Wall clock time and date at job start Mon Mar 8 2021 03:49:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34232 * 116.99915 * 2 1 4 4 O 1.20830 * 119.99833 * 359.97438 * 3 2 1 5 5 C 1.50691 * 119.99966 * 179.97438 * 3 2 1 6 6 H 1.09005 * 112.85228 * 311.19203 * 5 3 2 7 7 C 1.53781 * 113.69216 * 82.46317 * 5 3 2 8 8 C 1.54051 * 87.07885 * 139.98792 * 7 5 3 9 9 H 1.08993 * 113.61629 * 89.07519 * 8 7 5 10 10 N 1.46502 * 113.69707 * 220.05743 * 8 7 5 11 11 C 1.46493 * 120.00182 * 43.38626 * 10 8 7 12 12 C 1.38612 * 119.99775 * 223.39072 * 10 8 7 13 13 N 1.29693 * 124.95074 * 0.02562 * 12 10 8 14 14 C 1.32119 * 116.86699 * 179.97438 * 13 12 10 15 15 C 1.33329 * 114.57811 * 359.97438 * 14 13 12 16 16 C 1.50699 * 125.95116 * 180.02562 * 15 14 13 17 17 O 1.42901 * 109.47630 * 119.97456 * 16 15 14 18 18 Si 1.86304 * 109.46982 * 359.97438 * 16 15 14 19 19 S 1.70964 * 124.94951 * 179.71707 * 12 10 8 20 20 C 1.53784 * 113.61307 * 179.97438 * 5 3 2 21 21 H 1.09004 * 109.47158 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47749 * 300.00190 * 1 2 3 23 23 H 1.09004 * 109.47533 * 60.00647 * 1 2 3 24 24 H 1.09001 * 113.61618 * 254.53915 * 7 5 3 25 25 H 1.09003 * 113.61295 * 25.35989 * 7 5 3 26 26 H 1.08998 * 109.47045 * 93.08992 * 11 10 8 27 27 H 1.09003 * 109.47258 * 213.08820 * 11 10 8 28 28 H 1.09000 * 109.47147 * 333.08729 * 11 10 8 29 29 H 1.07996 * 122.71429 * 180.02562 * 14 13 12 30 30 H 1.09004 * 109.47090 * 239.97539 * 16 15 14 31 31 H 0.96704 * 113.99417 * 300.00567 * 17 16 15 32 32 H 1.48493 * 110.00175 * 58.68339 * 18 16 15 33 33 H 1.48506 * 109.99645 * 180.02562 * 18 16 15 34 34 H 1.08996 * 113.61702 * 334.48716 * 20 5 3 35 35 H 1.09002 * 113.61738 * 105.30383 * 20 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5662 1.2749 0.0006 6 1 4.0233 0.6366 0.7568 7 6 4.1935 1.1225 -1.3952 8 6 5.1843 2.2282 -0.9841 9 1 6.0829 1.8501 -0.4967 10 7 5.4758 3.1852 -2.0543 11 6 4.3897 3.7031 -2.8897 12 6 6.7795 3.6006 -2.2764 13 7 7.8112 3.2049 -1.5974 14 6 8.9833 3.7045 -1.9468 15 6 8.9390 4.5608 -2.9679 16 6 10.1183 5.2776 -3.5732 17 8 10.2347 4.9228 -4.9526 18 14 11.6732 4.7859 -2.6723 19 16 7.2626 4.7034 -3.4901 20 6 4.1076 2.7143 -0.0001 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8899 23 1 -0.3634 0.5137 -0.8900 24 1 4.6642 0.1531 -1.5589 25 1 3.5267 1.4119 -2.2075 26 1 4.0213 4.6383 -2.4681 27 1 4.7608 3.8809 -3.8991 28 1 3.5788 2.9755 -2.9237 29 1 9.9031 3.4401 -1.4464 30 1 9.9729 6.3544 -3.4861 31 1 10.3663 3.9771 -5.1056 32 1 11.8658 3.3160 -2.7566 33 1 12.8435 5.4866 -3.2595 34 1 3.4179 3.4400 -0.4310 35 1 4.5076 3.0309 0.9631 There are 49 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 49 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_12109656_15704118.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 03:49:45 Heat of formation + Delta-G solvation = -22.338852 kcal Electronic energy + Delta-G solvation = -20150.096052 eV Core-core repulsion = 16857.516698 eV Total energy + Delta-G solvation = -3292.579354 eV No. of doubly occupied orbitals = 49 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 285.087 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.00246 -40.83732 -39.86223 -37.99627 -37.42843 -36.09289 -31.76537 -29.62455 -28.55836 -27.42850 -26.95713 -25.53629 -24.48196 -22.44268 -20.85632 -20.24478 -19.60589 -18.74948 -17.96751 -17.74421 -17.44402 -17.20612 -16.60508 -16.33088 -16.00061 -15.95781 -15.56732 -14.87836 -14.57320 -14.42011 -14.29386 -13.87304 -13.75718 -13.61917 -13.24053 -13.04897 -12.89223 -12.52729 -12.30745 -12.24435 -11.94365 -11.87951 -11.82249 -11.36482 -10.98351 -10.65186 -10.45333 -10.08436 -8.63347 -4.96736 -0.04013 0.09948 0.75784 1.11003 1.42219 1.57087 1.60843 1.85161 1.96760 1.98619 3.10983 3.22298 3.34281 3.48096 3.53874 3.62584 3.86950 3.92834 4.00461 4.12565 4.19952 4.22000 4.31946 4.38616 4.43768 4.48089 4.54600 4.57406 4.65222 4.69122 4.78959 4.95508 5.18521 5.34560 5.57366 5.96382 6.37353 6.69200 6.92311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.357 6.357 3 C 0.472 3.528 4 O -0.504 6.504 5 C -0.108 4.108 6 H 0.132 0.868 7 C -0.136 4.136 8 C 0.143 3.857 9 H 0.133 0.867 10 N -0.569 5.569 11 C 0.083 3.917 12 C 0.315 3.685 13 N -0.549 5.549 14 C 0.097 3.903 15 C -0.305 4.305 16 C -0.030 4.030 17 O -0.531 6.531 18 Si 0.699 3.301 19 S 0.126 5.874 20 C -0.133 4.133 21 H 0.103 0.897 22 H 0.064 0.936 23 H 0.063 0.937 24 H 0.092 0.908 25 H 0.093 0.907 26 H 0.065 0.935 27 H 0.072 0.928 28 H 0.086 0.914 29 H 0.175 0.825 30 H 0.118 0.882 31 H 0.377 0.623 32 H -0.256 1.256 33 H -0.254 1.254 34 H 0.102 0.898 35 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.204 -1.835 1.252 2.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.273 6.273 3 C 0.314 3.686 4 O -0.391 6.391 5 C -0.127 4.127 6 H 0.150 0.850 7 C -0.175 4.175 8 C 0.037 3.963 9 H 0.150 0.850 10 N -0.286 5.286 11 C -0.059 4.059 12 C -0.054 4.054 13 N -0.274 5.274 14 C -0.054 4.054 15 C -0.428 4.428 16 C -0.142 4.142 17 O -0.337 6.337 18 Si 0.598 3.402 19 S 0.377 5.623 20 C -0.172 4.172 21 H 0.122 0.878 22 H 0.083 0.917 23 H 0.082 0.918 24 H 0.110 0.890 25 H 0.112 0.888 26 H 0.084 0.916 27 H 0.090 0.910 28 H 0.104 0.896 29 H 0.192 0.808 30 H 0.135 0.865 31 H 0.224 0.776 32 H -0.180 1.180 33 H -0.178 1.178 34 H 0.120 0.880 35 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -1.521 -1.115 0.741 2.026 hybrid contribution 0.026 -0.933 -0.429 1.027 sum -1.495 -2.047 0.313 2.554 Atomic orbital electron populations 1.23327 0.75907 1.04042 1.02714 1.86522 1.23739 1.33268 1.83772 1.23472 0.91555 0.81437 0.72119 1.90689 1.66953 1.36437 1.45010 1.22283 0.87676 1.01291 1.01491 0.85007 1.23540 0.98079 1.00919 0.94972 1.22639 0.98087 0.88251 0.87354 0.84963 1.45847 1.01071 1.46278 1.35429 1.21888 0.89720 1.00187 0.94128 1.23707 0.90007 0.96312 0.95343 1.66393 0.97500 1.31548 1.31970 1.21301 0.95542 0.93832 0.94761 1.25916 0.97871 1.11806 1.07222 1.24375 1.01343 1.02381 0.86106 1.86606 1.94185 1.30055 1.22849 0.94907 0.75185 0.81076 0.89056 1.84122 1.01599 1.43406 1.33135 1.23519 0.97655 0.94663 1.01351 0.87820 0.91701 0.91777 0.88952 0.88831 0.91618 0.90963 0.89564 0.80820 0.86454 0.77564 1.18017 1.17809 0.88003 0.89437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.03 10.56 101.05 1.07 1.03 16 2 O -0.36 -0.32 10.57 -39.26 -0.41 -0.74 16 3 C 0.47 0.56 7.49 36.00 0.27 0.83 16 4 O -0.50 -2.00 15.65 -18.75 -0.29 -2.29 16 5 C -0.11 0.17 4.26 -90.96 -0.39 -0.22 16 6 H 0.13 -0.43 8.14 -51.93 -0.42 -0.85 16 7 C -0.14 0.29 7.14 -25.78 -0.18 0.10 16 8 C 0.14 -0.15 4.34 -66.99 -0.29 -0.44 16 9 H 0.13 -0.06 7.39 -51.93 -0.38 -0.44 16 10 N -0.57 0.02 3.19 -175.19 -0.56 -0.54 16 11 C 0.08 -0.16 9.38 59.84 0.56 0.41 16 12 C 0.31 0.53 7.75 -87.67 -0.68 -0.15 16 13 N -0.55 -1.41 9.68 -15.21 -0.15 -1.56 16 14 C 0.10 0.11 10.07 -19.14 -0.19 -0.08 16 15 C -0.30 -0.29 5.93 -36.02 -0.21 -0.50 16 16 C -0.03 0.00 3.08 36.00 0.11 0.11 16 17 O -0.53 -0.78 12.88 -35.23 -0.45 -1.24 16 18 Si 0.70 -0.81 30.49 -169.99 -5.18 -5.99 16 19 S 0.13 0.14 21.74 -107.50 -2.34 -2.20 16 20 C -0.13 0.14 6.98 -25.93 -0.18 -0.04 16 21 H 0.10 -0.34 8.14 -51.93 -0.42 -0.76 16 22 H 0.06 -0.05 8.13 -51.93 -0.42 -0.48 16 23 H 0.06 -0.06 8.13 -51.93 -0.42 -0.49 16 24 H 0.09 -0.25 8.14 -51.93 -0.42 -0.67 16 25 H 0.09 -0.19 5.94 -51.93 -0.31 -0.50 16 26 H 0.07 -0.14 8.14 -51.93 -0.42 -0.56 16 27 H 0.07 -0.16 7.17 -51.93 -0.37 -0.53 16 28 H 0.09 -0.24 5.78 -51.93 -0.30 -0.54 16 29 H 0.18 -0.18 5.85 -52.49 -0.31 -0.49 16 30 H 0.12 -0.05 7.96 -51.93 -0.41 -0.47 16 31 H 0.38 -0.47 8.70 45.56 0.40 -0.08 16 32 H -0.26 -0.19 7.11 56.52 0.40 0.21 16 33 H -0.25 -0.50 7.11 56.52 0.40 -0.10 16 34 H 0.10 0.01 6.76 -51.93 -0.35 -0.34 16 35 H 0.09 -0.12 8.14 -51.93 -0.42 -0.54 16 LS Contribution 307.89 15.07 4.64 4.64 Total: 0.00 -7.42 307.89 -9.06 -16.48 By element: Atomic # 1 Polarization: -3.43 SS G_CDS: -4.20 Total: -7.63 kcal Atomic # 6 Polarization: 1.18 SS G_CDS: -0.12 Total: 1.06 kcal Atomic # 7 Polarization: -1.39 SS G_CDS: -0.71 Total: -2.10 kcal Atomic # 8 Polarization: -3.10 SS G_CDS: -1.16 Total: -4.26 kcal Atomic # 14 Polarization: -0.81 SS G_CDS: -5.18 Total: -5.99 kcal Atomic # 16 Polarization: 0.14 SS G_CDS: -2.34 Total: -2.20 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -7.42 -9.06 -16.48 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12109656_15704118.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.856 kcal (2) G-P(sol) polarization free energy of solvation -7.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds