Wall clock time and date at job start Mon Mar 8 2021 03:49:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86301 * 109.47170 * 2 1 4 4 C 1.50700 * 109.47324 * 240.00033 * 2 1 3 5 5 C 1.33332 * 125.95095 * 300.00451 * 4 2 1 6 6 N 1.32126 * 114.57816 * 179.97438 * 5 4 2 7 7 C 1.29683 * 116.86274 * 359.97438 * 6 5 4 8 8 N 1.38614 * 124.94251 * 179.97438 * 7 6 5 9 9 C 1.46502 * 120.00178 * 0.29516 * 8 7 6 10 10 H 1.09001 * 112.84666 * 46.33834 * 9 8 7 11 11 C 1.53782 * 113.61399 * 177.63884 * 9 8 7 12 12 C 1.53781 * 87.08032 * 89.11646 * 11 9 8 13 13 H 1.08998 * 113.61463 * 139.97957 * 12 11 9 14 14 N 1.46497 * 113.61818 * 270.88282 * 12 11 9 15 15 C 1.34774 * 120.00467 * 255.63141 * 14 12 11 16 16 O 1.21518 * 119.99486 * 359.97438 * 15 14 12 17 17 O 1.34631 * 120.00732 * 179.97438 * 15 14 12 18 18 C 1.45199 * 117.00578 * 179.97438 * 17 15 14 19 19 C 1.50699 * 109.47270 * 179.97438 * 18 17 15 20 20 C 1.38239 * 120.00025 * 269.72796 * 19 18 17 21 21 C 1.38233 * 119.99623 * 179.79153 * 20 19 18 22 22 C 1.38236 * 120.00061 * 0.43623 * 21 20 19 23 23 C 1.38236 * 119.99966 * 359.81707 * 22 21 20 24 24 C 1.38231 * 119.99764 * 90.00180 * 19 18 17 25 25 C 1.53774 * 113.61607 * 275.13757 * 9 8 7 26 26 S 1.70963 * 110.10626 * 0.24274 * 7 6 5 27 27 H 0.96694 * 113.99671 * 300.00293 * 1 2 3 28 28 H 1.09004 * 109.47105 * 120.00231 * 2 1 3 29 29 H 1.48502 * 109.99948 * 178.67774 * 3 2 1 30 30 H 1.48494 * 110.00091 * 299.99838 * 3 2 1 31 31 H 1.07993 * 122.70742 * 359.97378 * 5 4 2 32 32 H 0.97004 * 119.99782 * 180.02562 * 8 7 6 33 33 H 1.08997 * 113.61350 * 203.67022 * 11 9 8 34 34 H 1.09000 * 113.61560 * 334.57326 * 11 9 8 35 35 H 0.97004 * 119.99878 * 75.62672 * 14 12 11 36 36 H 1.08998 * 109.46975 * 300.00288 * 18 17 15 37 37 H 1.09006 * 109.46920 * 60.00021 * 18 17 15 38 38 H 1.08002 * 120.00071 * 0.02562 * 20 19 18 39 39 H 1.07999 * 119.99967 * 180.28010 * 21 20 19 40 40 H 1.08000 * 119.99685 * 179.83791 * 22 21 20 41 41 H 1.08007 * 119.99826 * 179.97438 * 23 22 21 42 42 H 1.08006 * 120.00525 * 359.97438 * 24 19 18 43 43 H 1.09003 * 113.61325 * 25.42930 * 25 9 8 44 44 H 1.08995 * 113.61682 * 156.33454 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7104 -1.2305 5 6 1.6835 -1.9788 -1.5581 6 7 2.2377 -2.3722 -2.6911 7 6 2.9416 -1.4937 -3.3351 8 7 3.5948 -1.7251 -4.5356 9 6 3.5124 -3.0419 -5.1725 10 1 2.4964 -3.4357 -5.2003 11 6 4.2422 -3.1193 -6.5238 12 6 5.4984 -3.5213 -5.7332 13 1 6.0861 -4.3027 -6.2150 14 7 6.3107 -2.3808 -5.3023 15 6 7.4612 -2.0927 -5.9425 16 8 7.8250 -2.7792 -6.8768 17 8 8.2074 -1.0442 -5.5469 18 6 9.4343 -0.7935 -6.2818 19 6 10.1305 0.4104 -5.7014 20 6 9.8561 1.6722 -6.1949 21 6 10.4916 2.7769 -5.6595 22 6 11.4082 2.6189 -4.6368 23 6 11.6864 1.3566 -4.1470 24 6 11.0478 0.2523 -4.6794 25 6 4.5487 -4.0477 -4.6442 26 16 2.9526 -0.0110 -2.4840 27 1 -0.3932 0.4417 0.7650 28 1 1.7924 -0.5139 0.8900 29 1 3.5346 1.7703 0.0322 30 1 1.5616 2.4679 -1.2085 31 1 1.0786 -2.6319 -0.9467 32 1 4.1033 -1.0140 -4.9560 33 1 3.8674 -3.9065 -7.1780 34 1 4.3326 -2.1567 -7.0271 35 1 6.0204 -1.8330 -4.5563 36 1 10.0873 -1.6630 -6.2061 37 1 9.1984 -0.6064 -7.3295 38 1 9.1424 1.7953 -6.9961 39 1 10.2739 3.7632 -6.0419 40 1 11.9066 3.4818 -4.2204 41 1 12.4029 1.2331 -3.3482 42 1 11.2652 -0.7339 -4.2966 43 1 4.8865 -3.8344 -3.6300 44 1 4.2578 -5.0887 -4.7845 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_12109460_15704118.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 03:49:29 Heat of formation + Delta-G solvation = 10.499050 kcal Electronic energy + Delta-G solvation = -28923.394756 eV Core-core repulsion = 24742.833649 eV Total energy + Delta-G solvation = -4180.561106 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 362.113 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.03158 -41.09501 -40.37686 -39.92639 -37.83225 -37.55256 -35.65839 -34.27053 -33.04928 -31.92798 -31.41138 -27.83544 -27.15156 -26.68047 -25.81841 -24.40094 -23.62114 -22.99907 -22.28448 -21.39496 -20.72860 -19.82159 -19.43543 -18.43883 -18.32295 -17.83541 -17.69130 -17.46873 -16.81612 -16.57943 -16.18428 -16.12871 -16.06724 -15.78205 -15.67982 -15.29207 -14.78722 -14.61442 -14.50417 -14.33790 -14.28663 -14.00817 -13.59509 -13.56604 -13.41056 -13.07774 -12.86165 -12.58479 -12.41967 -12.21080 -12.17029 -12.14054 -11.87160 -11.79587 -11.55927 -11.20034 -10.79261 -10.45018 -10.38726 -10.22644 -9.95151 -9.94765 -8.89599 -5.20293 -0.21929 -0.07544 0.03308 0.37511 0.49280 1.09864 1.23083 1.52504 1.55867 1.85461 1.91421 1.96823 2.68622 3.09793 3.22668 3.42339 3.49508 3.58225 3.62096 3.69084 3.71892 3.95907 4.00231 4.03879 4.13999 4.16646 4.20926 4.48167 4.50167 4.54628 4.60360 4.61405 4.62525 4.68488 4.70144 4.86598 4.89900 4.91526 4.98260 5.02713 5.15861 5.29805 5.42927 5.47664 5.50549 5.74730 5.90893 5.95365 6.13392 6.81811 6.92159 7.07781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.562 6.562 2 C -0.022 4.022 3 Si 0.752 3.248 4 C -0.271 4.271 5 C 0.110 3.890 6 N -0.558 5.558 7 C 0.329 3.671 8 N -0.673 5.673 9 C 0.135 3.865 10 H 0.096 0.904 11 C -0.142 4.142 12 C 0.127 3.873 13 H 0.103 0.897 14 N -0.683 5.683 15 C 0.648 3.352 16 O -0.598 6.598 17 O -0.369 6.369 18 C 0.131 3.869 19 C -0.116 4.116 20 C -0.105 4.105 21 C -0.131 4.131 22 C -0.113 4.113 23 C -0.132 4.132 24 C -0.106 4.106 25 C -0.141 4.141 26 S 0.051 5.949 27 H 0.405 0.595 28 H 0.107 0.893 29 H -0.274 1.274 30 H -0.287 1.287 31 H 0.190 0.810 32 H 0.419 0.581 33 H 0.134 0.866 34 H 0.077 0.923 35 H 0.410 0.590 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.134 0.866 39 H 0.144 0.856 40 H 0.144 0.856 41 H 0.143 0.857 42 H 0.132 0.868 43 H 0.068 0.932 44 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.516 2.976 4.377 5.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.373 6.373 2 C -0.135 4.135 3 Si 0.656 3.344 4 C -0.393 4.393 5 C -0.040 4.040 6 N -0.284 5.284 7 C -0.042 4.042 8 N -0.314 5.314 9 C 0.028 3.972 10 H 0.114 0.886 11 C -0.181 4.181 12 C 0.023 3.977 13 H 0.121 0.879 14 N -0.343 5.343 15 C 0.401 3.599 16 O -0.488 6.488 17 O -0.283 6.283 18 C 0.057 3.943 19 C -0.116 4.116 20 C -0.123 4.123 21 C -0.149 4.149 22 C -0.131 4.131 23 C -0.149 4.149 24 C -0.124 4.124 25 C -0.181 4.181 26 S 0.299 5.701 27 H 0.257 0.743 28 H 0.124 0.876 29 H -0.200 1.200 30 H -0.213 1.213 31 H 0.207 0.793 32 H 0.258 0.742 33 H 0.152 0.848 34 H 0.096 0.904 35 H 0.246 0.754 36 H 0.099 0.901 37 H 0.101 0.899 38 H 0.152 0.848 39 H 0.161 0.839 40 H 0.162 0.838 41 H 0.161 0.839 42 H 0.150 0.850 43 H 0.087 0.913 44 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 0.693 3.240 2.470 4.133 hybrid contribution -0.251 -0.513 0.253 0.625 sum 0.442 2.727 2.723 3.879 Atomic orbital electron populations 1.86460 1.16963 1.82319 1.51543 1.23807 0.85766 1.09438 0.94476 0.94217 0.78593 0.76020 0.85534 1.24663 1.12630 0.97892 1.04113 1.21605 0.97108 0.93456 0.91838 1.66487 1.17589 1.33573 1.10718 1.23892 0.94966 0.92842 0.92496 1.43955 1.54136 1.14574 1.18782 1.22022 1.00068 0.82064 0.93044 0.88576 1.23806 0.94231 1.04436 0.95605 1.22083 0.91044 0.87226 0.97302 0.87862 1.44486 1.20276 1.33166 1.36325 1.18281 0.81176 0.79473 0.80986 1.91006 1.73130 1.53209 1.31486 1.86314 1.35889 1.46551 1.59522 1.21814 0.81330 0.96308 0.94860 1.19571 0.98930 0.93798 0.99279 1.21323 0.99157 0.91838 0.99955 1.21491 0.96895 0.99493 0.97047 1.21626 0.97168 0.98207 0.96130 1.21489 1.00303 0.92502 1.00639 1.21323 0.95904 1.00115 0.95038 1.23767 0.94667 1.01420 0.98206 1.84212 1.52167 1.15341 1.18351 0.74301 0.87557 1.19998 1.21333 0.79319 0.74216 0.84792 0.90398 0.75354 0.90065 0.89866 0.84833 0.83866 0.83784 0.83903 0.84992 0.91340 0.85321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 0.52 12.84 -148.98 -1.91 -1.39 16 2 C -0.02 0.02 2.98 71.24 0.21 0.23 16 3 Si 0.75 -1.14 31.05 68.60 2.13 0.99 16 4 C -0.27 -1.38 5.78 24.58 0.14 -1.24 16 5 C 0.11 0.65 11.22 83.54 0.94 1.59 16 6 N -0.56 -4.02 10.14 -202.02 -2.05 -6.07 16 7 C 0.33 1.53 8.09 179.32 1.45 2.98 16 8 N -0.67 0.30 4.48 -327.90 -1.47 -1.17 16 9 C 0.14 -0.33 4.23 45.52 0.19 -0.14 16 10 H 0.10 -0.07 8.14 -2.39 -0.02 -0.09 16 11 C -0.14 0.63 7.57 31.12 0.24 0.86 16 12 C 0.13 -0.17 4.28 45.52 0.19 0.02 16 13 H 0.10 0.10 7.54 -2.39 -0.02 0.09 16 14 N -0.68 -0.76 4.97 -567.62 -2.82 -3.58 16 15 C 0.65 4.49 8.75 129.79 1.14 5.63 16 16 O -0.60 -7.70 15.77 19.78 0.31 -7.39 16 17 O -0.37 -2.22 10.25 -55.40 -0.57 -2.79 16 18 C 0.13 0.53 5.60 71.24 0.40 0.93 16 19 C -0.12 -0.39 5.52 -19.87 -0.11 -0.50 16 20 C -0.10 -0.20 9.70 22.27 0.22 0.01 16 21 C -0.13 -0.04 10.05 22.27 0.22 0.18 16 22 C -0.11 0.02 10.05 22.27 0.22 0.24 16 23 C -0.13 -0.07 10.05 22.27 0.22 0.15 16 24 C -0.11 -0.24 9.70 22.27 0.22 -0.03 16 25 C -0.14 0.43 7.61 31.12 0.24 0.67 16 26 S 0.05 0.27 20.57 -56.49 -1.16 -0.90 16 27 H 0.41 -4.77 8.74 -74.06 -0.65 -5.41 16 28 H 0.11 -0.60 7.96 -2.39 -0.02 -0.62 16 29 H -0.27 -1.00 7.11 99.48 0.71 -0.29 16 30 H -0.29 -1.82 7.11 99.48 0.71 -1.11 16 31 H 0.19 0.46 8.06 -2.91 -0.02 0.44 16 32 H 0.42 -1.22 7.98 -92.71 -0.74 -1.96 16 33 H 0.13 -1.03 8.14 -2.39 -0.02 -1.05 16 34 H 0.08 -0.26 8.13 -2.39 -0.02 -0.28 16 35 H 0.41 -0.37 7.31 -92.71 -0.68 -1.05 16 36 H 0.08 0.31 8.08 -2.39 -0.02 0.29 16 37 H 0.08 0.28 8.08 -2.38 -0.02 0.26 16 38 H 0.13 -0.11 8.06 -2.91 -0.02 -0.13 16 39 H 0.14 -0.54 8.06 -2.91 -0.02 -0.56 16 40 H 0.14 -0.64 8.06 -2.91 -0.02 -0.67 16 41 H 0.14 -0.50 8.06 -2.91 -0.02 -0.52 16 42 H 0.13 -0.02 8.06 -2.91 -0.02 -0.04 16 43 H 0.07 0.01 8.14 -2.39 -0.02 -0.01 16 44 H 0.13 -0.78 8.14 -2.39 -0.02 -0.80 16 Total: 0.00 -21.82 390.21 -2.38 -24.20 By element: Atomic # 1 Polarization: -12.54 SS G_CDS: -0.96 Total: -13.50 kcal Atomic # 6 Polarization: 5.46 SS G_CDS: 6.13 Total: 11.59 kcal Atomic # 7 Polarization: -4.48 SS G_CDS: -6.34 Total: -10.82 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: -2.17 Total: -11.56 kcal Atomic # 14 Polarization: -1.14 SS G_CDS: 2.13 Total: 0.99 kcal Atomic # 16 Polarization: 0.27 SS G_CDS: -1.16 Total: -0.90 kcal Total: -21.82 -2.38 -24.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12109460_15704118.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.696 kcal (2) G-P(sol) polarization free energy of solvation -21.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.197 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds