Wall clock time and date at job start Mon Mar 8 2021 03:49:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34233 * 116.99762 * 2 1 4 4 O 1.20819 * 120.00059 * 359.97438 * 3 2 1 5 5 C 1.50704 * 119.99753 * 179.97438 * 3 2 1 6 6 H 1.08993 * 112.85400 * 311.19561 * 5 3 2 7 7 C 1.53778 * 113.68748 * 82.46697 * 5 3 2 8 8 C 1.53782 * 87.08238 * 139.99088 * 7 5 3 9 9 H 1.08995 * 113.69204 * 89.12306 * 8 7 5 10 10 N 1.46903 * 113.61528 * 220.02154 * 8 7 5 11 11 C 1.46903 * 110.99522 * 291.61949 * 10 8 7 12 12 C 1.39143 * 111.00248 * 167.67028 * 10 8 7 13 13 N 1.32339 * 119.71403 * 359.97438 * 12 10 8 14 14 C 1.32014 * 121.64231 * 179.97438 * 13 12 10 15 15 C 1.37979 * 120.90210 * 359.97438 * 14 13 12 16 16 C 1.50703 * 120.32656 * 180.02562 * 15 14 13 17 17 O 1.42907 * 109.46764 * 244.97856 * 16 15 14 18 18 Si 1.86297 * 109.46945 * 4.97780 * 16 15 14 19 19 C 1.38906 * 119.34676 * 0.02562 * 15 14 13 20 20 C 1.38437 * 118.48547 * 0.24970 * 19 15 14 21 21 F 1.35105 * 120.47297 * 179.75087 * 20 19 15 22 22 C 1.53777 * 113.61140 * 179.97438 * 5 3 2 23 23 H 1.08992 * 109.47027 * 300.00213 * 1 2 3 24 24 H 1.08998 * 109.47170 * 60.00303 * 1 2 3 25 25 H 1.09006 * 109.46613 * 180.02562 * 1 2 3 26 26 H 1.09001 * 113.61770 * 25.44111 * 7 5 3 27 27 H 1.09002 * 113.61849 * 254.53657 * 7 5 3 28 28 H 1.08995 * 109.47527 * 289.62307 * 11 10 8 29 29 H 1.08999 * 109.47391 * 49.62750 * 11 10 8 30 30 H 1.09001 * 109.47279 * 169.62525 * 11 10 8 31 31 H 1.08003 * 119.54496 * 179.97438 * 14 13 12 32 32 H 1.08999 * 109.47070 * 124.97896 * 16 15 14 33 33 H 0.96698 * 113.99225 * 179.97438 * 17 16 15 34 34 H 1.48507 * 109.99752 * 178.67947 * 18 16 15 35 35 H 1.48491 * 110.00187 * 299.99914 * 18 16 15 36 36 H 1.08004 * 120.75701 * 179.97438 * 19 15 14 37 37 H 1.09008 * 113.61602 * 105.39017 * 22 5 3 38 38 H 1.08998 * 113.61965 * 334.48683 * 22 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 4.0234 0.6366 0.7566 7 6 4.1935 1.1226 -1.3952 8 6 5.1827 2.2262 -0.9849 9 1 6.0822 1.8493 -0.4982 10 7 5.4744 3.1844 -2.0596 11 6 6.2407 2.5474 -3.1390 12 6 6.1426 4.3002 -1.5651 13 7 6.4246 4.3773 -0.2744 14 6 7.0574 5.4178 0.2353 15 6 7.4508 6.4701 -0.5659 16 6 8.1729 7.6512 0.0296 17 8 7.3598 8.8196 -0.0965 18 14 8.5164 7.3251 1.8313 19 6 7.1747 6.4300 -1.9266 20 6 6.5048 5.3290 -2.4322 21 9 6.2113 5.2507 -3.7487 22 6 4.1077 2.7143 -0.0001 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0278 0.0005 26 1 3.5272 1.4134 -2.2074 27 1 4.6642 0.1532 -1.5590 28 1 7.2516 2.3357 -2.7909 29 1 5.7541 1.6164 -3.4296 30 1 6.2849 3.2176 -3.9975 31 1 7.2699 5.4457 1.2938 32 1 9.1143 7.8051 -0.4978 33 1 7.7625 9.6201 0.2669 34 1 9.2564 8.4690 2.4224 35 1 7.2408 7.1137 2.5615 36 1 7.4719 7.2413 -2.5746 37 1 4.5091 3.0303 0.9628 38 1 3.4180 3.4400 -0.4310 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_12109656_17656566.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 03:49:49 Heat of formation + Delta-G solvation = -66.913482 kcal Electronic energy + Delta-G solvation = -24351.220841 eV Core-core repulsion = 20498.102365 eV Total energy + Delta-G solvation = -3853.118477 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 297.121 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -50.08416 -42.16414 -41.51763 -39.90950 -38.09270 -37.52960 -36.43924 -33.58122 -31.88314 -29.51237 -28.20923 -27.27768 -26.46456 -25.28939 -24.89269 -22.92059 -21.86847 -20.50512 -19.23892 -18.83973 -18.59513 -18.30947 -18.09696 -17.62884 -17.36851 -17.03850 -16.55419 -16.16252 -15.82373 -15.75127 -15.30043 -15.07381 -14.51354 -14.41029 -14.35369 -14.24037 -14.01884 -13.82685 -13.55058 -13.26294 -12.96245 -12.76313 -12.60960 -12.44387 -12.18187 -12.02567 -11.86276 -11.52436 -11.38053 -11.15079 -10.82474 -10.67869 -10.48588 -9.20215 -4.93209 -0.28969 -0.06798 1.06600 1.25429 1.60494 1.68247 1.95702 2.23072 2.37693 3.01658 3.10587 3.27463 3.31486 3.42236 3.52452 3.62315 3.75542 3.83820 3.98714 4.05581 4.23790 4.25963 4.26629 4.29082 4.35950 4.45028 4.52302 4.64012 4.66482 4.70833 4.71974 4.85609 4.90013 4.91498 4.99501 5.14630 5.22057 5.32602 5.62973 5.91015 6.56383 6.65218 6.66311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.360 6.360 3 C 0.469 3.531 4 O -0.544 6.544 5 C -0.105 4.105 6 H 0.158 0.842 7 C -0.102 4.102 8 C 0.075 3.925 9 H 0.107 0.893 10 N -0.480 5.480 11 C 0.016 3.984 12 C 0.286 3.714 13 N -0.492 5.492 14 C 0.120 3.880 15 C -0.131 4.131 16 C -0.077 4.077 17 O -0.559 6.559 18 Si 0.765 3.235 19 C -0.062 4.062 20 C 0.015 3.985 21 F -0.130 7.130 22 C -0.100 4.100 23 H 0.059 0.941 24 H 0.058 0.942 25 H 0.131 0.869 26 H 0.083 0.917 27 H 0.115 0.885 28 H 0.051 0.949 29 H 0.103 0.897 30 H 0.080 0.920 31 H 0.182 0.818 32 H 0.106 0.894 33 H 0.399 0.601 34 H -0.281 1.281 35 H -0.294 1.294 36 H 0.161 0.839 37 H 0.086 0.914 38 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.589 -3.769 0.997 7.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.276 6.276 3 C 0.314 3.686 4 O -0.434 6.434 5 C -0.124 4.124 6 H 0.175 0.825 7 C -0.140 4.140 8 C -0.032 4.032 9 H 0.125 0.875 10 N -0.197 5.197 11 C -0.129 4.129 12 C 0.053 3.947 13 N -0.206 5.206 14 C -0.037 4.037 15 C -0.135 4.135 16 C -0.186 4.186 17 O -0.370 6.370 18 Si 0.669 3.331 19 C -0.088 4.088 20 C -0.009 4.009 21 F -0.109 7.109 22 C -0.138 4.138 23 H 0.078 0.922 24 H 0.077 0.923 25 H 0.149 0.851 26 H 0.101 0.899 27 H 0.133 0.867 28 H 0.069 0.931 29 H 0.122 0.878 30 H 0.098 0.902 31 H 0.199 0.801 32 H 0.124 0.876 33 H 0.250 0.750 34 H -0.207 1.207 35 H -0.222 1.222 36 H 0.179 0.821 37 H 0.105 0.895 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 5.099 -4.267 1.769 6.880 hybrid contribution -0.168 2.153 -0.837 2.316 sum 4.931 -2.113 0.931 5.445 Atomic orbital electron populations 1.23516 0.75242 1.05635 1.02238 1.86519 1.24588 1.32936 1.83517 1.24133 0.92733 0.80938 0.70783 1.90672 1.68037 1.37781 1.46882 1.22544 0.85591 1.01318 1.02961 0.82457 1.23014 0.96880 1.00094 0.93965 1.23056 0.97751 0.91698 0.90652 0.87522 1.59392 1.41075 1.06970 1.12290 1.22701 0.96383 1.01004 0.92816 1.20131 0.92151 0.93333 0.89131 1.67748 1.14653 1.26712 1.11447 1.22803 0.91960 0.88272 1.00646 1.20228 1.02802 0.97324 0.93103 1.24864 0.95715 0.84815 1.13160 1.86553 1.47550 1.19306 1.83599 0.94223 0.80570 0.86856 0.71414 1.21582 0.94801 0.96147 0.96314 1.18263 1.05985 0.97608 0.79048 1.91463 1.91814 1.96104 1.31535 1.22830 0.96357 0.94009 1.00607 0.92246 0.92349 0.85066 0.89877 0.86658 0.93067 0.87812 0.90159 0.80141 0.87600 0.75023 1.20727 1.22180 0.82145 0.89542 0.91593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.02 10.56 113.37 1.20 1.22 16 2 O -0.36 -1.57 10.57 -51.45 -0.54 -2.11 16 3 C 0.47 3.17 7.49 71.24 0.53 3.70 16 4 O -0.54 -7.91 15.65 21.98 0.34 -7.56 16 5 C -0.10 0.01 4.26 -11.01 -0.05 -0.04 16 6 H 0.16 -0.92 8.14 -2.39 -0.02 -0.94 16 7 C -0.10 0.26 6.48 31.12 0.20 0.46 16 8 C 0.08 -0.01 2.49 45.43 0.11 0.11 16 9 H 0.11 -0.27 8.06 -2.39 -0.02 -0.29 16 10 N -0.48 -1.62 4.69 -699.46 -3.28 -4.90 16 11 C 0.02 -0.02 9.11 127.69 1.16 1.14 16 12 C 0.29 1.57 6.18 133.08 0.82 2.39 16 13 N -0.49 -2.07 8.06 -193.03 -1.55 -3.63 16 14 C 0.12 0.15 9.83 84.60 0.83 0.99 16 15 C -0.13 -0.12 5.39 -19.76 -0.11 -0.22 16 16 C -0.08 0.26 2.81 71.24 0.20 0.46 16 17 O -0.56 -0.06 12.82 -148.98 -1.91 -1.97 16 18 Si 0.76 -3.70 29.87 68.60 2.05 -1.65 16 19 C -0.06 -0.17 9.82 22.48 0.22 0.05 16 20 C 0.02 0.09 7.01 22.58 0.16 0.25 16 21 F -0.13 -0.94 14.88 44.97 0.67 -0.27 16 22 C -0.10 -0.38 6.04 31.11 0.19 -0.19 16 23 H 0.06 0.10 8.13 -2.39 -0.02 0.08 16 24 H 0.06 0.11 8.13 -2.39 -0.02 0.09 16 25 H 0.13 -0.72 8.14 -2.38 -0.02 -0.74 16 26 H 0.08 0.06 8.10 -2.39 -0.02 0.04 16 27 H 0.12 -0.91 8.14 -2.39 -0.02 -0.93 16 28 H 0.05 -0.13 8.10 -2.39 -0.02 -0.15 16 29 H 0.10 -0.51 7.32 -2.39 -0.02 -0.52 16 30 H 0.08 0.06 5.97 -2.39 -0.01 0.05 16 31 H 0.18 -0.61 4.87 -2.91 -0.01 -0.62 16 32 H 0.11 -0.87 7.96 -2.39 -0.02 -0.89 16 33 H 0.40 -3.21 8.74 -74.06 -0.65 -3.86 16 34 H -0.28 0.20 7.11 99.48 0.71 0.90 16 35 H -0.29 -0.76 7.05 99.48 0.70 -0.06 16 36 H 0.16 -0.01 8.06 -2.91 -0.02 -0.03 16 37 H 0.09 0.29 8.01 -2.38 -0.02 0.27 16 38 H 0.07 0.72 7.44 -2.39 -0.02 0.71 16 Total: 0.00 -20.43 321.49 1.73 -18.69 By element: Atomic # 1 Polarization: -7.38 SS G_CDS: 0.48 Total: -6.90 kcal Atomic # 6 Polarization: 4.83 SS G_CDS: 5.48 Total: 10.31 kcal Atomic # 7 Polarization: -3.70 SS G_CDS: -4.83 Total: -8.53 kcal Atomic # 8 Polarization: -9.54 SS G_CDS: -2.11 Total: -11.65 kcal Atomic # 9 Polarization: -0.94 SS G_CDS: 0.67 Total: -0.27 kcal Atomic # 14 Polarization: -3.70 SS G_CDS: 2.05 Total: -1.65 kcal Total: -20.43 1.73 -18.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12109656_17656566.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.220 kcal (2) G-P(sol) polarization free energy of solvation -20.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds