Wall clock time and date at job start Mon Mar 8 2021 04:55:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.47121 * 2 1 4 4 C 1.53008 * 109.47089 * 240.00139 * 2 1 3 5 5 O 1.42898 * 109.46862 * 120.00346 * 2 1 3 6 6 C 1.42901 * 114.00258 * 59.99979 * 5 2 1 7 7 H 1.09002 * 112.84974 * 339.66626 * 6 5 2 8 8 C 1.53785 * 113.69063 * 110.93650 * 6 5 2 9 9 C 1.53777 * 87.08241 * 89.12535 * 8 6 5 10 10 H 1.08998 * 113.69520 * 270.87557 * 9 8 6 11 11 N 1.46499 * 113.61486 * 139.97730 * 9 8 6 12 12 C 1.39004 * 119.99861 * 107.50213 * 11 9 8 13 13 N 1.32395 * 119.70358 * 179.73333 * 12 11 9 14 14 C 1.31982 * 121.61949 * 179.71481 * 13 12 11 15 15 C 1.38019 * 120.85427 * 0.55800 * 14 13 12 16 16 C 1.50698 * 120.33564 * 179.70027 * 15 14 13 17 17 O 1.42896 * 109.47398 * 245.02441 * 16 15 14 18 18 Si 1.86303 * 109.47058 * 5.03036 * 16 15 14 19 19 C 1.38890 * 119.33129 * 359.73015 * 15 14 13 20 20 C 1.38301 * 118.50331 * 359.97438 * 19 15 14 21 21 C 1.53781 * 113.61413 * 208.47320 * 6 5 2 22 22 H 1.08994 * 109.47061 * 299.99871 * 1 2 3 23 23 H 1.09005 * 109.46847 * 59.99996 * 1 2 3 24 24 H 1.08995 * 109.46930 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.46855 * 179.97438 * 3 2 1 26 26 H 1.08992 * 109.47444 * 299.99923 * 3 2 1 27 27 H 1.09008 * 109.46871 * 59.99957 * 3 2 1 28 28 H 1.09000 * 109.47008 * 299.99853 * 4 2 1 29 29 H 1.08995 * 109.46667 * 60.00376 * 4 2 1 30 30 H 1.09001 * 109.46368 * 180.02562 * 4 2 1 31 31 H 1.08999 * 113.61060 * 203.67958 * 8 6 5 32 32 H 1.08997 * 113.61198 * 334.57751 * 8 6 5 33 33 H 0.97004 * 120.00097 * 287.50765 * 11 9 8 34 34 H 1.07993 * 119.57261 * 180.28666 * 14 13 12 35 35 H 1.09003 * 109.46905 * 125.02026 * 16 15 14 36 36 H 0.96702 * 113.99667 * 179.97438 * 17 16 15 37 37 H 1.48502 * 110.00209 * 178.67849 * 18 16 15 38 38 H 1.48501 * 109.99420 * 299.99485 * 18 16 15 39 39 H 1.07994 * 120.74610 * 180.02562 * 19 15 14 40 40 H 1.07999 * 120.44386 * 179.97438 * 20 19 15 41 41 H 1.09000 * 113.61578 * 25.34440 * 21 6 5 42 42 H 1.09001 * 113.61682 * 156.17020 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2493 5 8 2.0063 -0.6737 1.1667 6 6 1.5847 -2.0356 1.2644 7 1 0.7074 -2.2518 0.6547 8 6 2.7260 -3.0503 1.0835 9 6 2.9467 -2.9542 2.6023 10 1 3.6420 -2.1675 2.8949 11 7 3.2454 -4.2415 3.2345 12 6 4.5329 -4.5138 3.6823 13 7 4.7951 -5.6770 4.2576 14 6 6.0049 -5.9772 4.6916 15 6 7.0441 -5.0772 4.5699 16 6 8.4193 -5.4296 5.0755 17 8 8.7662 -4.5620 6.1567 18 14 8.4292 -7.1957 5.6685 19 6 6.8096 -3.8432 3.9772 20 6 5.5332 -3.5593 3.5267 21 6 1.4690 -2.5424 2.7117 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 3.1301 1.4424 0.0005 26 1 1.6768 1.9563 -0.8899 27 1 1.6767 1.9563 0.8901 28 1 1.6768 -1.7489 -1.2493 29 1 1.6768 -0.2073 -2.1392 30 1 3.1301 -0.7216 -1.2490 31 1 2.3885 -4.0325 0.7525 32 1 3.5607 -2.6683 0.4959 33 1 2.5448 -4.9040 3.3405 34 1 6.1829 -6.9378 5.1517 35 1 9.1437 -5.3131 4.2693 36 1 9.6407 -4.7323 6.5325 37 1 9.7879 -7.5655 6.1402 38 1 7.4457 -7.3677 6.7678 39 1 7.6062 -3.1219 3.8699 40 1 5.3158 -2.6093 3.0614 41 1 1.2892 -1.7503 3.4386 42 1 0.7869 -3.3848 2.8262 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_12113342_13915762.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:55:56 Heat of formation + Delta-G solvation = -1.349757 kcal Electronic energy + Delta-G solvation = -21861.212891 eV Core-core repulsion = 18616.224541 eV Total energy + Delta-G solvation = -3244.988350 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 279.162 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.56583 -40.81619 -38.66870 -37.84050 -35.41184 -33.68570 -33.26591 -31.22505 -28.45655 -28.35142 -26.73408 -26.63720 -25.07749 -24.49068 -22.39638 -21.63300 -20.06767 -18.83779 -18.55961 -18.18349 -17.46169 -16.73955 -16.53391 -16.28959 -15.88052 -15.63100 -15.36806 -15.17652 -14.75416 -14.37920 -14.18841 -14.13048 -13.93832 -13.88410 -13.49867 -13.38191 -13.05636 -12.85594 -12.76005 -12.65203 -12.56218 -12.28643 -12.06778 -11.89429 -11.73929 -11.15078 -10.98671 -10.76256 -10.61666 -10.43331 -10.30744 -8.68941 -4.91806 0.20062 0.38599 1.32231 1.59758 1.95517 2.12078 2.56231 2.75854 3.45703 3.48382 3.57919 3.60119 3.81330 3.83037 3.91493 3.97230 3.99049 4.00377 4.08733 4.11507 4.26649 4.35468 4.48815 4.63796 4.66186 4.70864 4.74063 4.74824 4.79458 4.82871 4.91961 4.93478 4.99701 5.01631 5.03655 5.11695 5.21308 5.31294 5.34165 5.36119 5.53071 6.02657 6.37676 6.55011 6.63452 7.12671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.102 3.898 3 C -0.140 4.140 4 C -0.174 4.174 5 O -0.372 6.372 6 C 0.066 3.934 7 H 0.094 0.906 8 C -0.166 4.166 9 C 0.136 3.864 10 H 0.105 0.895 11 N -0.707 5.707 12 C 0.394 3.606 13 N -0.563 5.563 14 C 0.144 3.856 15 C -0.199 4.199 16 C -0.067 4.067 17 O -0.560 6.560 18 Si 0.754 3.246 19 C -0.013 4.013 20 C -0.244 4.244 21 C -0.141 4.141 22 H 0.059 0.941 23 H 0.076 0.924 24 H 0.065 0.935 25 H 0.058 0.942 26 H 0.084 0.916 27 H 0.058 0.942 28 H 0.062 0.938 29 H 0.074 0.926 30 H 0.058 0.942 31 H 0.100 0.900 32 H 0.072 0.928 33 H 0.408 0.592 34 H 0.165 0.835 35 H 0.096 0.904 36 H 0.394 0.606 37 H -0.281 1.281 38 H -0.300 1.300 39 H 0.147 0.853 40 H 0.145 0.855 41 H 0.077 0.923 42 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.716 0.482 -5.093 5.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.063 3.937 3 C -0.197 4.197 4 C -0.232 4.232 5 O -0.292 6.292 6 C 0.007 3.993 7 H 0.112 0.888 8 C -0.205 4.205 9 C 0.030 3.970 10 H 0.123 0.877 11 N -0.338 5.338 12 C 0.158 3.842 13 N -0.281 5.281 14 C -0.013 4.013 15 C -0.204 4.204 16 C -0.177 4.177 17 O -0.370 6.370 18 Si 0.660 3.340 19 C -0.039 4.039 20 C -0.268 4.268 21 C -0.179 4.179 22 H 0.078 0.922 23 H 0.095 0.905 24 H 0.083 0.917 25 H 0.077 0.923 26 H 0.102 0.898 27 H 0.077 0.923 28 H 0.081 0.919 29 H 0.093 0.907 30 H 0.077 0.923 31 H 0.118 0.882 32 H 0.090 0.910 33 H 0.245 0.755 34 H 0.182 0.818 35 H 0.114 0.886 36 H 0.245 0.755 37 H -0.208 1.208 38 H -0.227 1.227 39 H 0.165 0.835 40 H 0.163 0.837 41 H 0.096 0.904 42 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -1.753 -0.123 -4.417 4.753 hybrid contribution 1.020 0.989 0.651 1.563 sum -0.733 0.866 -3.766 3.933 Atomic orbital electron populations 1.22456 0.94960 1.02893 1.03215 1.21681 0.93686 0.93191 0.85143 1.21800 1.01718 0.93194 1.03015 1.22450 1.01855 1.01055 0.97797 1.87945 1.74293 1.23175 1.43756 1.22794 0.97141 0.81992 0.97356 0.88827 1.24042 0.99698 1.00175 0.96579 1.22583 0.97262 0.84586 0.92560 0.87677 1.44626 1.06877 1.18460 1.63837 1.18685 0.87140 0.89151 0.89188 1.67183 1.23434 1.20017 1.17447 1.22443 0.86572 0.98784 0.93508 1.20118 0.96258 0.97320 1.06672 1.24697 0.95066 1.05466 0.92421 1.86553 1.41079 1.58262 1.51131 0.94276 0.77656 0.76735 0.85341 1.21419 0.96456 0.95186 0.90790 1.21654 0.93525 1.01672 1.09989 1.23616 0.95831 1.01661 0.96789 0.92215 0.90491 0.91654 0.92269 0.89757 0.92300 0.91913 0.90674 0.92315 0.88199 0.90957 0.75514 0.81844 0.88609 0.75540 1.20772 1.22746 0.83531 0.83726 0.90446 0.86983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 0.54 8.38 71.98 0.60 1.14 16 2 C 0.10 -0.13 1.12 -10.79 -0.01 -0.14 16 3 C -0.14 0.23 8.84 71.98 0.64 0.87 16 4 C -0.17 0.49 8.36 71.98 0.60 1.09 16 5 O -0.37 -0.55 9.92 -148.98 -1.48 -2.03 16 6 C 0.07 -0.14 2.87 31.12 0.09 -0.06 16 7 H 0.09 -0.40 5.59 -2.39 -0.01 -0.41 16 8 C -0.17 0.36 7.64 31.12 0.24 0.59 16 9 C 0.14 -0.07 3.96 45.52 0.18 0.11 16 10 H 0.11 0.12 6.10 -2.39 -0.01 0.11 16 11 N -0.71 -1.43 5.53 -322.04 -1.78 -3.21 16 12 C 0.39 2.67 7.65 133.06 1.02 3.69 16 13 N -0.56 -5.15 10.39 -193.27 -2.01 -7.16 16 14 C 0.14 0.95 9.84 84.62 0.83 1.78 16 15 C -0.20 -1.01 5.39 -19.76 -0.11 -1.11 16 16 C -0.07 -0.05 2.81 71.24 0.20 0.15 16 17 O -0.56 -1.89 12.82 -148.98 -1.91 -3.80 16 18 Si 0.75 -0.43 29.88 68.60 2.05 1.62 16 19 C -0.01 -0.06 9.84 22.44 0.22 0.16 16 20 C -0.24 -1.22 9.29 22.50 0.21 -1.01 16 21 C -0.14 0.37 7.66 31.12 0.24 0.61 16 22 H 0.06 -0.09 8.14 -2.39 -0.02 -0.11 16 23 H 0.08 -0.36 8.14 -2.38 -0.02 -0.38 16 24 H 0.06 -0.26 6.23 -2.39 -0.01 -0.28 16 25 H 0.06 -0.04 8.14 -2.38 -0.02 -0.05 16 26 H 0.08 -0.36 8.14 -2.39 -0.02 -0.38 16 27 H 0.06 -0.03 8.14 -2.38 -0.02 -0.05 16 28 H 0.06 -0.21 7.01 -2.39 -0.02 -0.23 16 29 H 0.07 -0.33 8.14 -2.39 -0.02 -0.35 16 30 H 0.06 -0.08 8.14 -2.39 -0.02 -0.10 16 31 H 0.10 -0.34 8.14 -2.39 -0.02 -0.35 16 32 H 0.07 -0.03 8.14 -2.39 -0.02 -0.05 16 33 H 0.41 0.17 8.85 -92.71 -0.82 -0.65 16 34 H 0.16 0.47 4.87 -2.91 -0.01 0.46 16 35 H 0.10 -0.35 7.96 -2.39 -0.02 -0.37 16 36 H 0.39 -1.95 8.74 -74.06 -0.65 -2.60 16 37 H -0.28 -0.79 7.11 99.48 0.71 -0.08 16 38 H -0.30 -2.12 7.05 99.48 0.70 -1.42 16 39 H 0.15 0.18 8.06 -2.91 -0.02 0.15 16 40 H 0.15 0.28 6.04 -2.91 -0.02 0.27 16 41 H 0.08 -0.06 8.14 -2.39 -0.02 -0.08 16 42 H 0.11 -0.62 8.12 -2.39 -0.02 -0.64 16 Total: 0.00 -13.74 335.33 -0.58 -14.32 By element: Atomic # 1 Polarization: -7.20 SS G_CDS: -0.41 Total: -7.60 kcal Atomic # 6 Polarization: 2.91 SS G_CDS: 4.95 Total: 7.86 kcal Atomic # 7 Polarization: -6.58 SS G_CDS: -3.79 Total: -10.37 kcal Atomic # 8 Polarization: -2.44 SS G_CDS: -3.39 Total: -5.83 kcal Atomic # 14 Polarization: -0.43 SS G_CDS: 2.05 Total: 1.62 kcal Total: -13.74 -0.58 -14.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12113342_13915762.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.971 kcal (2) G-P(sol) polarization free energy of solvation -13.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds