Wall clock time and date at job start Mon Mar 8 2021 03:49:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34231 * 117.00283 * 2 1 4 4 O 1.20829 * 119.99483 * 359.97438 * 3 2 1 5 5 C 1.50692 * 120.00514 * 180.02562 * 3 2 1 6 6 H 1.08995 * 112.91150 * 48.74428 * 5 3 2 7 7 C 1.53781 * 113.61479 * 180.02562 * 5 3 2 8 8 C 1.53786 * 87.08196 * 139.97886 * 7 5 3 9 9 H 1.09001 * 113.61543 * 89.19890 * 8 7 5 10 10 N 1.46497 * 113.61296 * 220.01778 * 8 7 5 11 11 C 1.46492 * 120.00035 * 53.96426 * 10 8 7 12 12 C 1.39001 * 119.99673 * 233.96344 * 10 8 7 13 13 N 1.32398 * 119.71221 * 4.99654 * 12 10 8 14 14 C 1.31966 * 121.63028 * 179.97438 * 13 12 10 15 15 C 1.38023 * 120.85342 * 0.02562 * 14 13 12 16 16 C 1.50697 * 120.33365 * 180.02562 * 15 14 13 17 17 O 1.42901 * 109.47244 * 119.99942 * 16 15 14 18 18 Si 1.86290 * 109.47329 * 359.97438 * 16 15 14 19 19 C 1.38877 * 119.33165 * 359.97438 * 15 14 13 20 20 C 1.38308 * 118.50689 * 0.02562 * 19 15 14 21 21 C 1.53782 * 113.61114 * 277.49648 * 5 3 2 22 22 H 1.09002 * 109.46818 * 299.99814 * 1 2 3 23 23 H 1.08995 * 109.47357 * 59.99745 * 1 2 3 24 24 H 1.08994 * 109.46930 * 180.02562 * 1 2 3 25 25 H 1.08996 * 113.61834 * 25.43053 * 7 5 3 26 26 H 1.09006 * 113.68445 * 254.53515 * 7 5 3 27 27 H 1.09003 * 109.47070 * 264.52116 * 11 10 8 28 28 H 1.08994 * 109.47760 * 24.52597 * 11 10 8 29 29 H 1.08999 * 109.47261 * 144.52890 * 11 10 8 30 30 H 1.07994 * 119.57531 * 179.72398 * 14 13 12 31 31 H 1.09005 * 109.47265 * 239.99661 * 16 15 14 32 32 H 0.96696 * 113.99833 * 299.99926 * 17 16 15 33 33 H 1.48503 * 110.00121 * 180.02562 * 18 16 15 34 34 H 1.48499 * 110.00125 * 301.31805 * 18 16 15 35 35 H 1.08000 * 120.74933 * 179.97438 * 19 15 14 36 36 H 1.07994 * 120.45407 * 179.97438 * 20 19 15 37 37 H 1.08999 * 113.61768 * 105.47088 * 21 5 3 38 38 H 1.08999 * 113.61520 * 334.56429 * 21 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 1 4.0244 0.6362 -0.7556 7 6 4.1077 2.7143 0.0001 8 6 5.1814 2.2263 0.9870 9 1 6.0816 1.8493 0.5016 10 7 5.4708 3.1819 2.0590 11 6 4.3826 3.7008 2.8912 12 6 6.7780 3.5961 2.2866 13 7 7.7429 3.2017 1.4702 14 6 8.9965 3.5725 1.6503 15 6 9.3482 4.3905 2.7049 16 6 10.7833 4.8072 2.8992 17 8 10.8781 6.2318 2.8385 18 14 11.8351 4.0565 1.5574 19 6 8.3660 4.8265 3.5846 20 6 7.0610 4.4215 3.3704 21 6 4.1916 1.1233 1.3962 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 3.4174 3.4402 0.4297 26 1 4.5106 3.0310 -0.9619 27 1 4.0457 4.6581 2.4932 28 1 3.5533 2.9937 2.8874 29 1 4.7392 3.8372 3.9121 30 1 9.7579 3.2275 0.9665 31 1 11.1338 4.4610 3.8716 32 1 10.5823 6.6102 1.9992 33 1 13.2529 4.4594 1.7381 34 1 11.7201 2.5763 1.5902 35 1 8.6156 5.4668 4.4178 36 1 6.2724 4.7416 4.0352 37 1 4.6621 0.1540 1.5611 38 1 3.5242 1.4145 2.2073 There are 51 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 51 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_12109656_13915762.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 03:49:42 Heat of formation + Delta-G solvation = -25.842059 kcal Electronic energy + Delta-G solvation = -21584.902473 eV Core-core repulsion = 18203.018962 eV Total energy + Delta-G solvation = -3381.883510 eV No. of doubly occupied orbitals = 51 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.05586 -41.37849 -39.88183 -37.93170 -37.46805 -35.97974 -33.47568 -31.75322 -29.50958 -28.40121 -27.16319 -26.79877 -25.30131 -24.56281 -22.75414 -21.68628 -20.26817 -19.28556 -18.61556 -18.25854 -17.68674 -17.48707 -17.19444 -16.41090 -16.28653 -16.11955 -15.69421 -15.59872 -15.41082 -14.46069 -14.40955 -14.28978 -14.16747 -14.06771 -13.67144 -13.40703 -13.23854 -13.00368 -12.90279 -12.33924 -12.31598 -12.17661 -12.07385 -11.86385 -11.77237 -11.37883 -10.93441 -10.69304 -10.37402 -10.34835 -8.54424 -4.97027 0.23377 0.40200 1.04776 1.36185 1.61446 1.65510 1.97952 1.99396 2.82059 3.25089 3.37382 3.45127 3.59938 3.71162 3.78718 3.80754 3.95822 4.03405 4.09529 4.20039 4.25121 4.27258 4.32227 4.49751 4.55963 4.57699 4.59671 4.64600 4.67472 4.74802 4.81652 4.89018 4.94115 4.99017 5.20659 5.32336 5.33735 5.60353 5.91427 6.35269 6.63885 6.80853 7.09971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.362 6.362 3 C 0.471 3.529 4 O -0.538 6.538 5 C -0.103 4.103 6 H 0.152 0.848 7 C -0.132 4.132 8 C 0.140 3.860 9 H 0.129 0.871 10 N -0.600 5.600 11 C 0.086 3.914 12 C 0.393 3.607 13 N -0.555 5.555 14 C 0.147 3.853 15 C -0.236 4.236 16 C -0.055 4.055 17 O -0.557 6.557 18 Si 0.767 3.233 19 C -0.012 4.012 20 C -0.241 4.241 21 C -0.129 4.129 22 H 0.061 0.939 23 H 0.060 0.940 24 H 0.128 0.872 25 H 0.085 0.915 26 H 0.087 0.913 27 H 0.056 0.944 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.169 0.831 31 H 0.106 0.894 32 H 0.394 0.606 33 H -0.299 1.299 34 H -0.284 1.284 35 H 0.143 0.857 36 H 0.149 0.851 37 H 0.100 0.900 38 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.332 -1.605 -0.819 2.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.278 6.278 3 C 0.316 3.684 4 O -0.428 6.428 5 C -0.122 4.122 6 H 0.170 0.830 7 C -0.171 4.171 8 C 0.036 3.964 9 H 0.147 0.853 10 N -0.311 5.311 11 C -0.057 4.057 12 C 0.159 3.841 13 N -0.272 5.272 14 C -0.010 4.010 15 C -0.241 4.241 16 C -0.166 4.166 17 O -0.365 6.365 18 Si 0.674 3.326 19 C -0.038 4.038 20 C -0.266 4.266 21 C -0.168 4.168 22 H 0.080 0.920 23 H 0.079 0.921 24 H 0.146 0.854 25 H 0.103 0.897 26 H 0.106 0.894 27 H 0.075 0.925 28 H 0.099 0.901 29 H 0.101 0.899 30 H 0.186 0.814 31 H 0.123 0.877 32 H 0.244 0.756 33 H -0.227 1.227 34 H -0.211 1.211 35 H 0.161 0.839 36 H 0.166 0.834 37 H 0.119 0.881 38 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -1.102 -2.511 -1.115 2.960 hybrid contribution -0.480 0.592 1.275 1.485 sum -1.582 -1.919 0.160 2.492 Atomic orbital electron populations 1.23522 0.75085 1.05588 1.02422 1.86524 1.24719 1.33125 1.83476 1.24015 0.92513 0.80992 0.70930 1.90668 1.67888 1.37461 1.46762 1.22413 0.85850 1.01439 1.02522 0.83035 1.23456 0.97627 0.94525 1.01449 1.22459 0.97706 0.88645 0.87610 0.85339 1.46407 1.02781 1.46449 1.35483 1.21849 0.89253 0.99517 0.95048 1.18602 0.85891 0.90031 0.89579 1.67110 1.01102 1.28591 1.30356 1.22481 0.91937 0.92061 0.94563 1.21048 0.97719 1.05371 0.99970 1.24867 0.96307 0.86208 1.09243 1.86452 1.88459 1.18369 1.43229 0.93839 0.76139 0.77531 0.85101 1.21368 0.91316 0.94176 0.96957 1.21685 0.98770 1.05374 1.00756 1.23447 0.97763 1.01184 0.94386 0.92029 0.92096 0.85376 0.89658 0.89439 0.92529 0.90061 0.89945 0.81402 0.87664 0.75630 1.22652 1.21051 0.83894 0.83384 0.88141 0.89164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.04 10.56 113.37 1.20 1.16 16 2 O -0.36 -0.89 10.57 -51.43 -0.54 -1.43 16 3 C 0.47 1.71 7.48 71.23 0.53 2.24 16 4 O -0.54 -5.29 15.65 21.95 0.34 -4.95 16 5 C -0.10 0.23 4.26 -11.02 -0.05 0.19 16 6 H 0.15 -0.99 8.14 -2.39 -0.02 -1.01 16 7 C -0.13 0.10 6.99 31.12 0.22 0.31 16 8 C 0.14 -0.17 4.26 45.51 0.19 0.02 16 9 H 0.13 -0.04 7.12 -2.39 -0.02 -0.06 16 10 N -0.60 -0.24 3.20 -701.81 -2.25 -2.49 16 11 C 0.09 -0.27 9.14 127.77 1.17 0.89 16 12 C 0.39 1.28 7.37 133.07 0.98 2.27 16 13 N -0.55 -2.42 8.99 -193.27 -1.74 -4.15 16 14 C 0.15 0.21 9.84 84.62 0.83 1.04 16 15 C -0.24 -0.16 5.40 -19.76 -0.11 -0.26 16 16 C -0.06 0.04 2.83 71.24 0.20 0.24 16 17 O -0.56 -0.01 12.78 -148.98 -1.90 -1.91 16 18 Si 0.77 -1.67 29.82 68.60 2.05 0.38 16 19 C -0.01 -0.01 9.76 22.44 0.22 0.21 16 20 C -0.24 -0.28 9.26 22.50 0.21 -0.07 16 21 C -0.13 0.45 7.11 31.11 0.22 0.67 16 22 H 0.06 -0.06 8.13 -2.39 -0.02 -0.08 16 23 H 0.06 -0.04 8.13 -2.39 -0.02 -0.06 16 24 H 0.13 -0.88 8.14 -2.39 -0.02 -0.90 16 25 H 0.08 0.22 6.76 -2.39 -0.02 0.21 16 26 H 0.09 -0.12 8.14 -2.38 -0.02 -0.14 16 27 H 0.06 -0.16 8.14 -2.39 -0.02 -0.18 16 28 H 0.08 -0.33 5.78 -2.39 -0.01 -0.35 16 29 H 0.08 -0.45 6.27 -2.39 -0.01 -0.47 16 30 H 0.17 -0.48 4.88 -2.91 -0.01 -0.50 16 31 H 0.11 0.04 7.96 -2.38 -0.02 0.02 16 32 H 0.39 -2.98 8.70 -74.06 -0.64 -3.62 16 33 H -0.30 -1.59 7.11 99.48 0.71 -0.89 16 34 H -0.28 -0.68 7.11 99.48 0.71 0.03 16 35 H 0.14 -0.15 8.06 -2.91 -0.02 -0.18 16 36 H 0.15 -0.38 6.14 -2.91 -0.02 -0.40 16 37 H 0.10 -0.53 8.14 -2.39 -0.02 -0.55 16 38 H 0.09 -0.26 5.94 -2.39 -0.01 -0.27 16 Total: 0.00 -17.31 314.08 2.26 -15.05 By element: Atomic # 1 Polarization: -9.88 SS G_CDS: 0.48 Total: -9.39 kcal Atomic # 6 Polarization: 3.08 SS G_CDS: 5.82 Total: 8.90 kcal Atomic # 7 Polarization: -2.66 SS G_CDS: -3.99 Total: -6.64 kcal Atomic # 8 Polarization: -6.19 SS G_CDS: -2.10 Total: -8.29 kcal Atomic # 14 Polarization: -1.67 SS G_CDS: 2.05 Total: 0.38 kcal Total: -17.31 2.26 -15.05 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12109656_13915762.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.790 kcal (2) G-P(sol) polarization free energy of solvation -17.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds