Wall clock time and date at job start Mon Mar 8 2021 03:49:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34227 * 117.00519 * 2 1 4 4 O 1.20826 * 119.99619 * 359.97438 * 3 2 1 5 5 C 1.50692 * 120.00019 * 180.02562 * 3 2 1 6 6 H 1.09000 * 112.85477 * 48.80701 * 5 3 2 7 7 C 1.53789 * 113.61121 * 179.97438 * 5 3 2 8 8 C 1.53783 * 87.08048 * 140.06726 * 7 5 3 9 9 H 1.09003 * 113.61380 * 89.19836 * 8 7 5 10 10 N 1.46502 * 113.61673 * 220.02529 * 8 7 5 11 11 C 1.46492 * 120.00152 * 64.57808 * 10 8 7 12 12 C 1.38615 * 119.99356 * 244.58343 * 10 8 7 13 13 N 1.29691 * 124.94217 * 179.97438 * 12 10 8 14 14 C 1.32127 * 116.86133 * 180.02562 * 13 12 10 15 15 C 1.50692 * 122.70851 * 179.97438 * 14 13 12 16 16 O 1.42907 * 109.47468 * 294.96068 * 15 14 13 17 17 Si 1.86298 * 109.47238 * 54.96176 * 15 14 13 18 18 C 1.33325 * 114.57920 * 0.25627 * 14 13 12 19 19 C 1.50704 * 125.95002 * 179.75161 * 18 14 13 20 20 S 1.70966 * 124.95177 * 0.02562 * 12 10 8 21 21 C 1.53785 * 87.17192 * 334.60912 * 8 7 5 22 22 H 1.09001 * 109.47129 * 300.00173 * 1 2 3 23 23 H 1.08999 * 109.47220 * 59.99812 * 1 2 3 24 24 H 1.08996 * 109.47528 * 180.02562 * 1 2 3 25 25 H 1.09000 * 113.61166 * 25.52350 * 7 5 3 26 26 H 1.09000 * 113.69377 * 254.62499 * 7 5 3 27 27 H 1.09003 * 109.47291 * 275.48946 * 11 10 8 28 28 H 1.08999 * 109.47192 * 35.48876 * 11 10 8 29 29 H 1.09000 * 109.46774 * 155.48823 * 11 10 8 30 30 H 1.09000 * 109.47213 * 174.96221 * 15 14 13 31 31 H 0.96697 * 114.00193 * 179.97438 * 16 15 14 32 32 H 1.48498 * 110.00075 * 299.99931 * 17 15 14 33 33 H 1.48503 * 109.99913 * 61.31807 * 17 15 14 34 34 H 1.08998 * 109.46797 * 84.92692 * 19 18 14 35 35 H 1.08997 * 109.46739 * 204.91828 * 19 18 14 36 36 H 1.08992 * 109.47144 * 324.92470 * 19 18 14 37 37 H 1.09003 * 113.61163 * 139.93821 * 21 8 7 38 38 H 1.09000 * 113.61696 * 270.84001 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2746 -0.0006 6 1 4.0234 0.6363 -0.7567 7 6 4.1078 2.7141 -0.0011 8 6 5.1829 2.2263 0.9844 9 1 6.0824 1.8491 0.4978 10 7 5.4738 3.1821 2.0559 11 6 4.4381 3.5237 3.0340 12 6 6.7291 3.7633 2.1440 13 7 7.0897 4.6187 3.0497 14 6 8.3288 5.0726 2.9826 15 6 8.8852 6.0695 3.9661 16 8 8.1881 7.3099 3.8331 17 14 8.6704 5.4191 5.6985 18 6 9.0452 4.5817 1.9709 19 6 10.4772 4.9262 1.6518 20 16 8.0271 3.4580 1.0740 21 6 4.1956 1.1214 1.3961 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 3.4181 3.4401 0.4293 26 1 4.5094 3.0306 -0.9638 27 1 3.8054 4.3150 2.6319 28 1 3.8304 2.6431 3.2421 29 1 4.9079 3.8671 3.9556 30 1 9.9452 6.2252 3.7653 31 1 8.4943 7.9999 4.4374 32 1 7.2294 5.2026 5.9847 33 1 9.4170 4.1455 5.8591 34 1 11.1426 4.2978 2.2438 35 1 10.6642 4.7556 0.5916 36 1 10.6603 5.9741 1.8891 37 1 4.6679 0.1526 1.5592 38 1 3.5300 1.4112 2.2091 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_12109656_15704122.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 03:49:46 Heat of formation + Delta-G solvation = -24.558631 kcal Electronic energy + Delta-G solvation = -22222.406185 eV Core-core repulsion = 18774.192955 eV Total energy + Delta-G solvation = -3448.213229 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 299.102 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.09346 -41.17109 -40.13139 -37.76666 -37.46350 -36.15188 -33.24080 -29.67437 -29.49949 -28.51245 -27.08506 -26.69242 -25.71194 -23.88368 -22.07067 -20.60318 -19.88752 -19.72385 -18.80345 -18.39648 -18.00021 -17.54845 -17.37074 -16.51118 -16.40575 -15.92268 -15.71107 -15.43657 -14.94775 -14.60308 -14.39102 -14.30996 -14.08402 -14.00345 -13.67245 -13.64545 -13.43586 -13.12746 -13.00890 -12.91597 -12.67079 -12.38285 -12.23318 -11.96937 -11.89943 -11.82751 -11.49060 -10.94778 -10.71280 -10.39675 -10.09960 -8.64676 -5.05910 -0.18353 0.00059 0.58512 0.99235 1.21996 1.46574 1.57466 1.75975 1.83126 2.12759 3.02902 3.19798 3.29912 3.46090 3.57670 3.66829 3.85931 3.98794 4.06109 4.14721 4.21251 4.22354 4.24972 4.32563 4.38307 4.39729 4.53713 4.64422 4.65435 4.68831 4.72105 4.80948 4.82562 4.90623 5.03475 5.17851 5.27966 5.60042 5.83359 6.59157 6.79055 6.93030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.360 6.360 3 C 0.470 3.530 4 O -0.539 6.539 5 C -0.098 4.098 6 H 0.163 0.837 7 C -0.135 4.135 8 C 0.129 3.871 9 H 0.131 0.869 10 N -0.573 5.573 11 C 0.099 3.901 12 C 0.294 3.706 13 N -0.571 5.571 14 C 0.078 3.922 15 C -0.039 4.039 16 O -0.561 6.561 17 Si 0.797 3.203 18 C -0.254 4.254 19 C -0.072 4.072 20 S 0.137 5.863 21 C -0.124 4.124 22 H 0.059 0.941 23 H 0.060 0.940 24 H 0.130 0.870 25 H 0.082 0.918 26 H 0.098 0.902 27 H 0.049 0.951 28 H 0.091 0.909 29 H 0.061 0.939 30 H 0.109 0.891 31 H 0.404 0.596 32 H -0.312 1.312 33 H -0.300 1.300 34 H 0.087 0.913 35 H 0.079 0.921 36 H 0.091 0.909 37 H 0.117 0.883 38 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.118 -2.930 -0.497 5.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.276 6.276 3 C 0.315 3.685 4 O -0.429 6.429 5 C -0.118 4.118 6 H 0.181 0.819 7 C -0.174 4.174 8 C 0.025 3.975 9 H 0.149 0.851 10 N -0.292 5.292 11 C -0.045 4.045 12 C -0.075 4.075 13 N -0.297 5.297 14 C -0.051 4.051 15 C -0.151 4.151 16 O -0.370 6.370 17 Si 0.704 3.296 18 C -0.378 4.378 19 C -0.131 4.131 20 S 0.388 5.612 21 C -0.162 4.162 22 H 0.078 0.922 23 H 0.079 0.921 24 H 0.148 0.852 25 H 0.101 0.899 26 H 0.116 0.884 27 H 0.068 0.932 28 H 0.109 0.891 29 H 0.080 0.920 30 H 0.127 0.873 31 H 0.255 0.745 32 H -0.240 1.240 33 H -0.228 1.228 34 H 0.105 0.895 35 H 0.098 0.902 36 H 0.109 0.891 37 H 0.135 0.865 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 2.886 -4.168 -0.946 5.157 hybrid contribution -0.638 0.608 0.130 0.891 sum 2.248 -3.560 -0.816 4.289 Atomic orbital electron populations 1.23528 0.75052 1.05651 1.02382 1.86514 1.24701 1.32913 1.83437 1.23958 0.92504 0.81043 0.71026 1.90688 1.67924 1.37593 1.46654 1.22428 0.86090 1.00849 1.02400 0.81938 1.23506 0.97370 0.95200 1.01341 1.22827 0.98545 0.88887 0.87217 0.85110 1.45983 1.06760 1.44976 1.31432 1.21665 0.90142 1.01253 0.91451 1.23691 0.93009 0.95595 0.95233 1.66120 1.18273 1.17007 1.28335 1.19466 0.88183 1.00439 0.97026 1.24394 0.97950 0.86424 1.06323 1.86486 1.63292 1.21922 1.65350 0.95302 0.77020 0.81818 0.75432 1.25634 1.04465 1.06622 1.01047 1.20333 0.86379 1.03254 1.03092 1.83503 1.02255 1.44533 1.30906 1.23462 0.97116 1.00658 0.94946 0.92179 0.92085 0.85227 0.89906 0.88382 0.93221 0.89054 0.92022 0.87299 0.74493 1.24048 1.22817 0.89466 0.90181 0.89094 0.86479 0.88813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.04 10.56 113.37 1.20 1.16 16 2 O -0.36 -0.65 10.56 -51.39 -0.54 -1.19 16 3 C 0.47 1.51 7.49 71.23 0.53 2.05 16 4 O -0.54 -5.61 15.65 21.96 0.34 -5.27 16 5 C -0.10 0.36 4.26 -10.95 -0.05 0.32 16 6 H 0.16 -1.56 8.14 -2.39 -0.02 -1.58 16 7 C -0.13 0.12 7.06 31.12 0.22 0.34 16 8 C 0.13 -0.24 4.17 45.52 0.19 -0.05 16 9 H 0.13 -0.66 6.83 -2.39 -0.02 -0.67 16 10 N -0.57 -2.82 3.18 -708.62 -2.26 -5.07 16 11 C 0.10 0.50 9.99 127.77 1.28 1.78 16 12 C 0.29 2.70 7.74 179.32 1.39 4.09 16 13 N -0.57 -7.90 8.95 -189.86 -1.70 -9.59 16 14 C 0.08 0.78 5.19 41.40 0.21 1.00 16 15 C -0.04 -0.15 2.84 71.23 0.20 0.06 16 16 O -0.56 -2.57 12.86 -148.98 -1.92 -4.49 16 17 Si 0.80 2.75 32.65 68.60 2.24 4.99 16 18 C -0.25 -1.47 6.57 24.58 0.16 -1.31 16 19 C -0.07 0.11 9.72 71.24 0.69 0.81 16 20 S 0.14 0.54 21.58 -56.49 -1.22 -0.68 16 21 C -0.12 0.57 7.06 31.18 0.22 0.79 16 22 H 0.06 -0.03 8.13 -2.39 -0.02 -0.05 16 23 H 0.06 -0.03 8.13 -2.39 -0.02 -0.05 16 24 H 0.13 -0.91 8.14 -2.39 -0.02 -0.93 16 25 H 0.08 0.37 7.16 -2.39 -0.02 0.36 16 26 H 0.10 -0.29 8.14 -2.39 -0.02 -0.31 16 27 H 0.05 0.30 8.14 -2.39 -0.02 0.29 16 28 H 0.09 0.03 5.61 -2.39 -0.01 0.02 16 29 H 0.06 0.59 7.46 -2.39 -0.02 0.57 16 30 H 0.11 -0.33 6.30 -2.39 -0.02 -0.35 16 31 H 0.40 -2.94 8.74 -74.06 -0.65 -3.58 16 32 H -0.31 -4.44 7.11 99.48 0.71 -3.74 16 33 H -0.30 -2.70 7.11 99.48 0.71 -2.00 16 34 H 0.09 -0.35 8.14 -2.39 -0.02 -0.37 16 35 H 0.08 -0.27 8.14 -2.39 -0.02 -0.29 16 36 H 0.09 -0.32 7.15 -2.39 -0.02 -0.34 16 37 H 0.12 -0.99 8.14 -2.39 -0.02 -1.01 16 38 H 0.09 -0.27 5.65 -2.39 -0.01 -0.28 16 Total: 0.00 -26.29 330.49 1.68 -24.60 By element: Atomic # 1 Polarization: -14.80 SS G_CDS: 0.48 Total: -14.32 kcal Atomic # 6 Polarization: 4.78 SS G_CDS: 6.25 Total: 11.03 kcal Atomic # 7 Polarization: -10.72 SS G_CDS: -3.95 Total: -14.67 kcal Atomic # 8 Polarization: -8.83 SS G_CDS: -2.11 Total: -10.95 kcal Atomic # 14 Polarization: 2.75 SS G_CDS: 2.24 Total: 4.99 kcal Atomic # 16 Polarization: 0.54 SS G_CDS: -1.22 Total: -0.68 kcal Total: -26.29 1.68 -24.60 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12109656_15704122.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.042 kcal (2) G-P(sol) polarization free energy of solvation -26.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds