Wall clock time and date at job start Mon Mar 8 2021 04:55:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52992 * 109.47223 * 2 1 4 4 C 1.53003 * 109.47189 * 239.99816 * 2 1 3 5 5 O 1.42897 * 109.47015 * 119.99841 * 2 1 3 6 6 C 1.42902 * 114.00229 * 59.99829 * 5 2 1 7 7 H 1.09001 * 112.84741 * 341.20133 * 6 5 2 8 8 C 1.53782 * 113.68887 * 112.46304 * 6 5 2 9 9 C 1.53962 * 87.11063 * 89.20074 * 8 6 5 10 10 H 1.08993 * 113.61598 * 270.84305 * 9 8 6 11 11 N 1.46501 * 113.66387 * 139.88885 * 9 8 6 12 12 C 1.38408 * 119.99918 * 107.55408 * 11 9 8 13 13 N 1.32491 * 119.21239 * 359.73089 * 12 11 9 14 14 C 1.32279 * 120.73473 * 179.71956 * 13 12 11 15 15 C 1.38612 * 119.19630 * 0.54105 * 14 13 12 16 16 C 1.50702 * 120.71901 * 179.75603 * 15 14 13 17 17 O 1.42908 * 109.46748 * 244.97826 * 16 15 14 18 18 Si 1.86302 * 109.47291 * 4.97431 * 16 15 14 19 19 C 1.38596 * 118.56004 * 359.73033 * 15 14 13 20 20 N 1.32281 * 119.19741 * 0.02562 * 19 15 14 21 21 C 1.53781 * 113.61735 * 210.00071 * 6 5 2 22 22 H 1.08992 * 109.47144 * 300.00296 * 1 2 3 23 23 H 1.09002 * 109.46704 * 60.00376 * 1 2 3 24 24 H 1.08997 * 109.47010 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47412 * 179.97438 * 3 2 1 26 26 H 1.09001 * 109.47353 * 299.99837 * 3 2 1 27 27 H 1.09001 * 109.47483 * 59.99787 * 3 2 1 28 28 H 1.09004 * 109.46902 * 300.00114 * 4 2 1 29 29 H 1.08997 * 109.46833 * 59.99915 * 4 2 1 30 30 H 1.08997 * 109.47011 * 180.02562 * 4 2 1 31 31 H 1.08997 * 113.61668 * 203.67624 * 8 6 5 32 32 H 1.08998 * 113.61674 * 334.50134 * 8 6 5 33 33 H 0.97002 * 119.99797 * 287.54884 * 11 9 8 34 34 H 1.08001 * 120.40371 * 180.24765 * 14 13 12 35 35 H 1.08994 * 109.47498 * 124.97397 * 16 15 14 36 36 H 0.96697 * 114.00241 * 59.99698 * 17 16 15 37 37 H 1.48501 * 109.99895 * 58.68059 * 18 16 15 38 38 H 1.48497 * 110.00148 * 180.02562 * 18 16 15 39 39 H 1.08001 * 120.40295 * 179.97438 * 19 15 14 40 40 H 1.09002 * 113.61445 * 25.35043 * 21 6 5 41 41 H 1.09002 * 113.61408 * 156.16774 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0401 -0.7213 -1.2492 5 8 2.0063 -0.6736 1.1668 6 6 1.5847 -2.0355 1.2646 7 1 0.7236 -2.2582 0.6345 8 6 2.7319 -3.0494 1.1207 9 6 2.9134 -2.9427 2.6459 10 1 3.6003 -2.1529 2.9497 11 7 3.1957 -4.2250 3.2956 12 6 4.4653 -4.4918 3.7778 13 7 5.4150 -3.5785 3.6388 14 6 6.6374 -3.7996 4.0933 15 6 6.9210 -5.0079 4.7106 16 6 8.3033 -5.2981 5.2361 17 8 8.8750 -6.3812 4.4998 18 14 9.3715 -3.7840 5.0435 19 6 5.9056 -5.9431 4.8344 20 7 4.7035 -5.6568 4.3623 21 6 1.4332 -2.5310 2.7125 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 -1.0276 0.0005 25 1 3.1301 1.4424 0.0005 26 1 1.6768 1.9563 -0.8900 27 1 1.6767 1.9563 0.8900 28 1 1.6767 -1.7490 -1.2492 29 1 1.6767 -0.2075 -2.1392 30 1 3.1300 -0.7217 -1.2490 31 1 2.4048 -4.0348 0.7892 32 1 3.5802 -2.6709 0.5504 33 1 2.4928 -4.8871 3.3878 34 1 7.4064 -3.0497 3.9806 35 1 8.2420 -5.5678 6.2904 36 1 8.9601 -6.2108 3.5517 37 1 8.7709 -2.6419 5.7785 38 1 10.7376 -4.0574 5.5576 39 1 6.0937 -6.8944 5.3098 40 1 1.2335 -1.7336 3.4283 41 1 0.7498 -3.3739 2.8162 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_12113342_12175864.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:55:54 Heat of formation + Delta-G solvation = 9.468980 kcal Electronic energy + Delta-G solvation = -22043.273696 eV Core-core repulsion = 18733.328571 eV Total energy + Delta-G solvation = -3309.945125 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.05435 -40.96712 -38.70949 -37.89355 -35.47028 -34.62860 -33.58566 -31.86979 -28.52428 -28.42981 -26.92498 -26.66918 -25.91450 -24.68566 -23.01059 -21.73381 -20.21929 -19.27962 -18.78540 -18.05299 -17.56882 -16.70609 -16.57683 -16.20883 -16.07589 -15.78917 -15.75919 -15.47202 -14.85051 -14.51133 -14.41076 -14.21541 -14.02953 -13.59837 -13.47677 -13.19048 -13.13359 -12.92570 -12.75451 -12.70593 -12.59199 -12.18749 -12.01985 -11.81520 -11.75787 -11.71825 -11.23804 -11.01484 -10.54902 -10.45008 -9.95864 -9.03617 -5.08505 0.11746 0.21705 1.25210 1.59317 1.88899 1.94953 2.51293 2.86860 3.19492 3.43744 3.48693 3.56474 3.65592 3.75396 3.79221 3.83227 3.85421 3.93829 4.00879 4.10372 4.21669 4.25278 4.52717 4.53240 4.59349 4.60815 4.72685 4.73561 4.77199 4.79090 4.85078 4.87034 5.00173 5.03152 5.06466 5.12816 5.26635 5.30568 5.38457 5.85056 6.07153 6.34058 6.47286 6.53879 7.35567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.107 3.893 3 C -0.139 4.139 4 C -0.177 4.177 5 O -0.352 6.352 6 C 0.067 3.933 7 H 0.084 0.916 8 C -0.171 4.171 9 C 0.146 3.854 10 H 0.125 0.875 11 N -0.685 5.685 12 C 0.568 3.432 13 N -0.560 5.560 14 C 0.200 3.800 15 C -0.296 4.296 16 C -0.045 4.045 17 O -0.541 6.541 18 Si 0.679 3.321 19 C 0.223 3.777 20 N -0.571 5.571 21 C -0.150 4.150 22 H 0.065 0.935 23 H 0.068 0.932 24 H 0.060 0.940 25 H 0.065 0.935 26 H 0.071 0.929 27 H 0.064 0.936 28 H 0.059 0.941 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.089 0.911 32 H 0.080 0.920 33 H 0.414 0.586 34 H 0.166 0.834 35 H 0.115 0.885 36 H 0.379 0.621 37 H -0.255 1.255 38 H -0.251 1.251 39 H 0.169 0.831 40 H 0.084 0.916 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.236 1.425 -3.576 4.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.068 3.932 3 C -0.196 4.196 4 C -0.234 4.234 5 O -0.271 6.271 6 C 0.008 3.992 7 H 0.101 0.899 8 C -0.211 4.211 9 C 0.041 3.959 10 H 0.143 0.857 11 N -0.320 5.320 12 C 0.212 3.788 13 N -0.282 5.282 14 C 0.032 3.968 15 C -0.304 4.304 16 C -0.158 4.158 17 O -0.346 6.346 18 Si 0.581 3.419 19 C 0.054 3.946 20 N -0.292 5.292 21 C -0.188 4.188 22 H 0.084 0.916 23 H 0.087 0.913 24 H 0.079 0.921 25 H 0.084 0.916 26 H 0.090 0.910 27 H 0.083 0.917 28 H 0.078 0.922 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.108 0.892 32 H 0.099 0.901 33 H 0.251 0.749 34 H 0.183 0.817 35 H 0.132 0.868 36 H 0.226 0.774 37 H -0.180 1.180 38 H -0.175 1.175 39 H 0.186 0.814 40 H 0.103 0.897 41 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -1.611 2.245 -2.890 3.999 hybrid contribution -0.044 -0.980 0.521 1.111 sum -1.655 1.265 -2.369 3.154 Atomic orbital electron populations 1.22476 0.95584 1.02532 1.03117 1.21565 0.93140 0.93209 0.85286 1.21772 1.02139 0.93065 1.02667 1.22476 1.02366 1.00812 0.97786 1.87984 1.73803 1.22341 1.42999 1.22715 0.96774 0.82708 0.97003 0.89858 1.24081 0.99925 0.99591 0.97478 1.22586 0.96577 0.85160 0.91576 0.85748 1.44285 1.06927 1.19188 1.61627 1.19448 0.87271 0.85181 0.86946 1.67916 1.01462 1.33455 1.25337 1.22768 0.92513 0.93810 0.87662 1.21697 0.99747 0.98605 1.10398 1.24692 0.92892 1.00380 0.97817 1.86509 1.83428 1.40493 1.24170 0.94997 0.79454 0.76192 0.91273 1.22825 0.85503 0.97783 0.88442 1.68002 1.24091 1.19924 1.17221 1.23663 0.96432 1.01519 0.97214 0.91579 0.91316 0.92149 0.91634 0.90982 0.91716 0.92231 0.91492 0.91597 0.89229 0.90147 0.74878 0.81733 0.86752 0.77386 1.17968 1.17523 0.81353 0.89685 0.88593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 0.20 8.38 37.16 0.31 0.51 16 2 C 0.11 -0.03 1.11 -90.62 -0.10 -0.13 16 3 C -0.14 0.09 8.84 37.15 0.33 0.42 16 4 C -0.18 0.17 8.38 37.16 0.31 0.48 16 5 O -0.35 -0.40 9.92 -35.23 -0.35 -0.75 16 6 C 0.07 -0.04 2.88 -25.92 -0.07 -0.11 16 7 H 0.08 -0.12 5.54 -51.93 -0.29 -0.41 16 8 C -0.17 0.06 7.72 -25.82 -0.20 -0.14 16 9 C 0.15 0.06 4.20 -67.02 -0.28 -0.22 16 10 H 0.12 0.29 7.37 -51.93 -0.38 -0.09 16 11 N -0.69 -0.72 5.51 -54.91 -0.30 -1.02 16 12 C 0.57 1.77 8.42 -322.81 -2.72 -0.95 16 13 N -0.56 -1.63 9.13 -13.93 -0.13 -1.76 16 14 C 0.20 0.16 9.92 -17.22 -0.17 -0.01 16 15 C -0.30 -0.11 5.36 -104.35 -0.56 -0.67 16 16 C -0.05 0.04 2.83 36.01 0.10 0.14 16 17 O -0.54 0.21 12.85 -35.23 -0.45 -0.24 16 18 Si 0.68 -1.04 29.88 -169.99 -5.08 -6.12 16 19 C 0.22 0.34 10.99 -17.23 -0.19 0.15 16 20 N -0.57 -1.86 10.46 -13.93 -0.15 -2.00 16 21 C -0.15 0.14 7.66 -25.92 -0.20 -0.06 16 22 H 0.07 -0.04 8.14 -51.93 -0.42 -0.46 16 23 H 0.07 -0.12 8.14 -51.93 -0.42 -0.54 16 24 H 0.06 -0.09 6.24 -51.93 -0.32 -0.41 16 25 H 0.06 -0.02 8.14 -51.93 -0.42 -0.44 16 26 H 0.07 -0.13 8.14 -51.93 -0.42 -0.55 16 27 H 0.06 -0.02 8.14 -51.93 -0.42 -0.44 16 28 H 0.06 -0.07 7.02 -51.93 -0.36 -0.43 16 29 H 0.07 -0.11 8.14 -51.93 -0.42 -0.53 16 30 H 0.06 -0.03 8.14 -51.93 -0.42 -0.45 16 31 H 0.09 -0.09 8.14 -51.93 -0.42 -0.51 16 32 H 0.08 0.06 8.14 -51.93 -0.42 -0.36 16 33 H 0.41 -0.12 8.84 -40.82 -0.36 -0.48 16 34 H 0.17 -0.31 5.07 -52.49 -0.27 -0.57 16 35 H 0.12 -0.08 7.96 -51.93 -0.41 -0.49 16 36 H 0.38 -1.51 8.70 45.56 0.40 -1.12 16 37 H -0.25 -0.23 7.11 56.52 0.40 0.17 16 38 H -0.25 -0.43 7.11 56.52 0.40 -0.03 16 39 H 0.17 -0.05 8.06 -52.49 -0.42 -0.47 16 40 H 0.08 -0.02 8.14 -51.93 -0.42 -0.44 16 41 H 0.10 -0.23 8.12 -51.93 -0.42 -0.66 16 LS Contribution 333.01 15.07 5.02 5.02 Total: 0.00 -6.05 333.01 -11.15 -17.20 By element: Atomic # 1 Polarization: -3.47 SS G_CDS: -6.27 Total: -9.74 kcal Atomic # 6 Polarization: 2.85 SS G_CDS: -3.44 Total: -0.59 kcal Atomic # 7 Polarization: -4.21 SS G_CDS: -0.58 Total: -4.78 kcal Atomic # 8 Polarization: -0.19 SS G_CDS: -0.80 Total: -0.99 kcal Atomic # 14 Polarization: -1.04 SS G_CDS: -5.08 Total: -6.12 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -6.05 -11.15 -17.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12113342_12175864.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.673 kcal (2) G-P(sol) polarization free energy of solvation -6.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.204 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds