Wall clock time and date at job start Mon Mar 8 2021 03:49:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86303 * 109.47399 * 2 1 4 4 C 1.50705 * 109.46771 * 119.99931 * 2 1 3 5 5 C 1.37985 * 120.32508 * 245.02079 * 4 2 1 6 6 N 1.32013 * 120.89709 * 179.97438 * 5 4 2 7 7 C 1.32340 * 121.64744 * 359.72272 * 6 5 4 8 8 N 1.39140 * 119.71914 * 180.26587 * 7 6 5 9 9 C 1.46502 * 120.00047 * 0.27225 * 8 7 6 10 10 H 1.08998 * 112.85089 * 333.13231 * 9 8 7 11 11 C 1.53783 * 113.61311 * 104.43159 * 9 8 7 12 12 C 1.53789 * 87.07538 * 89.11856 * 11 9 8 13 13 H 1.09003 * 113.60979 * 139.98436 * 12 11 9 14 14 N 1.46495 * 113.69214 * 270.86909 * 12 11 9 15 15 C 1.34777 * 120.00265 * 182.68898 * 14 12 11 16 16 O 1.21507 * 119.99819 * 0.02562 * 15 14 12 17 17 O 1.34631 * 120.00211 * 180.02562 * 15 14 12 18 18 C 1.45199 * 117.00112 * 179.97438 * 17 15 14 19 19 C 1.50699 * 109.47324 * 180.02562 * 18 17 15 20 20 C 1.38242 * 120.00022 * 269.72827 * 19 18 17 21 21 C 1.38230 * 119.99831 * 179.76575 * 20 19 18 22 22 C 1.38230 * 120.00303 * 0.48527 * 21 20 19 23 23 C 1.38238 * 119.99875 * 359.78591 * 22 21 20 24 24 C 1.38230 * 120.00257 * 90.00014 * 19 18 17 25 25 C 1.53777 * 87.08343 * 25.43453 * 12 11 9 26 26 C 1.39347 * 120.56326 * 0.54197 * 7 6 5 27 27 F 1.35100 * 120.47309 * 179.74486 * 26 7 6 28 28 C 1.38443 * 119.05360 * 359.47748 * 26 7 6 29 29 H 0.96706 * 113.99548 * 59.99838 * 1 2 3 30 30 H 1.09000 * 109.47333 * 239.99573 * 2 1 3 31 31 H 1.48505 * 109.99590 * 59.99830 * 3 2 1 32 32 H 1.48495 * 109.99960 * 181.31470 * 3 2 1 33 33 H 1.07998 * 119.55256 * 0.02562 * 5 4 2 34 34 H 0.96993 * 120.00048 * 180.27192 * 8 7 6 35 35 H 1.08999 * 113.61560 * 203.66349 * 11 9 8 36 36 H 1.08993 * 113.61812 * 334.57541 * 11 9 8 37 37 H 0.97004 * 119.99700 * 2.69252 * 14 12 11 38 38 H 1.09006 * 109.47202 * 299.99867 * 18 17 15 39 39 H 1.09003 * 109.47125 * 60.00229 * 18 17 15 40 40 H 1.07997 * 119.99482 * 359.97438 * 20 19 18 41 41 H 1.08000 * 119.99714 * 180.25348 * 21 20 19 42 42 H 1.08005 * 119.99999 * 179.77110 * 22 21 20 43 43 H 1.08002 * 119.99655 * 179.97438 * 23 22 21 44 44 H 1.08003 * 119.99976 * 359.97438 * 24 19 18 45 45 H 1.08997 * 113.61609 * 220.02172 * 25 12 11 46 46 H 1.09000 * 113.61703 * 89.11377 * 25 12 11 47 47 H 1.08001 * 120.75472 * 180.27492 * 28 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7565 0.0000 4 6 1.9312 -0.7104 1.2305 5 6 2.6376 -0.0200 2.1940 6 7 3.0824 -0.6309 3.2765 7 6 2.8667 -1.9200 3.4845 8 7 3.3491 -2.5220 4.6424 9 6 4.0871 -1.7281 5.6280 10 1 4.5912 -0.8682 5.1870 11 6 3.2666 -1.3866 6.8830 12 6 3.7807 -2.7063 7.4822 13 1 4.0371 -2.6353 8.5392 14 7 2.9313 -3.8607 7.1792 15 6 3.2338 -5.0719 7.6872 16 8 4.2109 -5.2062 8.3969 17 8 2.4534 -6.1329 7.4084 18 6 2.8400 -7.4063 7.9892 19 6 1.8570 -8.4688 7.5698 20 6 0.7410 -8.7228 8.3452 21 6 -0.1631 -9.6941 7.9579 22 6 0.0538 -10.4183 6.8007 23 6 1.1726 -10.1682 6.0283 24 6 2.0741 -9.1934 6.4128 25 6 4.9915 -2.5693 6.5441 26 6 2.1655 -2.6807 2.5510 27 9 1.9508 -3.9976 2.7628 28 6 1.6872 -2.0665 1.4062 29 1 -0.3933 0.4418 -0.7651 30 1 1.7923 -0.5139 -0.8899 31 1 1.5615 2.4679 1.2085 32 1 3.5346 1.7702 -0.0320 33 1 2.8286 1.0346 2.0612 34 1 3.1967 -3.4674 4.7971 35 1 3.6218 -0.5005 7.4091 36 1 2.1903 -1.3751 6.7113 37 1 2.1510 -3.7534 6.6130 38 1 3.8370 -7.6767 7.6413 39 1 2.8443 -7.3236 9.0761 40 1 0.5739 -8.1600 9.2517 41 1 -1.0371 -9.8896 8.5616 42 1 -0.6508 -11.1797 6.5001 43 1 1.3423 -10.7344 5.1244 44 1 2.9480 -8.9977 5.8091 45 1 5.3077 -3.5125 6.0987 46 1 5.8183 -2.0066 6.9776 47 1 1.1364 -2.6289 0.6667 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_12109460_17656566.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 03:49:36 Heat of formation + Delta-G solvation = -40.162392 kcal Electronic energy + Delta-G solvation = -33286.174929 eV Core-core repulsion = 28544.810756 eV Total energy + Delta-G solvation = -4741.364173 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 374.147 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -50.09487 -42.09110 -41.51675 -40.58226 -39.96109 -37.90688 -37.52363 -35.83137 -34.43155 -33.38283 -33.05505 -31.92192 -31.33265 -27.82000 -26.99061 -26.72364 -25.91300 -24.64632 -23.61555 -23.14402 -22.63791 -22.24123 -20.95915 -19.99258 -19.48340 -18.54600 -18.30806 -18.29228 -18.12221 -17.79990 -17.50057 -17.07575 -16.78104 -16.71360 -16.24490 -16.16222 -15.91291 -15.78790 -15.47407 -15.10808 -14.91871 -14.80106 -14.49053 -14.42563 -14.25874 -14.08314 -14.00674 -13.99067 -13.65927 -13.49155 -13.36707 -13.00829 -12.60788 -12.34566 -12.20536 -12.15813 -12.09665 -11.87735 -11.79098 -11.53310 -11.38959 -10.91061 -10.86192 -10.37871 -10.24426 -9.94470 -9.94054 -8.94165 -4.90845 -0.27971 -0.03606 0.03771 0.38203 1.09542 1.32254 1.52700 1.70034 1.77819 1.99259 2.34328 2.68813 2.86399 3.03604 3.10247 3.26484 3.32204 3.43926 3.59842 3.62644 3.70294 3.71914 3.73333 3.99639 4.00872 4.04215 4.14270 4.17041 4.21405 4.28034 4.35570 4.50709 4.52144 4.59344 4.61941 4.66579 4.67169 4.70665 4.85777 4.87318 4.87495 4.92082 5.03277 5.10448 5.20496 5.34096 5.43531 5.48316 5.51110 5.83273 5.96023 5.98214 6.12878 6.74731 6.94793 7.08261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.565 6.565 2 C -0.066 4.066 3 Si 0.772 3.228 4 C -0.168 4.168 5 C 0.129 3.871 6 N -0.521 5.521 7 C 0.382 3.618 8 N -0.699 5.699 9 C 0.129 3.871 10 H 0.107 0.893 11 C -0.138 4.138 12 C 0.131 3.869 13 H 0.099 0.901 14 N -0.686 5.686 15 C 0.647 3.353 16 O -0.596 6.596 17 O -0.368 6.368 18 C 0.131 3.869 19 C -0.116 4.116 20 C -0.105 4.105 21 C -0.131 4.131 22 C -0.113 4.113 23 C -0.131 4.131 24 C -0.105 4.105 25 C -0.151 4.151 26 C -0.031 4.031 27 F -0.136 7.136 28 C -0.036 4.036 29 H 0.405 0.595 30 H 0.099 0.901 31 H -0.290 1.290 32 H -0.285 1.285 33 H 0.160 0.840 34 H 0.411 0.589 35 H 0.134 0.866 36 H 0.076 0.924 37 H 0.412 0.588 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.133 0.867 41 H 0.144 0.856 42 H 0.145 0.855 43 H 0.143 0.857 44 H 0.132 0.868 45 H 0.062 0.938 46 H 0.129 0.871 47 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.685 2.589 -5.366 6.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.375 6.375 2 C -0.176 4.176 3 Si 0.677 3.323 4 C -0.173 4.173 5 C -0.028 4.028 6 N -0.238 5.238 7 C 0.143 3.857 8 N -0.333 5.333 9 C 0.023 3.977 10 H 0.125 0.875 11 C -0.177 4.177 12 C 0.027 3.973 13 H 0.117 0.883 14 N -0.346 5.346 15 C 0.400 3.600 16 O -0.487 6.487 17 O -0.282 6.282 18 C 0.057 3.943 19 C -0.116 4.116 20 C -0.123 4.123 21 C -0.149 4.149 22 C -0.131 4.131 23 C -0.149 4.149 24 C -0.123 4.123 25 C -0.190 4.190 26 C -0.058 4.058 27 F -0.115 7.115 28 C -0.063 4.063 29 H 0.257 0.743 30 H 0.117 0.883 31 H -0.218 1.218 32 H -0.212 1.212 33 H 0.176 0.824 34 H 0.249 0.751 35 H 0.152 0.848 36 H 0.095 0.905 37 H 0.249 0.751 38 H 0.099 0.901 39 H 0.100 0.900 40 H 0.151 0.849 41 H 0.162 0.838 42 H 0.163 0.837 43 H 0.161 0.839 44 H 0.150 0.850 45 H 0.081 0.919 46 H 0.147 0.853 47 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -1.089 3.245 -3.275 4.737 hybrid contribution -0.662 -1.805 -0.306 1.947 sum -1.751 1.440 -3.580 4.238 Atomic orbital electron populations 1.86444 1.17097 1.82467 1.51536 1.24626 0.85984 1.10933 0.96101 0.94087 0.77633 0.75339 0.85223 1.20282 1.03963 0.93987 0.99113 1.22411 0.93049 0.99350 0.87995 1.67258 1.25374 1.07673 1.23459 1.18508 0.90898 0.88964 0.87303 1.44396 1.59267 1.11753 1.17860 1.21992 0.92859 0.94944 0.87872 0.87475 1.23796 1.01366 0.96578 0.96009 1.22044 0.91180 0.83920 1.00161 0.88330 1.44524 1.31686 1.04832 1.53550 1.18268 0.80869 0.81940 0.78876 1.91004 1.30184 1.85305 1.42162 1.86322 1.53351 1.17779 1.70782 1.21809 0.97198 0.76911 0.98392 1.19568 0.97169 0.97440 0.97400 1.21322 0.93226 0.97843 0.99915 1.21486 0.99882 0.95993 0.97509 1.21624 0.97585 0.99343 0.94538 1.21484 0.94586 0.98044 1.00797 1.21311 1.00028 0.95722 0.95289 1.23826 0.97862 1.00801 0.96497 1.18152 1.09209 0.79497 0.98919 1.91487 1.93714 1.31367 1.94974 1.21506 0.94923 0.94604 0.95221 0.74311 0.88304 1.21767 1.21150 0.82367 0.75060 0.84795 0.90526 0.75126 0.90057 0.89966 0.84911 0.83838 0.83747 0.83913 0.85042 0.91892 0.85309 0.81653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.57 1.63 12.82 -148.98 -1.91 -0.28 16 2 C -0.07 0.22 2.81 71.24 0.20 0.42 16 3 Si 0.77 -3.69 29.88 68.60 2.05 -1.64 16 4 C -0.17 -0.51 5.39 -19.76 -0.11 -0.62 16 5 C 0.13 0.67 9.84 84.61 0.83 1.50 16 6 N -0.52 -3.58 9.17 -193.03 -1.77 -5.35 16 7 C 0.38 2.26 7.49 133.09 1.00 3.26 16 8 N -0.70 -1.68 5.12 -321.78 -1.65 -3.32 16 9 C 0.13 -0.06 4.31 45.52 0.20 0.14 16 10 H 0.11 0.08 7.48 -2.39 -0.02 0.07 16 11 C -0.14 0.46 7.58 31.12 0.24 0.70 16 12 C 0.13 -0.04 3.99 45.52 0.18 0.14 16 13 H 0.10 0.08 8.05 -2.39 -0.02 0.06 16 14 N -0.69 -1.44 4.35 -567.62 -2.47 -3.91 16 15 C 0.65 5.12 8.75 129.79 1.14 6.26 16 16 O -0.60 -8.20 16.07 19.82 0.32 -7.88 16 17 O -0.37 -2.61 10.25 -55.40 -0.57 -3.17 16 18 C 0.13 0.66 5.60 71.24 0.40 1.06 16 19 C -0.12 -0.50 5.52 -19.87 -0.11 -0.61 16 20 C -0.10 -0.31 9.70 22.27 0.22 -0.09 16 21 C -0.13 -0.14 10.05 22.27 0.22 0.08 16 22 C -0.11 -0.06 10.05 22.27 0.22 0.16 16 23 C -0.13 -0.17 10.05 22.27 0.22 0.06 16 24 C -0.11 -0.33 9.70 22.27 0.22 -0.11 16 25 C -0.15 0.14 7.62 31.12 0.24 0.38 16 26 C -0.03 -0.18 7.35 22.59 0.17 -0.02 16 27 F -0.14 -0.91 16.65 44.97 0.75 -0.16 16 28 C -0.04 -0.13 9.82 22.48 0.22 0.09 16 29 H 0.41 -5.41 8.74 -74.05 -0.65 -6.06 16 30 H 0.10 -0.76 7.96 -2.39 -0.02 -0.78 16 31 H -0.29 -0.68 7.05 99.48 0.70 0.02 16 32 H -0.28 -0.19 7.11 99.48 0.71 0.52 16 33 H 0.16 0.51 4.87 -2.91 -0.01 0.49 16 34 H 0.41 0.86 6.66 -92.71 -0.62 0.24 16 35 H 0.13 -0.94 8.14 -2.39 -0.02 -0.96 16 36 H 0.08 -0.14 8.13 -2.39 -0.02 -0.16 16 37 H 0.41 -0.05 7.94 -92.70 -0.74 -0.79 16 38 H 0.08 0.38 8.08 -2.38 -0.02 0.36 16 39 H 0.08 0.37 8.08 -2.39 -0.02 0.35 16 40 H 0.13 0.04 8.06 -2.91 -0.02 0.02 16 41 H 0.14 -0.44 8.06 -2.91 -0.02 -0.46 16 42 H 0.14 -0.56 8.06 -2.91 -0.02 -0.59 16 43 H 0.14 -0.40 8.06 -2.91 -0.02 -0.42 16 44 H 0.13 0.09 8.06 -2.91 -0.02 0.07 16 45 H 0.06 0.18 8.14 -2.39 -0.02 0.16 16 46 H 0.13 -0.56 8.14 -2.39 -0.02 -0.58 16 47 H 0.17 -0.01 8.06 -2.91 -0.02 -0.03 16 Total: 0.00 -20.91 402.83 -0.48 -21.38 By element: Atomic # 1 Polarization: -7.54 SS G_CDS: -0.92 Total: -8.46 kcal Atomic # 6 Polarization: 7.11 SS G_CDS: 5.69 Total: 12.79 kcal Atomic # 7 Polarization: -6.70 SS G_CDS: -5.88 Total: -12.58 kcal Atomic # 8 Polarization: -9.18 SS G_CDS: -2.16 Total: -11.34 kcal Atomic # 9 Polarization: -0.91 SS G_CDS: 0.75 Total: -0.16 kcal Atomic # 14 Polarization: -3.69 SS G_CDS: 2.05 Total: -1.64 kcal Total: -20.91 -0.48 -21.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12109460_17656566.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.778 kcal (2) G-P(sol) polarization free energy of solvation -20.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds