Wall clock time and date at job start Mon Mar 8 2021 04:55:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.47121 * 2 1 4 4 C 1.53008 * 109.47089 * 240.00139 * 2 1 3 5 5 O 1.42898 * 109.46862 * 120.00346 * 2 1 3 6 6 C 1.42901 * 114.00258 * 59.99979 * 5 2 1 7 7 H 1.09002 * 112.84974 * 339.66626 * 6 5 2 8 8 C 1.53785 * 113.69063 * 110.93650 * 6 5 2 9 9 C 1.53777 * 87.08241 * 89.12535 * 8 6 5 10 10 H 1.08998 * 113.69520 * 270.87557 * 9 8 6 11 11 N 1.46499 * 113.61486 * 139.97730 * 9 8 6 12 12 C 1.39004 * 119.99861 * 107.50213 * 11 9 8 13 13 N 1.32395 * 119.70358 * 179.73333 * 12 11 9 14 14 C 1.31982 * 121.61949 * 179.71481 * 13 12 11 15 15 C 1.38019 * 120.85427 * 0.55800 * 14 13 12 16 16 C 1.50698 * 120.33564 * 179.70027 * 15 14 13 17 17 O 1.42896 * 109.47398 * 245.02441 * 16 15 14 18 18 Si 1.86303 * 109.47058 * 5.03036 * 16 15 14 19 19 C 1.38890 * 119.33129 * 359.73015 * 15 14 13 20 20 C 1.38301 * 118.50331 * 359.97438 * 19 15 14 21 21 C 1.53781 * 113.61413 * 208.47320 * 6 5 2 22 22 H 1.08994 * 109.47061 * 299.99871 * 1 2 3 23 23 H 1.09005 * 109.46847 * 59.99996 * 1 2 3 24 24 H 1.08995 * 109.46930 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.46855 * 179.97438 * 3 2 1 26 26 H 1.08992 * 109.47444 * 299.99923 * 3 2 1 27 27 H 1.09008 * 109.46871 * 59.99957 * 3 2 1 28 28 H 1.09000 * 109.47008 * 299.99853 * 4 2 1 29 29 H 1.08995 * 109.46667 * 60.00376 * 4 2 1 30 30 H 1.09001 * 109.46368 * 180.02562 * 4 2 1 31 31 H 1.08999 * 113.61060 * 203.67958 * 8 6 5 32 32 H 1.08997 * 113.61198 * 334.57751 * 8 6 5 33 33 H 0.97004 * 120.00097 * 287.50765 * 11 9 8 34 34 H 1.07993 * 119.57261 * 180.28666 * 14 13 12 35 35 H 1.09003 * 109.46905 * 125.02026 * 16 15 14 36 36 H 0.96702 * 113.99667 * 179.97438 * 17 16 15 37 37 H 1.48502 * 110.00209 * 178.67849 * 18 16 15 38 38 H 1.48501 * 109.99420 * 299.99485 * 18 16 15 39 39 H 1.07994 * 120.74610 * 180.02562 * 19 15 14 40 40 H 1.07999 * 120.44386 * 179.97438 * 20 19 15 41 41 H 1.09000 * 113.61578 * 25.34440 * 21 6 5 42 42 H 1.09001 * 113.61682 * 156.17020 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2493 5 8 2.0063 -0.6737 1.1667 6 6 1.5847 -2.0356 1.2644 7 1 0.7074 -2.2518 0.6547 8 6 2.7260 -3.0503 1.0835 9 6 2.9467 -2.9542 2.6023 10 1 3.6420 -2.1675 2.8949 11 7 3.2454 -4.2415 3.2345 12 6 4.5329 -4.5138 3.6823 13 7 4.7951 -5.6770 4.2576 14 6 6.0049 -5.9772 4.6916 15 6 7.0441 -5.0772 4.5699 16 6 8.4193 -5.4296 5.0755 17 8 8.7662 -4.5620 6.1567 18 14 8.4292 -7.1957 5.6685 19 6 6.8096 -3.8432 3.9772 20 6 5.5332 -3.5593 3.5267 21 6 1.4690 -2.5424 2.7117 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 3.1301 1.4424 0.0005 26 1 1.6768 1.9563 -0.8899 27 1 1.6767 1.9563 0.8901 28 1 1.6768 -1.7489 -1.2493 29 1 1.6768 -0.2073 -2.1392 30 1 3.1301 -0.7216 -1.2490 31 1 2.3885 -4.0325 0.7525 32 1 3.5607 -2.6683 0.4959 33 1 2.5448 -4.9040 3.3405 34 1 6.1829 -6.9378 5.1517 35 1 9.1437 -5.3131 4.2693 36 1 9.6407 -4.7323 6.5325 37 1 9.7879 -7.5655 6.1402 38 1 7.4457 -7.3677 6.7678 39 1 7.6062 -3.1219 3.8699 40 1 5.3158 -2.6093 3.0614 41 1 1.2892 -1.7503 3.4386 42 1 0.7869 -3.3848 2.8262 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_12113342_13915762.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:55:57 Heat of formation + Delta-G solvation = -4.911127 kcal Electronic energy + Delta-G solvation = -21861.367323 eV Core-core repulsion = 18616.224541 eV Total energy + Delta-G solvation = -3245.142783 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 279.162 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.49800 -40.80359 -38.68826 -37.78616 -35.37162 -33.65934 -33.16971 -31.13578 -28.54715 -28.46385 -26.73237 -26.65476 -25.01723 -24.41083 -22.30137 -21.68071 -20.11928 -18.75307 -18.50131 -18.14251 -17.45233 -16.74893 -16.47607 -16.29230 -15.91786 -15.57851 -15.26798 -15.08604 -14.80210 -14.41785 -14.19208 -14.05757 -13.85672 -13.79155 -13.55935 -13.45436 -13.16605 -12.95992 -12.81193 -12.74050 -12.60787 -12.20294 -12.04070 -11.85489 -11.79508 -11.19414 -10.94737 -10.62379 -10.50788 -10.48581 -10.20549 -8.59037 -4.92864 0.35768 0.54081 1.33396 1.62358 1.99433 2.18106 2.47212 2.89023 3.42264 3.46481 3.53545 3.67371 3.75449 3.81876 3.89200 3.90076 3.95112 4.02646 4.06189 4.17938 4.21040 4.41457 4.50513 4.51423 4.56738 4.59191 4.67908 4.69982 4.74781 4.81804 4.83613 4.85659 4.95041 4.97131 5.03072 5.09822 5.16297 5.23491 5.27328 5.42288 5.62967 6.10284 6.29606 6.49553 6.63759 7.26838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.107 3.893 3 C -0.139 4.139 4 C -0.177 4.177 5 O -0.354 6.354 6 C 0.065 3.935 7 H 0.084 0.916 8 C -0.174 4.174 9 C 0.138 3.862 10 H 0.114 0.886 11 N -0.712 5.712 12 C 0.408 3.592 13 N -0.540 5.540 14 C 0.157 3.843 15 C -0.189 4.189 16 C -0.060 4.060 17 O -0.538 6.538 18 Si 0.677 3.323 19 C -0.005 4.005 20 C -0.238 4.238 21 C -0.146 4.146 22 H 0.065 0.935 23 H 0.068 0.932 24 H 0.060 0.940 25 H 0.064 0.936 26 H 0.072 0.928 27 H 0.064 0.936 28 H 0.059 0.941 29 H 0.066 0.934 30 H 0.064 0.936 31 H 0.093 0.907 32 H 0.079 0.921 33 H 0.405 0.595 34 H 0.155 0.845 35 H 0.074 0.926 36 H 0.378 0.622 37 H -0.260 1.260 38 H -0.253 1.253 39 H 0.134 0.866 40 H 0.134 0.866 41 H 0.085 0.915 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.686 0.466 -4.307 4.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.068 3.932 3 C -0.197 4.197 4 C -0.234 4.234 5 O -0.273 6.273 6 C 0.006 3.994 7 H 0.102 0.898 8 C -0.213 4.213 9 C 0.032 3.968 10 H 0.132 0.868 11 N -0.343 5.343 12 C 0.172 3.828 13 N -0.257 5.257 14 C 0.000 4.000 15 C -0.194 4.194 16 C -0.170 4.170 17 O -0.345 6.345 18 Si 0.578 3.422 19 C -0.031 4.031 20 C -0.263 4.263 21 C -0.185 4.185 22 H 0.084 0.916 23 H 0.087 0.913 24 H 0.079 0.921 25 H 0.083 0.917 26 H 0.091 0.909 27 H 0.083 0.917 28 H 0.078 0.922 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.111 0.889 32 H 0.097 0.903 33 H 0.241 0.759 34 H 0.171 0.829 35 H 0.092 0.908 36 H 0.226 0.774 37 H -0.185 1.185 38 H -0.178 1.178 39 H 0.152 0.848 40 H 0.152 0.848 41 H 0.103 0.897 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -1.730 -0.151 -3.609 4.005 hybrid contribution 1.015 0.969 0.369 1.451 sum -0.715 0.818 -3.241 3.418 Atomic orbital electron populations 1.22474 0.95526 1.02568 1.03148 1.21569 0.93207 0.93172 0.85237 1.21775 1.02072 0.93080 1.02724 1.22478 1.02297 1.00868 0.97800 1.87964 1.73868 1.22411 1.43100 1.22755 0.96906 0.82575 0.97144 0.89825 1.24103 0.99929 0.99891 0.97371 1.22538 0.96843 0.85288 0.92124 0.86844 1.44572 1.07480 1.18074 1.64217 1.18436 0.86216 0.89134 0.88970 1.67184 1.22720 1.19254 1.16516 1.22184 0.86516 0.98019 0.93291 1.19893 0.95494 0.97313 1.06741 1.24524 0.95451 1.05222 0.91847 1.86604 1.39593 1.57660 1.50654 0.95185 0.81086 0.78252 0.87666 1.21169 0.96059 0.94862 0.91008 1.21483 0.93493 1.01337 1.09954 1.23614 0.96273 1.01485 0.97089 0.91557 0.91293 0.92112 0.91698 0.90940 0.91696 0.92170 0.91459 0.91656 0.88867 0.90271 0.75860 0.82851 0.90847 0.77409 1.18529 1.17794 0.84838 0.84781 0.89680 0.88419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 0.24 8.38 37.16 0.31 0.55 16 2 C 0.11 -0.07 1.12 -90.61 -0.10 -0.17 16 3 C -0.14 0.13 8.84 37.16 0.33 0.46 16 4 C -0.18 0.22 8.36 37.16 0.31 0.53 16 5 O -0.35 -0.22 9.92 -35.23 -0.35 -0.57 16 6 C 0.07 -0.07 2.87 -25.92 -0.07 -0.14 16 7 H 0.08 -0.15 5.59 -51.93 -0.29 -0.44 16 8 C -0.17 0.18 7.64 -25.92 -0.20 -0.01 16 9 C 0.14 -0.06 3.96 -67.11 -0.27 -0.33 16 10 H 0.11 0.02 6.10 -51.93 -0.32 -0.30 16 11 N -0.71 -0.55 5.53 -53.14 -0.29 -0.85 16 12 C 0.41 1.23 7.65 -155.02 -1.19 0.04 16 13 N -0.54 -2.22 10.39 -12.44 -0.13 -2.35 16 14 C 0.16 0.46 9.84 -17.57 -0.17 0.29 16 15 C -0.19 -0.46 5.39 -104.46 -0.56 -1.02 16 16 C -0.06 -0.04 2.81 36.00 0.10 0.07 16 17 O -0.54 -0.97 12.82 -35.23 -0.45 -1.42 16 18 Si 0.68 -0.22 29.88 -169.99 -5.08 -5.30 16 19 C -0.01 -0.01 9.84 -39.32 -0.39 -0.40 16 20 C -0.24 -0.53 9.29 -39.23 -0.36 -0.89 16 21 C -0.15 0.19 7.66 -25.91 -0.20 -0.01 16 22 H 0.07 -0.05 8.14 -51.93 -0.42 -0.48 16 23 H 0.07 -0.13 8.14 -51.93 -0.42 -0.56 16 24 H 0.06 -0.10 6.23 -51.93 -0.32 -0.42 16 25 H 0.06 -0.04 8.14 -51.93 -0.42 -0.46 16 26 H 0.07 -0.15 8.14 -51.93 -0.42 -0.57 16 27 H 0.06 -0.04 8.14 -51.92 -0.42 -0.46 16 28 H 0.06 -0.08 7.01 -51.93 -0.36 -0.45 16 29 H 0.07 -0.12 8.14 -51.93 -0.42 -0.55 16 30 H 0.06 -0.05 8.14 -51.93 -0.42 -0.47 16 31 H 0.09 -0.13 8.14 -51.93 -0.42 -0.56 16 32 H 0.08 -0.03 8.14 -51.93 -0.42 -0.45 16 33 H 0.41 0.01 8.85 -40.82 -0.36 -0.35 16 34 H 0.15 0.15 4.87 -52.49 -0.26 -0.11 16 35 H 0.07 -0.09 7.96 -51.93 -0.41 -0.50 16 36 H 0.38 -0.86 8.74 45.56 0.40 -0.46 16 37 H -0.26 -0.39 7.11 56.52 0.40 0.01 16 38 H -0.25 -0.71 7.05 56.52 0.40 -0.31 16 39 H 0.13 0.09 8.06 -52.49 -0.42 -0.33 16 40 H 0.13 0.09 6.04 -52.49 -0.32 -0.23 16 41 H 0.08 -0.05 8.14 -51.93 -0.42 -0.47 16 42 H 0.10 -0.24 8.12 -51.93 -0.42 -0.66 16 LS Contribution 335.33 15.07 5.05 5.05 Total: 0.00 -5.79 335.33 -10.22 -16.01 By element: Atomic # 1 Polarization: -3.04 SS G_CDS: -6.52 Total: -9.55 kcal Atomic # 6 Polarization: 1.42 SS G_CDS: -2.46 Total: -1.03 kcal Atomic # 7 Polarization: -2.77 SS G_CDS: -0.42 Total: -3.19 kcal Atomic # 8 Polarization: -1.18 SS G_CDS: -0.80 Total: -1.98 kcal Atomic # 14 Polarization: -0.22 SS G_CDS: -5.08 Total: -5.30 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -5.79 -10.22 -16.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12113342_13915762.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.101 kcal (2) G-P(sol) polarization free energy of solvation -5.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds