Wall clock time and date at job start Mon Mar 8 2021 03:49:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34223 * 116.99931 * 2 1 4 4 O 1.20820 * 120.00103 * 359.97438 * 3 2 1 5 5 C 1.50709 * 119.99791 * 180.02562 * 3 2 1 6 6 H 1.08999 * 112.84842 * 48.79955 * 5 3 2 7 7 C 1.53779 * 113.61012 * 180.02562 * 5 3 2 8 8 C 1.53788 * 87.08021 * 139.98214 * 7 5 3 9 9 H 1.08993 * 113.61375 * 89.19512 * 8 7 5 10 10 N 1.46492 * 113.61070 * 220.01917 * 8 7 5 11 11 C 1.46494 * 120.00507 * 54.27399 * 10 8 7 12 12 C 1.38409 * 119.99773 * 234.27257 * 10 8 7 13 13 N 1.32493 * 119.22015 * 179.97438 * 12 10 8 14 14 C 1.32273 * 120.74402 * 179.97438 * 13 12 10 15 15 C 1.38604 * 119.19606 * 0.02562 * 14 13 12 16 16 C 1.50701 * 120.71925 * 179.97438 * 15 14 13 17 17 O 1.42896 * 109.47162 * 65.00095 * 16 15 14 18 18 Si 1.86303 * 109.46893 * 184.99912 * 16 15 14 19 19 C 1.38608 * 118.56012 * 0.25076 * 15 14 13 20 20 N 1.32282 * 119.19159 * 359.50945 * 19 15 14 21 21 C 1.53784 * 87.16923 * 334.60449 * 8 7 5 22 22 H 1.09002 * 109.47562 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46769 * 299.99890 * 1 2 3 24 24 H 1.08995 * 109.47609 * 59.99563 * 1 2 3 25 25 H 1.08991 * 113.61990 * 25.43105 * 7 5 3 26 26 H 1.09008 * 113.68976 * 254.53696 * 7 5 3 27 27 H 1.09001 * 109.47212 * 275.10545 * 11 10 8 28 28 H 1.09007 * 109.47157 * 35.10483 * 11 10 8 29 29 H 1.09004 * 109.47894 * 155.10413 * 11 10 8 30 30 H 1.07997 * 120.40347 * 179.97438 * 14 13 12 31 31 H 1.09002 * 109.47152 * 304.99919 * 16 15 14 32 32 H 0.96705 * 113.99702 * 180.02562 * 17 16 15 33 33 H 1.48503 * 109.99735 * 178.67987 * 18 16 15 34 34 H 1.48494 * 110.00006 * 300.00093 * 18 16 15 35 35 H 1.07992 * 120.40343 * 179.72772 * 19 15 14 36 36 H 1.09004 * 113.60919 * 139.93780 * 21 8 7 37 37 H 1.08994 * 113.61522 * 270.84698 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2092 -0.0005 5 6 3.5664 1.2748 -0.0006 6 1 4.0233 0.6363 -0.7567 7 6 4.1077 2.7141 0.0001 8 6 5.1815 2.2261 0.9870 9 1 6.0816 1.8491 0.5015 10 7 5.4709 3.1816 2.0590 11 6 4.3837 3.6954 2.8956 12 6 6.7717 3.5990 2.2814 13 7 7.0159 4.4641 3.2548 14 6 8.2476 4.8828 3.4941 15 6 9.2877 4.4059 2.7119 16 6 10.7040 4.8604 2.9541 17 8 11.1358 4.4094 4.2394 18 14 11.8175 4.1497 1.6403 19 6 8.9963 3.5065 1.6984 20 7 7.7430 3.1247 1.5153 21 6 4.1937 1.1210 1.3969 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 3.4175 3.4401 0.4297 26 1 4.5106 3.0310 -0.9619 27 1 3.9170 4.5478 2.4019 28 1 3.6409 2.9122 3.0476 29 1 4.7840 4.0086 3.8599 30 1 8.4403 5.5884 4.2887 31 1 10.7476 5.9490 2.9174 32 1 12.0408 4.6668 4.4630 33 1 13.2117 4.6162 1.8494 34 1 11.7669 2.6662 1.6798 35 1 9.7832 3.1193 1.0683 36 1 4.6658 0.1522 1.5604 37 1 3.5270 1.4107 2.2090 There are 51 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 51 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_12109656_12175864.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 03:49:40 Heat of formation + Delta-G solvation = -6.524937 kcal Electronic energy + Delta-G solvation = -21708.725322 eV Core-core repulsion = 18262.253554 eV Total energy + Delta-G solvation = -3446.471768 eV No. of doubly occupied orbitals = 51 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 280.126 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.27112 -41.80723 -40.00267 -38.05751 -37.51686 -36.15509 -34.74552 -32.78117 -29.53527 -28.51828 -27.40653 -26.84493 -25.66682 -25.30814 -23.18704 -21.86469 -20.29936 -19.51754 -18.94054 -18.52434 -18.37579 -17.63925 -17.42576 -16.63195 -16.48326 -16.24793 -15.83964 -15.67092 -15.26703 -14.77676 -14.59911 -14.38546 -14.29801 -13.93925 -13.73830 -13.36759 -13.26360 -13.01251 -12.89264 -12.40480 -12.33784 -12.15332 -11.90525 -11.85750 -11.83391 -11.68099 -11.39366 -11.07581 -10.62643 -10.00639 -8.92187 -4.89800 0.03128 0.13727 1.05237 1.32508 1.47064 1.62484 1.82318 1.97896 2.71934 3.11536 3.23662 3.32748 3.42050 3.52249 3.66378 3.68613 3.76885 3.91775 4.00960 4.16956 4.24427 4.26237 4.28118 4.46639 4.51399 4.55617 4.59424 4.64283 4.68252 4.75869 4.84729 4.87306 4.92966 5.12839 5.32059 5.34476 5.75068 5.82111 6.31954 6.64616 6.64749 7.18152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.362 6.362 3 C 0.471 3.529 4 O -0.538 6.538 5 C -0.100 4.100 6 H 0.157 0.843 7 C -0.131 4.131 8 C 0.139 3.861 9 H 0.137 0.863 10 N -0.575 5.575 11 C 0.097 3.903 12 C 0.550 3.450 13 N -0.587 5.587 14 C 0.212 3.788 15 C -0.248 4.248 16 C -0.060 4.060 17 O -0.560 6.560 18 Si 0.756 3.244 19 C 0.193 3.807 20 N -0.574 5.574 21 C -0.129 4.129 22 H 0.128 0.872 23 H 0.060 0.940 24 H 0.061 0.939 25 H 0.085 0.915 26 H 0.093 0.907 27 H 0.054 0.946 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.184 0.816 31 H 0.102 0.898 32 H 0.397 0.603 33 H -0.283 1.283 34 H -0.294 1.294 35 H 0.186 0.814 36 H 0.104 0.896 37 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.229 -0.418 -1.998 3.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.278 6.278 3 C 0.315 3.685 4 O -0.428 6.428 5 C -0.119 4.119 6 H 0.174 0.826 7 C -0.169 4.169 8 C 0.035 3.965 9 H 0.154 0.846 10 N -0.289 5.289 11 C -0.046 4.046 12 C 0.195 3.805 13 N -0.309 5.309 14 C 0.045 3.955 15 C -0.256 4.256 16 C -0.170 4.170 17 O -0.370 6.370 18 Si 0.660 3.340 19 C 0.026 3.974 20 N -0.296 5.296 21 C -0.167 4.167 22 H 0.146 0.854 23 H 0.079 0.921 24 H 0.079 0.921 25 H 0.103 0.897 26 H 0.112 0.888 27 H 0.073 0.927 28 H 0.098 0.902 29 H 0.097 0.903 30 H 0.201 0.799 31 H 0.119 0.881 32 H 0.248 0.752 33 H -0.209 1.209 34 H -0.221 1.221 35 H 0.203 0.797 36 H 0.123 0.877 37 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 0.911 -1.231 -2.332 2.790 hybrid contribution 0.929 0.538 1.383 1.751 sum 1.839 -0.694 -0.949 2.183 Atomic orbital electron populations 1.23523 0.75093 1.05591 1.02414 1.86521 1.24702 1.33072 1.83474 1.23991 0.92502 0.81005 0.70960 1.90671 1.67892 1.37485 1.46713 1.22419 0.85900 1.01231 1.02349 0.82557 1.23443 0.97373 0.94776 1.01351 1.22664 0.98349 0.88367 0.87082 0.84554 1.46137 1.01777 1.45854 1.35176 1.21696 0.88664 0.99204 0.95023 1.19581 0.87276 0.87185 0.86465 1.67988 1.24868 1.17077 1.20954 1.23177 0.85473 0.92592 0.94300 1.20819 0.97167 1.05320 1.02302 1.24593 0.95810 1.03651 0.92954 1.86545 1.36432 1.80458 1.33582 0.94338 0.76931 0.77895 0.84787 1.23155 0.92663 0.88631 0.92923 1.67899 1.00931 1.30145 1.30659 1.23472 0.97604 1.01026 0.94631 0.85353 0.92106 0.92051 0.89694 0.88846 0.92725 0.90150 0.90266 0.79918 0.88066 0.75238 1.20942 1.22114 0.79741 0.87711 0.89268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.03 10.56 113.37 1.20 1.17 16 2 O -0.36 -0.97 10.56 -51.35 -0.54 -1.51 16 3 C 0.47 1.85 7.49 71.24 0.53 2.38 16 4 O -0.54 -5.57 15.65 21.98 0.34 -5.23 16 5 C -0.10 0.22 4.26 -10.95 -0.05 0.17 16 6 H 0.16 -1.12 8.14 -2.39 -0.02 -1.14 16 7 C -0.13 0.04 7.00 31.12 0.22 0.26 16 8 C 0.14 -0.02 4.25 45.52 0.19 0.17 16 9 H 0.14 -0.05 7.05 -2.39 -0.02 -0.07 16 10 N -0.58 -2.30 3.19 -708.68 -2.26 -4.56 16 11 C 0.10 0.20 9.57 127.77 1.22 1.42 16 12 C 0.55 4.09 8.18 261.49 2.14 6.22 16 13 N -0.59 -4.55 9.03 -197.99 -1.79 -6.34 16 14 C 0.21 0.82 10.99 84.71 0.93 1.75 16 15 C -0.25 -0.43 5.40 -19.69 -0.11 -0.53 16 16 C -0.06 0.18 2.82 71.24 0.20 0.39 16 17 O -0.56 0.14 12.82 -148.98 -1.91 -1.77 16 18 Si 0.76 -3.30 29.91 68.60 2.05 -1.25 16 19 C 0.19 0.46 9.92 84.71 0.84 1.30 16 20 N -0.57 -3.45 8.97 -197.98 -1.78 -5.23 16 21 C -0.13 0.34 7.17 31.18 0.22 0.56 16 22 H 0.13 -0.84 8.14 -2.39 -0.02 -0.86 16 23 H 0.06 -0.02 8.13 -2.39 -0.02 -0.04 16 24 H 0.06 -0.02 8.13 -2.39 -0.02 -0.04 16 25 H 0.08 0.31 6.65 -2.39 -0.02 0.29 16 26 H 0.09 -0.17 8.14 -2.38 -0.02 -0.18 16 27 H 0.05 0.13 7.98 -2.39 -0.02 0.11 16 28 H 0.08 -0.05 5.85 -2.38 -0.01 -0.06 16 29 H 0.08 0.30 7.17 -2.39 -0.02 0.28 16 30 H 0.18 -0.11 8.06 -2.91 -0.02 -0.13 16 31 H 0.10 -0.77 7.96 -2.39 -0.02 -0.79 16 32 H 0.40 -3.27 8.74 -74.05 -0.65 -3.92 16 33 H -0.28 0.03 7.11 99.48 0.71 0.74 16 34 H -0.29 -0.76 7.07 99.48 0.70 -0.05 16 35 H 0.19 -0.53 5.04 -2.91 -0.01 -0.54 16 36 H 0.10 -0.52 8.14 -2.39 -0.02 -0.54 16 37 H 0.09 -0.13 5.91 -2.39 -0.01 -0.14 16 Total: 0.00 -19.87 311.17 2.16 -17.72 By element: Atomic # 1 Polarization: -7.59 SS G_CDS: 0.49 Total: -7.10 kcal Atomic # 6 Polarization: 7.73 SS G_CDS: 7.55 Total: 15.27 kcal Atomic # 7 Polarization: -10.30 SS G_CDS: -5.82 Total: -16.12 kcal Atomic # 8 Polarization: -6.40 SS G_CDS: -2.11 Total: -8.51 kcal Atomic # 14 Polarization: -3.30 SS G_CDS: 2.05 Total: -1.25 kcal Total: -19.87 2.16 -17.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12109656_12175864.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.192 kcal (2) G-P(sol) polarization free energy of solvation -19.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds