Wall clock time and date at job start Mon Mar 8 2021 03:49:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34232 * 116.99915 * 2 1 4 4 O 1.20830 * 119.99833 * 359.97438 * 3 2 1 5 5 C 1.50691 * 119.99966 * 179.97438 * 3 2 1 6 6 H 1.09005 * 112.85228 * 311.19203 * 5 3 2 7 7 C 1.53781 * 113.69216 * 82.46317 * 5 3 2 8 8 C 1.54051 * 87.07885 * 139.98792 * 7 5 3 9 9 H 1.08993 * 113.61629 * 89.07519 * 8 7 5 10 10 N 1.46502 * 113.69707 * 220.05743 * 8 7 5 11 11 C 1.46493 * 120.00182 * 43.38626 * 10 8 7 12 12 C 1.38612 * 119.99775 * 223.39072 * 10 8 7 13 13 N 1.29693 * 124.95074 * 0.02562 * 12 10 8 14 14 C 1.32119 * 116.86699 * 179.97438 * 13 12 10 15 15 C 1.33329 * 114.57811 * 359.97438 * 14 13 12 16 16 C 1.50699 * 125.95116 * 180.02562 * 15 14 13 17 17 O 1.42901 * 109.47630 * 119.97456 * 16 15 14 18 18 Si 1.86304 * 109.46982 * 359.97438 * 16 15 14 19 19 S 1.70964 * 124.94951 * 179.71707 * 12 10 8 20 20 C 1.53784 * 113.61307 * 179.97438 * 5 3 2 21 21 H 1.09004 * 109.47158 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47749 * 300.00190 * 1 2 3 23 23 H 1.09004 * 109.47533 * 60.00647 * 1 2 3 24 24 H 1.09001 * 113.61618 * 254.53915 * 7 5 3 25 25 H 1.09003 * 113.61295 * 25.35989 * 7 5 3 26 26 H 1.08998 * 109.47045 * 93.08992 * 11 10 8 27 27 H 1.09003 * 109.47258 * 213.08820 * 11 10 8 28 28 H 1.09000 * 109.47147 * 333.08729 * 11 10 8 29 29 H 1.07996 * 122.71429 * 180.02562 * 14 13 12 30 30 H 1.09004 * 109.47090 * 239.97539 * 16 15 14 31 31 H 0.96704 * 113.99417 * 300.00567 * 17 16 15 32 32 H 1.48493 * 110.00175 * 58.68339 * 18 16 15 33 33 H 1.48506 * 109.99645 * 180.02562 * 18 16 15 34 34 H 1.08996 * 113.61702 * 334.48716 * 20 5 3 35 35 H 1.09002 * 113.61738 * 105.30383 * 20 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5662 1.2749 0.0006 6 1 4.0233 0.6366 0.7568 7 6 4.1935 1.1225 -1.3952 8 6 5.1843 2.2282 -0.9841 9 1 6.0829 1.8501 -0.4967 10 7 5.4758 3.1852 -2.0543 11 6 4.3897 3.7031 -2.8897 12 6 6.7795 3.6006 -2.2764 13 7 7.8112 3.2049 -1.5974 14 6 8.9833 3.7045 -1.9468 15 6 8.9390 4.5608 -2.9679 16 6 10.1183 5.2776 -3.5732 17 8 10.2347 4.9228 -4.9526 18 14 11.6732 4.7859 -2.6723 19 16 7.2626 4.7034 -3.4901 20 6 4.1076 2.7143 -0.0001 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8899 23 1 -0.3634 0.5137 -0.8900 24 1 4.6642 0.1531 -1.5589 25 1 3.5267 1.4119 -2.2075 26 1 4.0213 4.6383 -2.4681 27 1 4.7608 3.8809 -3.8991 28 1 3.5788 2.9755 -2.9237 29 1 9.9031 3.4401 -1.4464 30 1 9.9729 6.3544 -3.4861 31 1 10.3663 3.9771 -5.1056 32 1 11.8658 3.3160 -2.7566 33 1 12.8435 5.4866 -3.2595 34 1 3.4179 3.4400 -0.4310 35 1 4.5076 3.0309 0.9631 There are 49 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 49 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_12109656_15704118.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 03:49:44 Heat of formation + Delta-G solvation = -19.839875 kcal Electronic energy + Delta-G solvation = -20149.987688 eV Core-core repulsion = 16857.516698 eV Total energy + Delta-G solvation = -3292.470990 eV No. of doubly occupied orbitals = 49 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 285.087 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.01976 -40.88121 -39.85117 -38.03884 -37.52007 -36.07259 -31.79781 -29.57804 -28.49860 -27.38912 -26.84504 -25.53311 -24.51216 -22.45844 -20.86660 -20.16939 -19.64167 -18.78239 -18.00991 -17.77350 -17.47941 -17.21300 -16.62343 -16.26016 -15.98505 -15.92778 -15.55330 -14.91898 -14.55443 -14.40427 -14.30595 -13.87737 -13.73192 -13.52339 -13.15278 -12.98047 -12.89976 -12.45428 -12.35691 -12.22361 -11.94277 -11.85996 -11.83121 -11.40670 -10.97513 -10.66745 -10.53127 -10.15881 -8.63959 -4.89267 -0.09502 0.06088 0.72471 1.04522 1.45257 1.60721 1.65053 1.89350 1.90395 2.00292 3.19515 3.32602 3.37883 3.51790 3.63461 3.73870 3.87373 3.99017 4.11372 4.25346 4.27679 4.36352 4.40470 4.46645 4.51733 4.57626 4.66291 4.67726 4.70888 4.83099 4.90656 4.99684 5.22773 5.32635 5.63812 5.97221 6.44555 6.63698 6.87115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.362 6.362 3 C 0.471 3.529 4 O -0.537 6.537 5 C -0.102 4.102 6 H 0.153 0.847 7 C -0.127 4.127 8 C 0.142 3.858 9 H 0.129 0.871 10 N -0.569 5.569 11 C 0.080 3.920 12 C 0.308 3.692 13 N -0.570 5.570 14 C 0.091 3.909 15 C -0.308 4.308 16 C -0.041 4.041 17 O -0.550 6.550 18 Si 0.787 3.213 19 S 0.119 5.881 20 C -0.131 4.131 21 H 0.128 0.872 22 H 0.060 0.940 23 H 0.061 0.939 24 H 0.103 0.897 25 H 0.093 0.907 26 H 0.067 0.933 27 H 0.076 0.924 28 H 0.096 0.904 29 H 0.193 0.807 30 H 0.122 0.878 31 H 0.386 0.614 32 H -0.278 1.278 33 H -0.296 1.296 34 H 0.089 0.911 35 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.140 -2.532 1.538 3.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.278 6.278 3 C 0.316 3.684 4 O -0.427 6.427 5 C -0.121 4.121 6 H 0.171 0.829 7 C -0.166 4.166 8 C 0.036 3.964 9 H 0.146 0.854 10 N -0.286 5.286 11 C -0.062 4.062 12 C -0.061 4.061 13 N -0.296 5.296 14 C -0.060 4.060 15 C -0.431 4.431 16 C -0.152 4.152 17 O -0.358 6.358 18 Si 0.689 3.311 19 S 0.370 5.630 20 C -0.170 4.170 21 H 0.146 0.854 22 H 0.079 0.921 23 H 0.080 0.920 24 H 0.122 0.878 25 H 0.112 0.888 26 H 0.086 0.914 27 H 0.094 0.906 28 H 0.114 0.886 29 H 0.209 0.791 30 H 0.139 0.861 31 H 0.236 0.764 32 H -0.204 1.204 33 H -0.224 1.224 34 H 0.108 0.892 35 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -1.494 -1.828 1.030 2.576 hybrid contribution -0.033 -0.722 -0.541 0.903 sum -1.527 -2.550 0.489 3.012 Atomic orbital electron populations 1.23524 0.75065 1.05586 1.02441 1.86523 1.24718 1.33100 1.83460 1.23968 0.92453 0.81012 0.70984 1.90674 1.67868 1.37437 1.46703 1.22382 0.85962 1.01286 1.02496 0.82913 1.23500 0.97470 1.01027 0.94562 1.22647 0.98004 0.88461 0.87248 0.85366 1.46050 1.00832 1.46129 1.35587 1.22004 0.89539 1.00579 0.94099 1.23910 0.90498 0.96352 0.95353 1.66425 0.98065 1.32382 1.32699 1.21600 0.95897 0.93647 0.94886 1.26002 0.97825 1.11992 1.07324 1.24661 1.01984 1.02736 0.85775 1.86573 1.94326 1.31139 1.23737 0.93856 0.71647 0.78036 0.87524 1.84094 1.02151 1.43499 1.33236 1.23464 0.97366 0.94794 1.01372 0.85411 0.92109 0.91975 0.87804 0.88836 0.91435 0.90593 0.88563 0.79075 0.86058 0.76437 1.20361 1.22397 0.89246 0.89214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.06 10.56 113.37 1.20 1.14 16 2 O -0.36 -0.56 10.57 -51.44 -0.54 -1.11 16 3 C 0.47 1.18 7.49 71.23 0.53 1.71 16 4 O -0.54 -4.69 15.65 21.95 0.34 -4.34 16 5 C -0.10 0.36 4.26 -11.02 -0.05 0.31 16 6 H 0.15 -1.18 8.14 -2.38 -0.02 -1.20 16 7 C -0.13 0.61 7.14 31.21 0.22 0.83 16 8 C 0.14 -0.31 4.34 45.60 0.20 -0.12 16 9 H 0.13 -0.14 7.39 -2.39 -0.02 -0.15 16 10 N -0.57 -0.05 3.19 -708.19 -2.26 -2.31 16 11 C 0.08 -0.28 9.38 127.77 1.20 0.92 16 12 C 0.31 1.12 7.75 179.32 1.39 2.51 16 13 N -0.57 -2.97 9.68 -202.02 -1.96 -4.93 16 14 C 0.09 0.20 10.07 83.54 0.84 1.04 16 15 C -0.31 -0.60 5.93 24.57 0.15 -0.46 16 16 C -0.04 -0.01 3.08 71.24 0.22 0.21 16 17 O -0.55 -1.77 12.88 -148.98 -1.92 -3.69 16 18 Si 0.79 -1.95 30.49 68.60 2.09 0.14 16 19 S 0.12 0.31 21.74 -56.49 -1.23 -0.92 16 20 C -0.13 0.26 6.98 31.11 0.22 0.48 16 21 H 0.13 -0.94 8.14 -2.38 -0.02 -0.96 16 22 H 0.06 -0.07 8.13 -2.39 -0.02 -0.09 16 23 H 0.06 -0.10 8.13 -2.39 -0.02 -0.12 16 24 H 0.10 -0.70 8.14 -2.39 -0.02 -0.72 16 25 H 0.09 -0.43 5.94 -2.39 -0.01 -0.44 16 26 H 0.07 -0.25 8.14 -2.39 -0.02 -0.27 16 27 H 0.08 -0.32 7.17 -2.39 -0.02 -0.33 16 28 H 0.10 -0.54 5.78 -2.39 -0.01 -0.55 16 29 H 0.19 -0.52 5.85 -2.91 -0.02 -0.54 16 30 H 0.12 -0.11 7.96 -2.38 -0.02 -0.13 16 31 H 0.39 -0.86 8.70 -74.05 -0.64 -1.51 16 32 H -0.28 -0.31 7.11 99.48 0.71 0.39 16 33 H -0.30 -1.39 7.11 99.48 0.71 -0.68 16 34 H 0.09 0.08 6.76 -2.39 -0.02 0.07 16 35 H 0.09 -0.23 8.14 -2.39 -0.02 -0.25 16 Total: 0.00 -17.22 307.89 1.16 -16.05 By element: Atomic # 1 Polarization: -8.01 SS G_CDS: 0.52 Total: -7.49 kcal Atomic # 6 Polarization: 2.47 SS G_CDS: 6.11 Total: 8.59 kcal Atomic # 7 Polarization: -3.02 SS G_CDS: -4.22 Total: -7.24 kcal Atomic # 8 Polarization: -7.02 SS G_CDS: -2.12 Total: -9.14 kcal Atomic # 14 Polarization: -1.95 SS G_CDS: 2.09 Total: 0.14 kcal Atomic # 16 Polarization: 0.31 SS G_CDS: -1.23 Total: -0.92 kcal Total: -17.22 1.16 -16.05 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12109656_15704118.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.785 kcal (2) G-P(sol) polarization free energy of solvation -17.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds