Wall clock time and date at job start Mon Mar 8 2021 03:49:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34231 * 117.00283 * 2 1 4 4 O 1.20829 * 119.99483 * 359.97438 * 3 2 1 5 5 C 1.50692 * 120.00514 * 180.02562 * 3 2 1 6 6 H 1.08995 * 112.91150 * 48.74428 * 5 3 2 7 7 C 1.53781 * 113.61479 * 180.02562 * 5 3 2 8 8 C 1.53786 * 87.08196 * 139.97886 * 7 5 3 9 9 H 1.09001 * 113.61543 * 89.19890 * 8 7 5 10 10 N 1.46497 * 113.61296 * 220.01778 * 8 7 5 11 11 C 1.46492 * 120.00035 * 53.96426 * 10 8 7 12 12 C 1.39001 * 119.99673 * 233.96344 * 10 8 7 13 13 N 1.32398 * 119.71221 * 4.99654 * 12 10 8 14 14 C 1.31966 * 121.63028 * 179.97438 * 13 12 10 15 15 C 1.38023 * 120.85342 * 0.02562 * 14 13 12 16 16 C 1.50697 * 120.33365 * 180.02562 * 15 14 13 17 17 O 1.42901 * 109.47244 * 119.99942 * 16 15 14 18 18 Si 1.86290 * 109.47329 * 359.97438 * 16 15 14 19 19 C 1.38877 * 119.33165 * 359.97438 * 15 14 13 20 20 C 1.38308 * 118.50689 * 0.02562 * 19 15 14 21 21 C 1.53782 * 113.61114 * 277.49648 * 5 3 2 22 22 H 1.09002 * 109.46818 * 299.99814 * 1 2 3 23 23 H 1.08995 * 109.47357 * 59.99745 * 1 2 3 24 24 H 1.08994 * 109.46930 * 180.02562 * 1 2 3 25 25 H 1.08996 * 113.61834 * 25.43053 * 7 5 3 26 26 H 1.09006 * 113.68445 * 254.53515 * 7 5 3 27 27 H 1.09003 * 109.47070 * 264.52116 * 11 10 8 28 28 H 1.08994 * 109.47760 * 24.52597 * 11 10 8 29 29 H 1.08999 * 109.47261 * 144.52890 * 11 10 8 30 30 H 1.07994 * 119.57531 * 179.72398 * 14 13 12 31 31 H 1.09005 * 109.47265 * 239.99661 * 16 15 14 32 32 H 0.96696 * 113.99833 * 299.99926 * 17 16 15 33 33 H 1.48503 * 110.00121 * 180.02562 * 18 16 15 34 34 H 1.48499 * 110.00125 * 301.31805 * 18 16 15 35 35 H 1.08000 * 120.74933 * 179.97438 * 19 15 14 36 36 H 1.07994 * 120.45407 * 179.97438 * 20 19 15 37 37 H 1.08999 * 113.61768 * 105.47088 * 21 5 3 38 38 H 1.08999 * 113.61520 * 334.56429 * 21 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 1 4.0244 0.6362 -0.7556 7 6 4.1077 2.7143 0.0001 8 6 5.1814 2.2263 0.9870 9 1 6.0816 1.8493 0.5016 10 7 5.4708 3.1819 2.0590 11 6 4.3826 3.7008 2.8912 12 6 6.7780 3.5961 2.2866 13 7 7.7429 3.2017 1.4702 14 6 8.9965 3.5725 1.6503 15 6 9.3482 4.3905 2.7049 16 6 10.7833 4.8072 2.8992 17 8 10.8781 6.2318 2.8385 18 14 11.8351 4.0565 1.5574 19 6 8.3660 4.8265 3.5846 20 6 7.0610 4.4215 3.3704 21 6 4.1916 1.1233 1.3962 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 3.4174 3.4402 0.4297 26 1 4.5106 3.0310 -0.9619 27 1 4.0457 4.6581 2.4932 28 1 3.5533 2.9937 2.8874 29 1 4.7392 3.8372 3.9121 30 1 9.7579 3.2275 0.9665 31 1 11.1338 4.4610 3.8716 32 1 10.5823 6.6102 1.9992 33 1 13.2529 4.4594 1.7381 34 1 11.7201 2.5763 1.5902 35 1 8.6156 5.4668 4.4178 36 1 6.2724 4.7416 4.0352 37 1 4.6621 0.1540 1.5611 38 1 3.5242 1.4145 2.2073 There are 51 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 51 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_12109656_13915762.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 03:49:43 Heat of formation + Delta-G solvation = -29.100642 kcal Electronic energy + Delta-G solvation = -21585.043775 eV Core-core repulsion = 18203.018962 eV Total energy + Delta-G solvation = -3382.024813 eV No. of doubly occupied orbitals = 51 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.01998 -41.34405 -39.89103 -37.93816 -37.35459 -36.00222 -33.46158 -31.76329 -29.53325 -28.47032 -27.19308 -26.87003 -25.32044 -24.55230 -22.73867 -21.65771 -20.32562 -19.27169 -18.61127 -18.19773 -17.69318 -17.43156 -17.17196 -16.41870 -16.33960 -16.13896 -15.73453 -15.63706 -15.43898 -14.44045 -14.38856 -14.24858 -14.16070 -14.06780 -13.71485 -13.44519 -13.28048 -13.07549 -12.97553 -12.37561 -12.34482 -12.17287 -11.97617 -11.84946 -11.79568 -11.30775 -10.94217 -10.67804 -10.37765 -10.33266 -8.56376 -5.02902 0.24849 0.42675 1.14972 1.31846 1.59470 1.63344 1.93836 1.98827 2.84008 3.20381 3.30310 3.41395 3.51038 3.64434 3.70789 3.79105 3.92203 4.00757 4.03345 4.13635 4.14813 4.22045 4.25386 4.40296 4.46450 4.49818 4.54053 4.57993 4.59003 4.66223 4.76675 4.77554 4.86578 4.97139 5.16326 5.33370 5.37815 5.58299 5.85710 6.34405 6.60000 6.72927 7.11815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.357 6.357 3 C 0.471 3.529 4 O -0.504 6.504 5 C -0.108 4.108 6 H 0.131 0.869 7 C -0.133 4.133 8 C 0.140 3.860 9 H 0.132 0.868 10 N -0.597 5.597 11 C 0.088 3.912 12 C 0.408 3.592 13 N -0.537 5.537 14 C 0.155 3.845 15 C -0.235 4.235 16 C -0.052 4.052 17 O -0.543 6.543 18 Si 0.682 3.318 19 C -0.005 4.005 20 C -0.237 4.237 21 C -0.138 4.138 22 H 0.063 0.937 23 H 0.064 0.936 24 H 0.103 0.897 25 H 0.100 0.900 26 H 0.085 0.915 27 H 0.057 0.943 28 H 0.077 0.923 29 H 0.072 0.928 30 H 0.155 0.845 31 H 0.112 0.888 32 H 0.379 0.621 33 H -0.254 1.254 34 H -0.256 1.256 35 H 0.136 0.864 36 H 0.135 0.865 37 H 0.089 0.911 38 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.289 -1.196 -0.798 1.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.274 6.274 3 C 0.314 3.686 4 O -0.392 6.392 5 C -0.128 4.128 6 H 0.149 0.851 7 C -0.172 4.172 8 C 0.035 3.965 9 H 0.150 0.850 10 N -0.309 5.309 11 C -0.055 4.055 12 C 0.174 3.826 13 N -0.253 5.253 14 C -0.003 4.003 15 C -0.240 4.240 16 C -0.164 4.164 17 O -0.348 6.348 18 Si 0.585 3.415 19 C -0.031 4.031 20 C -0.261 4.261 21 C -0.177 4.177 22 H 0.082 0.918 23 H 0.083 0.917 24 H 0.121 0.879 25 H 0.118 0.882 26 H 0.104 0.896 27 H 0.076 0.924 28 H 0.095 0.905 29 H 0.090 0.910 30 H 0.171 0.829 31 H 0.129 0.871 32 H 0.226 0.774 33 H -0.179 1.179 34 H -0.181 1.181 35 H 0.154 0.846 36 H 0.153 0.847 37 H 0.108 0.892 38 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -1.026 -2.104 -1.088 2.581 hybrid contribution -0.487 0.464 1.254 1.423 sum -1.513 -1.640 0.166 2.238 Atomic orbital electron populations 1.23318 0.75983 1.04000 1.02687 1.86523 1.23688 1.33339 1.83801 1.23521 0.91622 0.81398 0.72062 1.90684 1.66976 1.36449 1.45055 1.22308 0.87523 1.01430 1.01535 0.85132 1.23517 0.97861 0.94459 1.01385 1.22481 0.97863 0.88455 0.87678 0.84991 1.46271 1.02880 1.46456 1.35270 1.21762 0.89513 0.99505 0.94726 1.18354 0.85454 0.89591 0.89199 1.67099 1.00550 1.27917 1.29772 1.22214 0.91881 0.92034 0.94129 1.20991 0.97491 1.05490 1.00061 1.24783 0.96449 0.86155 1.09041 1.86489 1.88311 1.18249 1.41743 0.94853 0.79720 0.80488 0.86474 1.21184 0.91190 0.94049 0.96658 1.21507 0.98285 1.05601 1.00740 1.23492 0.98306 1.01017 0.94840 0.91815 0.91718 0.87852 0.88206 0.89647 0.92409 0.90486 0.90981 0.82856 0.87114 0.77424 1.17867 1.18087 0.84645 0.84749 0.89212 0.88971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.02 10.56 101.05 1.07 1.04 16 2 O -0.36 -0.46 10.57 -39.26 -0.41 -0.87 16 3 C 0.47 0.78 7.48 36.00 0.27 1.05 16 4 O -0.50 -2.23 15.65 -18.75 -0.29 -2.52 16 5 C -0.11 0.11 4.26 -90.96 -0.39 -0.28 16 6 H 0.13 -0.36 8.14 -51.93 -0.42 -0.78 16 7 C -0.13 0.07 6.99 -25.92 -0.18 -0.11 16 8 C 0.14 -0.09 4.26 -67.14 -0.29 -0.37 16 9 H 0.13 -0.02 7.12 -51.93 -0.37 -0.39 16 10 N -0.60 -0.08 3.20 -173.18 -0.55 -0.64 16 11 C 0.09 -0.15 9.14 59.84 0.55 0.40 16 12 C 0.41 0.65 7.37 -155.02 -1.14 -0.50 16 13 N -0.54 -1.14 8.99 -12.44 -0.11 -1.25 16 14 C 0.16 0.11 9.84 -17.57 -0.17 -0.06 16 15 C -0.24 -0.09 5.40 -104.47 -0.56 -0.65 16 16 C -0.05 0.02 2.83 36.00 0.10 0.12 16 17 O -0.54 -0.09 12.78 -35.23 -0.45 -0.54 16 18 Si 0.68 -0.77 29.82 -169.99 -5.07 -5.84 16 19 C -0.01 0.00 9.76 -39.32 -0.38 -0.39 16 20 C -0.24 -0.14 9.26 -39.22 -0.36 -0.51 16 21 C -0.14 0.21 7.11 -25.94 -0.18 0.03 16 22 H 0.06 -0.04 8.13 -51.93 -0.42 -0.47 16 23 H 0.06 -0.03 8.13 -51.93 -0.42 -0.46 16 24 H 0.10 -0.31 8.14 -51.93 -0.42 -0.73 16 25 H 0.10 0.08 6.76 -51.93 -0.35 -0.27 16 26 H 0.08 -0.07 8.14 -51.93 -0.42 -0.50 16 27 H 0.06 -0.10 8.14 -51.93 -0.42 -0.52 16 28 H 0.08 -0.17 5.78 -51.93 -0.30 -0.47 16 29 H 0.07 -0.19 6.27 -51.93 -0.33 -0.51 16 30 H 0.15 -0.20 4.88 -52.49 -0.26 -0.45 16 31 H 0.11 0.01 7.96 -51.93 -0.41 -0.40 16 32 H 0.38 -1.32 8.70 45.56 0.40 -0.93 16 33 H -0.25 -0.54 7.11 56.52 0.40 -0.14 16 34 H -0.26 -0.28 7.11 56.52 0.40 0.12 16 35 H 0.14 -0.06 8.06 -52.49 -0.42 -0.48 16 36 H 0.13 -0.15 6.14 -52.49 -0.32 -0.47 16 37 H 0.09 -0.19 8.14 -51.93 -0.42 -0.62 16 38 H 0.09 -0.13 5.94 -51.93 -0.31 -0.43 16 LS Contribution 314.08 15.07 4.73 4.73 Total: 0.00 -7.39 314.08 -8.67 -16.06 By element: Atomic # 1 Polarization: -4.08 SS G_CDS: -4.83 Total: -8.91 kcal Atomic # 6 Polarization: 1.46 SS G_CDS: -1.68 Total: -0.22 kcal Atomic # 7 Polarization: -1.22 SS G_CDS: -0.67 Total: -1.89 kcal Atomic # 8 Polarization: -2.78 SS G_CDS: -1.16 Total: -3.93 kcal Atomic # 14 Polarization: -0.77 SS G_CDS: -5.07 Total: -5.84 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -7.39 -8.67 -16.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12109656_13915762.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.040 kcal (2) G-P(sol) polarization free energy of solvation -7.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds