356 16 O -0.605 6.605 17 O -0.368 6.368 18 C 0.131 3.869 19 C -0.114 4.114 20 C -0.105 4.105 21 C -0.131 4.131 22 C -0.114 4.114 23 C -0.132 4.132 24 C -0.106 4.106 25 C -0.167 4.167 26 C -0.242 4.242 27 C -0.013 4.013 28 H 0.384 0.616 29 H 0.126 0.874 30 H -0.301 1.301 31 H -0.284 1.284 32 H 0.165 0.835 33 H 0.409 0.591 34 H 0.100 0.900 35 H 0.110 0.890 36 H 0.419 0.581 37 H 0.079 0.921 38 H 0.082 0.918 39 H 0.134 0.866 40 H 0.143 0.857 41 H 0.144 0.856 42 H 0.142 0.858 43 H 0.132 0.868 44 H 0.091 0.909 45 H 0.072 0.928 46 H 0.151 0.849 47 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.197 -0.425 2.649 4.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.358 6.358 2 C -0.174 4.174 3 Si 0.663 3.337 4 C -0.239 4.239 5 C -0.013 4.013 6 N -0.282 5.282 7 C 0.160 3.840 8 N -0.335 5.335 9 C 0.032 3.968 10 H 0.142 0.858 11 C -0.173 4.173 12 C 0.033 3.967 13 H 0.132 0.868 14 N -0.342 5.342 15 C 0.397 3.603 16 O -0.497 6.497 17 O -0.282 6.282 18 C 0.057 3.943 19 C -0.114 4.114 20 C -0.123 4.123 21 C -0.149 4.149 22 C -0.132 4.132 23 C -0.149 4.149 24 C -0.124 4.124 25 C -0.208 4.208 26 C -0.266 4.266 27 C -0.038 4.038 28 H 0.233 0.767 29 H 0.143 0.857 30 H -0.229 1.229 31 H -0.211 1.211 32 H 0.182 0.818 33 H 0.246 0.754 34 H 0.118 0.882 35 H 0.128 0.872 36 H 0.257 0.743 37 H 0.098 0.902 38 H 0.100 0.900 39 H 0.152 0.848 40 H 0.161 0.839 41 H 0.161 0.839 42 H 0.160 0.840 43 H 0.150 0.850 44 H 0.109 0.891 45 H 0.091 0.909 46 H 0.168 0.832 47 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 4.196 -0.097 2.500 4.885 hybrid contribution -1.488 -0.169 0.401 1.551 sum 2.707 -0.266 2.900 3.977 Atomic orbital electron populations 1.86567 1.18811 1.80293 1.50103 1.24910 0.83079 1.11152 0.98213 0.94210 0.90464 0.72601 0.76423 1.20953 1.06834 0.96143 0.99967 1.22478 0.91543 0.99628 0.87639 1.67163 1.26853 1.09796 1.24345 1.18673 0.89472 0.88400 0.87486 1.44472 1.59965 1.09114 1.19969 1.22310 0.96079 0.80328 0.98122 0.85756 1.23716 0.96556 0.99122 0.97936 1.22416 0.97999 0.99301 0.76986 0.86811 1.44639 1.54908 1.26939 1.07709 1.18430 0.78757 0.82156 0.80963 1.90994 1.47814 1.44386 1.66471 1.86315 1.71442 1.50366 1.20066 1.21780 0.97064 0.86725 0.88766 1.19571 0.97605 1.01373 0.92892 1.21327 0.96577 0.98595 0.95785 1.21488 1.00187 0.99652 0.93543 1.21617 0.94133 0.96123 1.01332 1.21478 0.98852 0.99924 0.94691 1.21316 0.99060 0.97569 0.94455 1.24134 0.99152 0.98440 0.99034 1.21699 1.06185 1.02194 0.96528 1.21417 0.93084 0.93575 0.95751 0.76680 0.85650 1.22866 1.21079 0.81832 0.75398 0.88154 0.87219 0.74306 0.90236 0.90005 0.84810 0.83873 0.83857 0.83989 0.85022 0.89086 0.90876 0.83170 0.83706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -1.40 12.84 -148.98 -1.91 -3.31 16 2 C -0.06 0.04 2.82 71.24 0.20 0.24 16 3 Si 0.76 -1.19 29.91 68.60 2.05 0.86 16 4 C -0.23 -0.15 5.36 -19.76 -0.11 -0.25 16 5 C 0.14 0.30 9.84 84.62 0.83 1.13 16 6 N -0.56 -2.62 10.39 -193.26 -2.01 -4.63 16 7 C 0.40 0.69 7.65 133.07 1.02 1.71 16 8 N -0.70 2.34 5.53 -322.04 -1.78 0.56 16 9 C 0.14 -0.96 3.98 45.52 0.18 -0.78 16 10 H 0.12 -1.04 6.17 -2.39 -0.01 -1.06 16 11 C -0.13 1.25 7.58 31.12 0.24 1.49 16 12 C 0.14 -0.61 4.24 45.57 0.19 -0.42 16 13 H 0.11 -0.18 7.46 -2.39 -0.02 -0.20 16 14 N -0.68 1.33 5.37 -567.32 -3.04 -1.72 16 15 C 0.64 3.56 8.75 129.79 1.14 4.70 16 16 O -0.61 -7.33 15.73 19.82 0.31 -7.01 16 17 O -0.37 -1.79 10.25 -55.47 -0.57 -2.36 16 18 C 0.13 0.45 5.60 71.24 0.40 0.85 16 19 C -0.11 -0.31 5.52 -19.86 -0.11 -0.42 16 20 C -0.10 -0.14 9.70 22.27 0.22 0.08 16 21 C -0.13 0.04 10.05 22.27 0.22 0.26 16 22 C -0.11 0.08 10.05 22.27 0.22 0.30 16 23 C -0.13 0.00 10.05 22.27 0.22 0.23 16 24 C -0.11 -0.17 9.70 22.27 0.22 0.04 16 25 C -0.17 0.79 7.69 31.18 0.24 1.03 16 26 C -0.24 0.05 9.28 22.50 0.21 0.25 16 27 C -0.01 0.00 9.84 22.44 0.22 0.22 16 28 H 0.38 -0.94 8.70 -74.06 -0.64 -1.59 16 29 H 0.13 -0.34 7.96 -2.39 -0.02 -0.36 16 30 H -0.30 -1.79 7.11 99.48 0.71 -1.09 16 31 H -0.28 -0.71 7.01 99.48 0.70 -0.01 16 32 H 0.17 -0.22 4.85 -2.91 -0.01 -0.24 16 33 H 0.41 -1.79 8.84 -92.71 -0.82 -2.61 16 34 H 0.10 -1.04 8.14 -2.39 -0.02 -1.06 16 35 H 0.11 -1.26 8.09 -2.39 -0.02 -1.28 16 36 H 0.42 -2.71 8.84 -92.71 -0.82 -3.53 16 37 H 0.08 0.27 8.08 -2.39 -0.02 0.25 16 38 H 0.08 0.24 8.08 -2.39 -0.02 0.22 16 39 H 0.13 -0.19 8.06 -2.91 -0.02 -0.21 16 40 H 0.14 -0.62 8.06 -2.91 -0.02 -0.65 16 41 H 0.14 -0.71 8.06 -2.91 -0.02 -0.73 16 42 H 0.14 -0.56 8.06 -2.91 -0.02 -0.58 16 43 H 0.13 -0.10 8.06 -2.91 -0.02 -0.12 16 44 H 0.09 -0.35 8.14 -2.39 -0.02 -0.37 16 45 H 0.07 -0.18 8.14 -2.39 -0.02 -0.20 16 46 H 0.15 -0.65 6.06 -2.91 -0.02 -0.67 16 47 H 0.15 -0.30 8.06 -2.91 -0.02 -0.33 16 Total: 0.00 -20.95 397.73 -2.42 -23.37 By element: Atomic # 1 Polarization: -15.19 SS G_CDS: -1.22 Total: -16.40 kcal Atomic # 6 Polarization: 4.90 SS G_CDS: 5.75 Total: 10.65 kcal Atomic # 7 Polarization: 1.04 SS G_CDS: -6.83 Total: -5.79 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: -2.17 Total: -12.69 kcal Atomic # 14 Polarization: -1.19 SS G_CDS: 2.05 Total: 0.86 kcal Total: -20.95 -2.42 -23.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12109460_13915762.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.615 kcal (2) G-P(sol) polarization free energy of solvation -20.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds