Wall clock time and date at job start Mon Mar 8 2021 03:49:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.33330 * 125.95261 * 2 1 4 4 C 1.50699 * 122.70693 * 359.96097 * 3 2 1 5 5 O 1.42895 * 109.47255 * 113.36053 * 4 3 2 6 6 Si 1.86301 * 109.46851 * 233.35879 * 4 3 2 7 7 N 1.32118 * 114.58216 * 179.69350 * 3 2 1 8 8 C 1.29689 * 116.86305 * 0.26306 * 7 3 2 9 9 N 1.38607 * 124.94621 * 179.97438 * 8 7 3 10 10 C 1.46509 * 119.99894 * 180.02562 * 9 8 7 11 11 H 1.08996 * 112.84756 * 333.47398 * 10 9 8 12 12 C 1.53775 * 113.61328 * 104.78039 * 10 9 8 13 13 C 1.53783 * 87.08377 * 89.11554 * 12 10 9 14 14 H 1.08995 * 113.68988 * 139.98783 * 13 12 10 15 15 N 1.46493 * 113.61121 * 270.88462 * 13 12 10 16 16 C 1.34784 * 119.99742 * 183.94728 * 15 13 12 17 17 O 1.21504 * 119.99747 * 359.97438 * 16 15 13 18 18 O 1.34638 * 120.00160 * 179.97438 * 16 15 13 19 19 C 1.45195 * 116.99915 * 179.97438 * 18 16 15 20 20 C 1.50702 * 109.46887 * 180.02562 * 19 18 16 21 21 C 1.38241 * 119.99766 * 269.72391 * 20 19 18 22 22 C 1.38239 * 119.99630 * 179.78699 * 21 20 19 23 23 C 1.38242 * 120.00023 * 0.44581 * 22 21 20 24 24 C 1.38237 * 119.99626 * 359.81247 * 23 22 21 25 25 C 1.38230 * 120.00448 * 359.97438 * 24 23 22 26 26 C 1.53779 * 113.61376 * 202.27642 * 10 9 8 27 27 S 1.70965 * 110.10438 * 0.02562 * 8 7 3 28 28 H 1.09003 * 109.47133 * 84.74528 * 1 2 3 29 29 H 1.09005 * 109.47392 * 204.73638 * 1 2 3 30 30 H 1.08998 * 109.47513 * 324.74620 * 1 2 3 31 31 H 1.09001 * 109.47344 * 353.35515 * 4 3 2 32 32 H 0.96696 * 114.00266 * 59.99432 * 5 4 3 33 33 H 1.48503 * 110.00114 * 179.97438 * 6 4 3 34 34 H 1.48497 * 110.00128 * 301.31821 * 6 4 3 35 35 H 0.96996 * 120.00115 * 0.02562 * 9 8 7 36 36 H 1.09004 * 113.61278 * 203.66798 * 12 10 9 37 37 H 1.09004 * 113.61491 * 334.56698 * 12 10 9 38 38 H 0.97002 * 120.00547 * 3.94861 * 15 13 12 39 39 H 1.08995 * 109.47122 * 300.00124 * 19 18 16 40 40 H 1.09001 * 109.47119 * 60.00498 * 19 18 16 41 41 H 1.07992 * 120.00051 * 0.02562 * 21 20 19 42 42 H 1.07999 * 119.99920 * 180.27909 * 22 21 20 43 43 H 1.07997 * 119.99678 * 179.82846 * 23 22 21 44 44 H 1.08003 * 119.99476 * 180.02562 * 24 23 22 45 45 H 1.07995 * 120.00124 * 180.02562 * 25 24 23 46 46 H 1.09005 * 113.61462 * 25.43557 * 26 10 9 47 47 H 1.09001 * 113.61286 * 156.33743 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2897 1.0793 0.0000 4 6 1.7413 2.4830 -0.0009 5 8 2.0649 3.1215 1.2358 6 14 2.4926 3.4422 -1.4102 7 7 3.5850 0.8188 0.0064 8 6 3.9314 -0.4309 0.0065 9 7 5.2384 -0.8925 0.0122 10 6 5.5065 -2.3329 0.0112 11 1 4.6982 -2.9142 0.4548 12 6 5.9794 -2.8704 -1.3498 13 6 7.4116 -2.5501 -0.8902 14 1 8.1424 -3.3070 -1.1748 15 7 7.8433 -1.1897 -1.2204 16 6 9.1040 -0.7981 -0.9482 17 8 9.8821 -1.5733 -0.4286 18 8 9.5010 0.4520 -1.2521 19 6 10.8722 0.8047 -0.9301 20 6 11.1329 2.2316 -1.3386 21 6 11.6082 2.5119 -2.6061 22 6 11.8432 3.8212 -2.9823 23 6 11.6117 4.8495 -2.0878 24 6 11.1415 4.5687 -0.8185 25 6 10.9023 3.2598 -0.4439 26 6 6.8984 -2.7007 0.5516 27 16 2.5413 -1.4261 -0.0028 28 1 -0.3633 0.0941 -1.0234 29 1 -0.3634 -0.9334 0.4300 30 1 -0.3634 0.8392 0.5931 31 1 0.6584 2.4499 -0.1204 32 1 3.0141 3.1861 1.4087 33 1 1.9594 4.8282 -1.4225 34 1 3.9713 3.4676 -1.2762 35 1 5.9754 -0.2620 0.0169 36 1 5.7928 -3.9355 -1.4873 37 1 5.6475 -2.2688 -2.1960 38 1 7.2220 -0.5708 -1.6348 39 1 11.0320 0.6993 0.1429 40 1 11.5529 0.1429 -1.4656 41 1 11.7922 1.7083 -3.3037 42 1 12.2102 4.0405 -3.9740 43 1 11.7980 5.8721 -2.3808 44 1 10.9603 5.3722 -0.1199 45 1 10.5346 3.0406 0.5476 46 1 7.3086 -1.9621 1.2404 47 1 6.9631 -3.7194 0.9339 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_12109460_15704122.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 03:49:32 Heat of formation + Delta-G solvation = 3.579304 kcal Electronic energy + Delta-G solvation = -31269.280903 eV Core-core repulsion = 26932.882115 eV Total energy + Delta-G solvation = -4336.398788 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 376.129 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -42.00972 -41.13211 -40.60861 -39.99043 -37.81753 -37.50918 -35.75981 -34.39048 -33.12235 -32.57813 -31.93888 -29.02874 -27.78469 -26.89337 -26.06991 -25.39551 -24.44289 -23.63308 -22.89395 -22.26534 -21.35926 -20.34352 -19.98417 -18.88889 -18.34337 -18.07295 -17.88492 -17.59956 -17.39466 -16.75307 -16.44265 -16.39628 -16.17195 -15.97301 -15.81003 -15.68175 -15.34323 -14.80192 -14.48806 -14.27421 -14.25231 -14.21529 -14.01226 -13.92763 -13.59397 -13.49262 -13.45545 -13.36616 -13.11458 -12.85299 -12.42389 -12.29394 -12.21081 -12.15972 -11.89066 -11.85581 -11.78993 -11.53067 -11.11254 -10.71587 -10.51329 -10.33512 -10.03264 -9.96237 -9.95559 -8.66668 -4.98900 -0.03618 0.02927 0.15933 0.36386 0.74029 1.12535 1.24052 1.55753 1.65968 1.76495 1.85718 2.06493 2.68506 3.11091 3.23193 3.28332 3.42509 3.57294 3.62750 3.67222 3.70911 3.97365 3.99548 4.05272 4.13079 4.16014 4.20518 4.23864 4.49026 4.49691 4.51085 4.55317 4.60414 4.69401 4.72124 4.82693 4.88107 4.90620 4.91429 4.94230 5.01116 5.01482 5.14883 5.27790 5.31962 5.41927 5.46653 5.49332 5.68888 5.94314 6.14828 6.20061 6.31908 6.89535 7.11376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.247 4.247 3 C 0.055 3.945 4 C -0.043 4.043 5 O -0.542 6.542 6 Si 0.774 3.226 7 N -0.575 5.575 8 C 0.304 3.696 9 N -0.679 5.679 10 C 0.120 3.880 11 H 0.112 0.888 12 C -0.138 4.138 13 C 0.128 3.872 14 H 0.100 0.900 15 N -0.685 5.685 16 C 0.646 3.354 17 O -0.597 6.597 18 O -0.370 6.370 19 C 0.132 3.868 20 C -0.115 4.115 21 C -0.104 4.104 22 C -0.130 4.130 23 C -0.114 4.114 24 C -0.133 4.133 25 C -0.107 4.107 26 C -0.149 4.149 27 S 0.145 5.855 28 H 0.095 0.905 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.141 0.859 32 H 0.383 0.617 33 H -0.290 1.290 34 H -0.298 1.298 35 H 0.406 0.594 36 H 0.144 0.856 37 H 0.086 0.914 38 H 0.413 0.587 39 H 0.080 0.920 40 H 0.083 0.917 41 H 0.135 0.865 42 H 0.145 0.855 43 H 0.144 0.856 44 H 0.141 0.859 45 H 0.130 0.870 46 H 0.061 0.939 47 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.911 -3.802 -3.907 6.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.371 4.371 3 C -0.075 4.075 4 C -0.154 4.154 5 O -0.349 6.349 6 Si 0.679 3.321 7 N -0.302 5.302 8 C -0.067 4.067 9 N -0.319 5.319 10 C 0.015 3.985 11 H 0.129 0.871 12 C -0.177 4.177 13 C 0.024 3.976 14 H 0.118 0.882 15 N -0.345 5.345 16 C 0.399 3.601 17 O -0.487 6.487 18 O -0.284 6.284 19 C 0.058 3.942 20 C -0.115 4.115 21 C -0.122 4.122 22 C -0.148 4.148 23 C -0.132 4.132 24 C -0.151 4.151 25 C -0.125 4.125 26 C -0.188 4.188 27 S 0.394 5.606 28 H 0.113 0.887 29 H 0.094 0.906 30 H 0.098 0.902 31 H 0.159 0.841 32 H 0.231 0.769 33 H -0.217 1.217 34 H -0.225 1.225 35 H 0.244 0.756 36 H 0.162 0.838 37 H 0.104 0.896 38 H 0.250 0.750 39 H 0.098 0.902 40 H 0.102 0.898 41 H 0.153 0.847 42 H 0.163 0.837 43 H 0.162 0.838 44 H 0.159 0.841 45 H 0.148 0.852 46 H 0.080 0.920 47 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -2.354 -4.294 -3.836 6.220 hybrid contribution 0.992 1.677 1.203 2.290 sum -1.362 -2.617 -2.632 3.954 Atomic orbital electron populations 1.20323 0.85214 1.03673 1.04194 1.25520 1.02404 0.93352 1.15786 1.20019 0.86796 0.97499 1.03196 1.24817 1.05754 0.89902 0.94956 1.86533 1.30160 1.80197 1.38044 0.93955 0.77240 0.77517 0.83381 1.66030 1.18195 1.18001 1.28002 1.23490 0.92608 0.91780 0.98827 1.43868 1.01223 1.06946 1.79869 1.22242 0.99007 0.78966 0.98332 0.87055 1.23897 0.91505 1.05056 0.97283 1.22073 0.97600 0.81333 0.96598 0.88202 1.44547 1.09368 1.15616 1.64967 1.18309 0.83638 0.80685 0.77421 1.91003 1.54281 1.54660 1.48790 1.86323 1.33776 1.30012 1.78318 1.21784 0.78168 0.92737 1.01524 1.19582 1.02906 0.93337 0.95718 1.21336 0.97833 0.97919 0.95104 1.21502 1.00043 0.92365 1.00901 1.21623 0.97357 1.00594 0.93605 1.21476 0.99497 0.96730 0.97398 1.21303 0.98422 0.92862 0.99904 1.23828 0.93659 1.04662 0.96666 1.83710 0.94877 1.08894 1.73161 0.88653 0.90616 0.90169 0.84143 0.76853 1.21713 1.22534 0.75563 0.83785 0.89578 0.75001 0.90182 0.89834 0.84689 0.83722 0.83804 0.84116 0.85189 0.92004 0.84733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 0.30 9.70 71.23 0.69 0.99 16 2 C -0.25 -0.30 6.57 24.57 0.16 -0.14 16 3 C 0.05 0.24 5.19 41.41 0.21 0.45 16 4 C -0.04 -0.13 2.84 71.24 0.20 0.07 16 5 O -0.54 -3.89 12.88 -148.98 -1.92 -5.81 16 6 Si 0.77 2.33 32.62 68.60 2.24 4.57 16 7 N -0.58 -3.69 9.77 -189.86 -1.86 -5.54 16 8 C 0.30 0.74 8.24 179.32 1.48 2.22 16 9 N -0.68 0.95 5.11 -327.90 -1.68 -0.73 16 10 C 0.12 -0.77 4.27 45.51 0.19 -0.58 16 11 H 0.11 -0.91 7.15 -2.39 -0.02 -0.92 16 12 C -0.14 1.29 7.57 31.12 0.24 1.53 16 13 C 0.13 -0.54 4.02 45.52 0.18 -0.36 16 14 H 0.10 -0.27 8.02 -2.39 -0.02 -0.29 16 15 N -0.68 0.32 4.38 -567.62 -2.48 -2.17 16 16 C 0.65 4.11 8.75 129.79 1.14 5.25 16 17 O -0.60 -7.29 16.05 19.83 0.32 -6.98 16 18 O -0.37 -2.34 10.25 -55.48 -0.57 -2.91 16 19 C 0.13 0.60 5.60 71.24 0.40 1.00 16 20 C -0.12 -0.49 5.52 -19.86 -0.11 -0.59 16 21 C -0.10 -0.27 9.70 22.27 0.22 -0.06 16 22 C -0.13 -0.14 10.05 22.27 0.22 0.09 16 23 C -0.11 -0.10 10.05 22.27 0.22 0.12 16 24 C -0.13 -0.25 10.05 22.27 0.22 -0.03 16 25 C -0.11 -0.38 9.70 22.27 0.22 -0.16 16 26 C -0.15 0.78 7.62 31.12 0.24 1.01 16 27 S 0.14 -0.15 21.73 -56.49 -1.23 -1.38 16 28 H 0.09 -0.71 8.14 -2.39 -0.02 -0.73 16 29 H 0.07 -0.39 8.14 -2.38 -0.02 -0.41 16 30 H 0.08 -0.31 7.18 -2.39 -0.02 -0.33 16 31 H 0.14 -0.18 6.34 -2.39 -0.02 -0.19 16 32 H 0.38 1.81 8.70 -74.06 -0.64 1.16 16 33 H -0.29 -2.37 7.11 99.48 0.71 -1.66 16 34 H -0.30 -3.21 7.11 99.48 0.71 -2.50 16 35 H 0.41 0.08 7.27 -92.71 -0.67 -0.59 16 36 H 0.14 -2.02 8.14 -2.38 -0.02 -2.04 16 37 H 0.09 -0.72 8.14 -2.38 -0.02 -0.74 16 38 H 0.41 -1.04 7.86 -92.71 -0.73 -1.76 16 39 H 0.08 0.35 8.08 -2.39 -0.02 0.33 16 40 H 0.08 0.32 8.08 -2.39 -0.02 0.30 16 41 H 0.14 -0.04 8.06 -2.91 -0.02 -0.07 16 42 H 0.14 -0.47 8.06 -2.91 -0.02 -0.50 16 43 H 0.14 -0.50 8.06 -2.91 -0.02 -0.52 16 44 H 0.14 -0.26 8.06 -2.91 -0.02 -0.29 16 45 H 0.13 0.17 8.06 -2.91 -0.02 0.14 16 46 H 0.06 -0.02 8.14 -2.38 -0.02 -0.04 16 47 H 0.13 -1.22 8.14 -2.39 -0.02 -1.24 16 Total: 0.00 -20.99 410.23 -2.02 -23.01 By element: Atomic # 1 Polarization: -11.91 SS G_CDS: -0.97 Total: -12.88 kcal Atomic # 6 Polarization: 4.70 SS G_CDS: 6.12 Total: 10.82 kcal Atomic # 7 Polarization: -2.43 SS G_CDS: -6.01 Total: -8.44 kcal Atomic # 8 Polarization: -13.53 SS G_CDS: -2.17 Total: -15.70 kcal Atomic # 14 Polarization: 2.33 SS G_CDS: 2.24 Total: 4.57 kcal Atomic # 16 Polarization: -0.15 SS G_CDS: -1.23 Total: -1.38 kcal Total: -20.99 -2.02 -23.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12109460_15704122.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.591 kcal (2) G-P(sol) polarization free energy of solvation -20.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.012 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds