Wall clock time and date at job start Mon Mar 8 2021 04:55:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52992 * 109.47223 * 2 1 4 4 C 1.53003 * 109.47189 * 239.99816 * 2 1 3 5 5 O 1.42897 * 109.47015 * 119.99841 * 2 1 3 6 6 C 1.42902 * 114.00229 * 59.99829 * 5 2 1 7 7 H 1.09001 * 112.84741 * 341.20133 * 6 5 2 8 8 C 1.53782 * 113.68887 * 112.46304 * 6 5 2 9 9 C 1.53962 * 87.11063 * 89.20074 * 8 6 5 10 10 H 1.08993 * 113.61598 * 270.84305 * 9 8 6 11 11 N 1.46501 * 113.66387 * 139.88885 * 9 8 6 12 12 C 1.38408 * 119.99918 * 107.55408 * 11 9 8 13 13 N 1.32491 * 119.21239 * 359.73089 * 12 11 9 14 14 C 1.32279 * 120.73473 * 179.71956 * 13 12 11 15 15 C 1.38612 * 119.19630 * 0.54105 * 14 13 12 16 16 C 1.50702 * 120.71901 * 179.75603 * 15 14 13 17 17 O 1.42908 * 109.46748 * 244.97826 * 16 15 14 18 18 Si 1.86302 * 109.47291 * 4.97431 * 16 15 14 19 19 C 1.38596 * 118.56004 * 359.73033 * 15 14 13 20 20 N 1.32281 * 119.19741 * 0.02562 * 19 15 14 21 21 C 1.53781 * 113.61735 * 210.00071 * 6 5 2 22 22 H 1.08992 * 109.47144 * 300.00296 * 1 2 3 23 23 H 1.09002 * 109.46704 * 60.00376 * 1 2 3 24 24 H 1.08997 * 109.47010 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47412 * 179.97438 * 3 2 1 26 26 H 1.09001 * 109.47353 * 299.99837 * 3 2 1 27 27 H 1.09001 * 109.47483 * 59.99787 * 3 2 1 28 28 H 1.09004 * 109.46902 * 300.00114 * 4 2 1 29 29 H 1.08997 * 109.46833 * 59.99915 * 4 2 1 30 30 H 1.08997 * 109.47011 * 180.02562 * 4 2 1 31 31 H 1.08997 * 113.61668 * 203.67624 * 8 6 5 32 32 H 1.08998 * 113.61674 * 334.50134 * 8 6 5 33 33 H 0.97002 * 119.99797 * 287.54884 * 11 9 8 34 34 H 1.08001 * 120.40371 * 180.24765 * 14 13 12 35 35 H 1.08994 * 109.47498 * 124.97397 * 16 15 14 36 36 H 0.96697 * 114.00241 * 59.99698 * 17 16 15 37 37 H 1.48501 * 109.99895 * 58.68059 * 18 16 15 38 38 H 1.48497 * 110.00148 * 180.02562 * 18 16 15 39 39 H 1.08001 * 120.40295 * 179.97438 * 19 15 14 40 40 H 1.09002 * 113.61445 * 25.35043 * 21 6 5 41 41 H 1.09002 * 113.61408 * 156.16774 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0401 -0.7213 -1.2492 5 8 2.0063 -0.6736 1.1668 6 6 1.5847 -2.0355 1.2646 7 1 0.7236 -2.2582 0.6345 8 6 2.7319 -3.0494 1.1207 9 6 2.9134 -2.9427 2.6459 10 1 3.6003 -2.1529 2.9497 11 7 3.1957 -4.2250 3.2956 12 6 4.4653 -4.4918 3.7778 13 7 5.4150 -3.5785 3.6388 14 6 6.6374 -3.7996 4.0933 15 6 6.9210 -5.0079 4.7106 16 6 8.3033 -5.2981 5.2361 17 8 8.8750 -6.3812 4.4998 18 14 9.3715 -3.7840 5.0435 19 6 5.9056 -5.9431 4.8344 20 7 4.7035 -5.6568 4.3623 21 6 1.4332 -2.5310 2.7125 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 -1.0276 0.0005 25 1 3.1301 1.4424 0.0005 26 1 1.6768 1.9563 -0.8900 27 1 1.6767 1.9563 0.8900 28 1 1.6767 -1.7490 -1.2492 29 1 1.6767 -0.2075 -2.1392 30 1 3.1300 -0.7217 -1.2490 31 1 2.4048 -4.0348 0.7892 32 1 3.5802 -2.6709 0.5504 33 1 2.4928 -4.8871 3.3878 34 1 7.4064 -3.0497 3.9806 35 1 8.2420 -5.5678 6.2904 36 1 8.9601 -6.2108 3.5517 37 1 8.7709 -2.6419 5.7785 38 1 10.7376 -4.0574 5.5576 39 1 6.0937 -6.8944 5.3098 40 1 1.2335 -1.7336 3.4283 41 1 0.7498 -3.3739 2.8162 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_12113342_12175864.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:55:54 Heat of formation + Delta-G solvation = 13.443890 kcal Electronic energy + Delta-G solvation = -22043.101331 eV Core-core repulsion = 18733.328571 eV Total energy + Delta-G solvation = -3309.772760 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 280.157 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.14098 -40.95203 -38.69987 -37.86457 -35.48964 -34.74384 -33.57816 -31.91506 -28.45607 -28.33904 -26.94872 -26.63380 -25.98248 -24.70217 -23.07200 -21.70721 -20.20771 -19.33041 -18.83483 -18.03480 -17.55839 -16.69943 -16.61160 -16.19889 -16.09619 -15.82286 -15.74985 -15.48695 -14.83174 -14.54319 -14.36739 -14.20991 -14.08001 -13.54680 -13.43675 -13.17023 -13.06542 -12.84330 -12.70808 -12.64231 -12.56678 -12.26325 -11.98582 -11.92401 -11.78333 -11.74804 -11.24004 -10.99639 -10.54810 -10.42605 -10.05294 -9.10039 -5.00022 0.03149 0.12165 1.31627 1.64060 1.83848 1.97994 2.57672 2.76480 3.15121 3.50615 3.54001 3.60104 3.64469 3.70189 3.79141 3.84432 3.92416 3.99384 4.06546 4.14489 4.22837 4.28751 4.55813 4.64790 4.67052 4.68617 4.71937 4.78313 4.80049 4.83029 4.92767 4.94199 5.01902 5.04595 5.08829 5.19882 5.34634 5.35325 5.37352 5.76712 6.03225 6.39367 6.40501 6.78069 7.25995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.101 3.899 3 C -0.140 4.140 4 C -0.174 4.174 5 O -0.372 6.372 6 C 0.068 3.932 7 H 0.097 0.903 8 C -0.164 4.164 9 C 0.145 3.855 10 H 0.102 0.898 11 N -0.680 5.680 12 C 0.551 3.449 13 N -0.579 5.579 14 C 0.194 3.806 15 C -0.288 4.288 16 C -0.046 4.046 17 O -0.554 6.554 18 Si 0.765 3.235 19 C 0.212 3.788 20 N -0.590 5.590 21 C -0.141 4.141 22 H 0.059 0.941 23 H 0.077 0.923 24 H 0.065 0.935 25 H 0.057 0.943 26 H 0.085 0.915 27 H 0.058 0.942 28 H 0.062 0.938 29 H 0.075 0.925 30 H 0.056 0.944 31 H 0.099 0.901 32 H 0.067 0.933 33 H 0.419 0.581 34 H 0.188 0.812 35 H 0.114 0.886 36 H 0.395 0.605 37 H -0.286 1.286 38 H -0.294 1.294 39 H 0.183 0.817 40 H 0.076 0.924 41 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.608 1.146 -4.187 4.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.062 3.938 3 C -0.197 4.197 4 C -0.231 4.231 5 O -0.292 6.292 6 C 0.009 3.991 7 H 0.114 0.886 8 C -0.203 4.203 9 C 0.039 3.961 10 H 0.120 0.880 11 N -0.316 5.316 12 C 0.194 3.806 13 N -0.301 5.301 14 C 0.027 3.973 15 C -0.296 4.296 16 C -0.157 4.157 17 O -0.361 6.361 18 Si 0.671 3.329 19 C 0.044 3.956 20 N -0.312 5.312 21 C -0.180 4.180 22 H 0.078 0.922 23 H 0.096 0.904 24 H 0.084 0.916 25 H 0.076 0.924 26 H 0.103 0.897 27 H 0.077 0.923 28 H 0.081 0.919 29 H 0.094 0.906 30 H 0.075 0.925 31 H 0.118 0.882 32 H 0.085 0.915 33 H 0.258 0.742 34 H 0.204 0.796 35 H 0.132 0.868 36 H 0.244 0.756 37 H -0.213 1.213 38 H -0.221 1.221 39 H 0.200 0.800 40 H 0.095 0.905 41 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -1.999 1.953 -3.526 4.500 hybrid contribution 0.132 -0.894 0.744 1.171 sum -1.867 1.059 -2.782 3.514 Atomic orbital electron populations 1.22454 0.94849 1.02925 1.03240 1.21689 0.93745 0.93201 0.85120 1.21799 1.01697 0.93209 1.03026 1.22447 1.01804 1.01048 0.97850 1.87966 1.74310 1.23177 1.43752 1.22766 0.96921 0.82026 0.97362 0.88568 1.24025 0.99602 1.00119 0.96551 1.22511 0.97012 0.84450 0.92100 0.87969 1.44318 1.06549 1.19402 1.61330 1.19714 0.87969 0.85409 0.87460 1.67961 1.02218 1.33795 1.26167 1.23185 0.92443 0.94506 0.87171 1.21769 0.99998 0.98124 1.09744 1.24784 0.92321 1.00834 0.97804 1.86478 1.83276 1.40742 1.25645 0.93964 0.75543 0.73524 0.89835 1.23161 0.85410 0.98629 0.88376 1.68021 1.24996 1.20190 1.18011 1.23658 0.95695 1.01809 0.96804 0.92201 0.90431 0.91612 0.92354 0.89669 0.92302 0.91936 0.90567 0.92454 0.88225 0.91452 0.74238 0.79589 0.86836 0.75559 1.21278 1.22099 0.80007 0.90499 0.86658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 0.47 8.38 71.98 0.60 1.07 16 2 C 0.10 -0.05 1.11 -10.79 -0.01 -0.06 16 3 C -0.14 0.12 8.84 71.98 0.64 0.76 16 4 C -0.17 0.35 8.38 71.98 0.60 0.95 16 5 O -0.37 -1.09 9.92 -148.98 -1.48 -2.56 16 6 C 0.07 -0.07 2.88 31.12 0.09 0.02 16 7 H 0.10 -0.36 5.54 -2.39 -0.01 -0.38 16 8 C -0.16 0.05 7.72 31.18 0.24 0.29 16 9 C 0.14 0.24 4.20 45.58 0.19 0.44 16 10 H 0.10 0.66 7.37 -2.39 -0.02 0.64 16 11 N -0.68 -1.89 5.51 -327.63 -1.80 -3.70 16 12 C 0.55 3.90 8.42 261.49 2.20 6.10 16 13 N -0.58 -3.87 9.13 -197.98 -1.81 -5.68 16 14 C 0.19 0.35 9.92 84.71 0.84 1.19 16 15 C -0.29 -0.20 5.36 -19.69 -0.11 -0.31 16 16 C -0.05 0.09 2.83 71.24 0.20 0.29 16 17 O -0.55 0.81 12.85 -148.98 -1.91 -1.10 16 18 Si 0.77 -2.45 29.88 68.60 2.05 -0.40 16 19 C 0.21 0.70 10.99 84.71 0.93 1.63 16 20 N -0.59 -4.21 10.46 -197.99 -2.07 -6.28 16 21 C -0.14 0.25 7.66 31.12 0.24 0.49 16 22 H 0.06 -0.07 8.14 -2.39 -0.02 -0.09 16 23 H 0.08 -0.34 8.14 -2.39 -0.02 -0.36 16 24 H 0.06 -0.25 6.24 -2.39 -0.01 -0.26 16 25 H 0.06 0.03 8.14 -2.38 -0.02 0.01 16 26 H 0.08 -0.33 8.14 -2.39 -0.02 -0.35 16 27 H 0.06 0.01 8.14 -2.39 -0.02 -0.01 16 28 H 0.06 -0.16 7.02 -2.38 -0.02 -0.18 16 29 H 0.08 -0.30 8.14 -2.39 -0.02 -0.32 16 30 H 0.06 -0.01 8.14 -2.39 -0.02 -0.03 16 31 H 0.10 -0.23 8.14 -2.39 -0.02 -0.25 16 32 H 0.07 0.17 8.14 -2.39 -0.02 0.15 16 33 H 0.42 -0.10 8.84 -92.71 -0.82 -0.92 16 34 H 0.19 -0.75 5.07 -2.91 -0.01 -0.76 16 35 H 0.11 -0.19 7.96 -2.39 -0.02 -0.21 16 36 H 0.39 -3.52 8.70 -74.06 -0.64 -4.16 16 37 H -0.29 -0.58 7.11 99.48 0.71 0.13 16 38 H -0.29 -1.21 7.11 99.48 0.71 -0.50 16 39 H 0.18 -0.10 8.06 -2.91 -0.02 -0.13 16 40 H 0.08 0.01 8.14 -2.39 -0.02 -0.01 16 41 H 0.12 -0.66 8.12 -2.39 -0.02 -0.68 16 Total: 0.00 -14.79 333.01 -0.75 -15.54 By element: Atomic # 1 Polarization: -8.31 SS G_CDS: -0.38 Total: -8.69 kcal Atomic # 6 Polarization: 6.21 SS G_CDS: 6.66 Total: 12.88 kcal Atomic # 7 Polarization: -9.97 SS G_CDS: -5.68 Total: -15.65 kcal Atomic # 8 Polarization: -0.28 SS G_CDS: -3.39 Total: -3.67 kcal Atomic # 14 Polarization: -2.45 SS G_CDS: 2.05 Total: -0.40 kcal Total: -14.79 -0.75 -15.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12113342_12175864.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.984 kcal (2) G-P(sol) polarization free energy of solvation -14.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.540 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds