Wall clock time and date at job start Mon Mar 8 2021 04:56:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47167 * 2 1 4 4 C 1.52997 * 109.47202 * 239.99470 * 2 1 3 5 5 O 1.42904 * 109.46790 * 119.99667 * 2 1 3 6 6 C 1.42895 * 113.99895 * 60.00170 * 5 2 1 7 7 H 1.08994 * 112.91148 * 18.74861 * 6 5 2 8 8 C 1.53787 * 113.61204 * 150.00156 * 6 5 2 9 9 C 1.53779 * 87.07963 * 139.97889 * 8 6 5 10 10 H 1.08999 * 113.61062 * 219.93155 * 9 8 6 11 11 N 1.46502 * 113.61301 * 89.11687 * 9 8 6 12 12 C 1.38611 * 119.99634 * 155.00011 * 11 9 8 13 13 N 1.29681 * 124.95472 * 359.68937 * 12 11 9 14 14 C 1.32123 * 116.86860 * 179.81504 * 13 12 11 15 15 C 1.33325 * 114.57856 * 0.47917 * 14 13 12 16 16 C 1.50699 * 125.95008 * 179.75355 * 15 14 13 17 17 O 1.42903 * 109.47342 * 65.02284 * 16 15 14 18 18 Si 1.86305 * 109.46781 * 185.01958 * 16 15 14 19 19 S 1.70972 * 124.94414 * 179.97438 * 12 11 9 20 20 C 1.53779 * 87.08402 * 334.56577 * 9 8 6 21 21 H 1.08998 * 109.47657 * 300.00681 * 1 2 3 22 22 H 1.09010 * 109.46818 * 60.00243 * 1 2 3 23 23 H 1.08997 * 109.47442 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47375 * 180.02562 * 3 2 1 25 25 H 1.09006 * 109.46932 * 300.00094 * 3 2 1 26 26 H 1.08998 * 109.47388 * 59.99154 * 3 2 1 27 27 H 1.08997 * 109.47278 * 300.00536 * 4 2 1 28 28 H 1.09001 * 109.47226 * 60.00508 * 4 2 1 29 29 H 1.08998 * 109.47119 * 179.97438 * 4 2 1 30 30 H 1.08997 * 113.61028 * 254.52849 * 8 6 5 31 31 H 1.09000 * 113.61529 * 25.42988 * 8 6 5 32 32 H 0.96996 * 120.00397 * 334.99617 * 11 9 8 33 33 H 1.08004 * 122.70940 * 180.22503 * 14 13 12 34 34 H 1.08999 * 109.46977 * 305.02100 * 16 15 14 35 35 H 0.96696 * 113.99961 * 59.99378 * 17 16 15 36 36 H 1.48503 * 109.99910 * 180.02562 * 18 16 15 37 37 H 1.48498 * 109.99996 * 301.31452 * 18 16 15 38 38 H 1.09002 * 113.61557 * 270.88569 * 20 9 8 39 39 H 1.09004 * 113.61501 * 139.97990 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 8 2.0063 -0.6736 1.1669 6 6 1.5846 -2.0354 1.2646 7 1 1.2512 -2.4458 0.3115 8 6 2.5836 -2.9377 2.0081 9 6 1.3666 -3.6117 2.6634 10 1 1.5128 -3.8468 3.7176 11 7 0.8383 -4.7425 1.8962 12 6 0.1294 -5.7453 2.5391 13 7 -0.1170 -5.7822 3.8118 14 6 -0.8126 -6.8141 4.2556 15 6 -1.1611 -7.6933 3.3160 16 6 -1.9484 -8.9592 3.5372 17 8 -3.2682 -8.6291 3.9745 18 14 -2.0442 -9.9175 1.9424 19 16 -0.5417 -7.1172 1.7706 20 6 0.6075 -2.2961 2.4232 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5139 -0.8901 23 1 -0.3634 -1.0276 0.0005 24 1 3.1300 1.4426 -0.0005 25 1 1.6766 1.9564 -0.8900 26 1 1.6766 1.9564 0.8899 27 1 1.6766 -1.7490 -1.2491 28 1 1.6768 -0.2076 -2.1392 29 1 3.1300 -0.7209 -1.2494 30 1 3.1476 -3.5992 1.3505 31 1 3.2170 -2.3996 2.7133 32 1 0.9846 -4.7896 0.9385 33 1 -1.0740 -6.9375 5.2963 34 1 -1.4551 -9.5658 4.2966 35 1 -3.7670 -8.0888 3.3465 36 1 -2.8186 -11.1679 2.1470 37 1 -2.6862 -9.0895 0.8901 38 1 0.7007 -1.5825 3.2419 39 1 -0.4238 -2.4396 2.1007 There are 50 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 50 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_12113342_15704118.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:56:00 Heat of formation + Delta-G solvation = -0.521228 kcal Electronic energy + Delta-G solvation = -20488.494049 eV Core-core repulsion = 17332.693873 eV Total energy + Delta-G solvation = -3155.800176 eV No. of doubly occupied orbitals = 50 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 285.119 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.29410 -40.45947 -38.79482 -37.87462 -35.18144 -33.54069 -31.13953 -28.55682 -28.46100 -26.83442 -26.64365 -25.66137 -24.24599 -21.69077 -21.16301 -20.14416 -19.59452 -18.19172 -17.76694 -17.16176 -16.66862 -16.41503 -16.30054 -15.98472 -15.83616 -15.44792 -14.96105 -14.72885 -14.59465 -14.21543 -13.85963 -13.64802 -13.46520 -13.22667 -13.00898 -12.92291 -12.81728 -12.75298 -12.64863 -12.38318 -12.00833 -11.92565 -11.67272 -11.35198 -11.11715 -10.88194 -10.41847 -10.25204 -10.20322 -8.76977 -5.05402 -0.04191 0.01097 0.68114 1.24436 1.54371 1.89946 2.02533 2.05864 2.66091 3.34226 3.38124 3.47987 3.61597 3.76419 3.81210 3.84663 3.91173 3.94403 4.01901 4.30122 4.48206 4.53489 4.56227 4.66026 4.68578 4.72180 4.73357 4.75115 4.81820 4.83716 4.88391 4.93759 4.99356 5.06597 5.21661 5.23557 5.28450 5.82856 6.00424 6.34583 6.35692 7.00057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.105 3.895 3 C -0.139 4.139 4 C -0.179 4.179 5 O -0.359 6.359 6 C 0.061 3.939 7 H 0.087 0.913 8 C -0.143 4.143 9 C 0.137 3.863 10 H 0.113 0.887 11 N -0.677 5.677 12 C 0.328 3.672 13 N -0.548 5.548 14 C 0.120 3.880 15 C -0.304 4.304 16 C -0.017 4.017 17 O -0.526 6.526 18 Si 0.653 3.347 19 S 0.087 5.913 20 C -0.166 4.166 21 H 0.065 0.935 22 H 0.066 0.934 23 H 0.056 0.944 24 H 0.064 0.936 25 H 0.070 0.930 26 H 0.064 0.936 27 H 0.057 0.943 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.078 0.922 31 H 0.107 0.893 32 H 0.413 0.587 33 H 0.177 0.823 34 H 0.126 0.874 35 H 0.376 0.624 36 H -0.237 1.237 37 H -0.243 1.243 38 H 0.100 0.900 39 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.872 0.286 -3.836 4.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.066 3.934 3 C -0.196 4.196 4 C -0.236 4.236 5 O -0.279 6.279 6 C 0.003 3.997 7 H 0.105 0.895 8 C -0.182 4.182 9 C 0.029 3.971 10 H 0.131 0.869 11 N -0.316 5.316 12 C -0.042 4.042 13 N -0.273 5.273 14 C -0.031 4.031 15 C -0.427 4.427 16 C -0.131 4.131 17 O -0.332 6.332 18 Si 0.553 3.447 19 S 0.337 5.663 20 C -0.205 4.205 21 H 0.084 0.916 22 H 0.085 0.915 23 H 0.075 0.925 24 H 0.083 0.917 25 H 0.089 0.911 26 H 0.083 0.917 27 H 0.076 0.924 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.096 0.904 31 H 0.126 0.874 32 H 0.250 0.750 33 H 0.193 0.807 34 H 0.143 0.857 35 H 0.224 0.776 36 H -0.161 1.161 37 H -0.168 1.168 38 H 0.119 0.881 39 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.874 -0.122 -4.397 4.781 hybrid contribution -1.199 0.628 0.427 1.419 sum 0.675 0.506 -3.970 4.058 Atomic orbital electron populations 1.22469 0.95499 1.02414 1.02974 1.21542 0.93200 0.93341 0.85341 1.21771 1.02042 0.93161 1.02665 1.22469 1.02370 1.00719 0.98056 1.88047 1.73756 1.23177 1.42882 1.23733 0.95569 0.83063 0.97365 0.89484 1.23659 0.96811 0.97332 1.00368 1.21684 0.93875 0.84324 0.97194 0.86887 1.43720 1.57589 1.20740 1.09504 1.23685 0.95550 0.93167 0.91831 1.66478 1.23023 1.27472 1.10313 1.21352 0.93278 0.87618 1.00816 1.25521 1.16427 1.06797 0.93954 1.24079 0.82934 0.95346 1.10703 1.86620 1.25253 1.73857 1.47517 0.95176 0.91886 0.81627 0.76053 1.84034 1.53056 1.17592 1.11647 1.24044 0.99265 0.97320 0.99918 0.91619 0.91521 0.92452 0.91706 0.91067 0.91698 0.92396 0.91321 0.91531 0.90375 0.87445 0.74964 0.80655 0.85661 0.77590 1.16089 1.16756 0.88138 0.91014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 0.13 8.38 37.16 0.31 0.44 16 2 C 0.10 -0.02 1.11 -90.62 -0.10 -0.13 16 3 C -0.14 0.08 8.84 37.16 0.33 0.41 16 4 C -0.18 0.22 8.38 37.16 0.31 0.53 16 5 O -0.36 -0.41 10.00 -35.23 -0.35 -0.76 16 6 C 0.06 -0.05 2.69 -25.91 -0.07 -0.12 16 7 H 0.09 -0.16 5.55 -51.93 -0.29 -0.45 16 8 C -0.14 0.20 7.66 -25.92 -0.20 0.00 16 9 C 0.14 -0.08 4.44 -67.12 -0.30 -0.37 16 10 H 0.11 0.10 7.66 -51.93 -0.40 -0.29 16 11 N -0.68 0.56 5.42 -54.99 -0.30 0.26 16 12 C 0.33 0.39 8.09 -87.68 -0.71 -0.32 16 13 N -0.55 -1.61 9.83 -15.21 -0.15 -1.76 16 14 C 0.12 0.23 11.24 -19.14 -0.22 0.01 16 15 C -0.30 -0.21 5.73 -36.02 -0.21 -0.42 16 16 C -0.02 0.00 2.99 36.01 0.11 0.11 16 17 O -0.53 -0.62 12.88 -35.23 -0.45 -1.08 16 18 Si 0.65 -0.43 31.07 -169.99 -5.28 -5.71 16 19 S 0.09 -0.01 20.59 -107.50 -2.21 -2.22 16 20 C -0.17 0.05 7.71 -25.92 -0.20 -0.15 16 21 H 0.06 0.00 8.14 -51.93 -0.42 -0.43 16 22 H 0.07 -0.09 8.14 -51.92 -0.42 -0.52 16 23 H 0.06 -0.05 7.02 -51.93 -0.36 -0.41 16 24 H 0.06 -0.02 8.14 -51.93 -0.42 -0.44 16 25 H 0.07 -0.12 8.14 -51.93 -0.42 -0.54 16 26 H 0.06 -0.01 8.14 -51.93 -0.42 -0.43 16 27 H 0.06 -0.10 6.25 -51.93 -0.32 -0.43 16 28 H 0.07 -0.13 8.14 -51.93 -0.42 -0.55 16 29 H 0.07 -0.05 8.14 -51.93 -0.42 -0.48 16 30 H 0.08 -0.17 8.14 -51.93 -0.42 -0.59 16 31 H 0.11 -0.11 8.14 -51.93 -0.42 -0.53 16 32 H 0.41 -1.21 8.83 -40.82 -0.36 -1.57 16 33 H 0.18 0.12 8.06 -52.48 -0.42 -0.30 16 34 H 0.13 -0.14 7.96 -51.93 -0.41 -0.55 16 35 H 0.38 -0.53 8.70 45.56 0.40 -0.13 16 36 H -0.24 -0.49 7.11 56.52 0.40 -0.08 16 37 H -0.24 -0.29 7.11 56.52 0.40 0.12 16 38 H 0.10 0.03 8.14 -51.93 -0.42 -0.39 16 39 H 0.07 0.02 8.14 -51.93 -0.42 -0.40 16 LS Contribution 330.84 15.07 4.99 4.99 Total: 0.00 -4.95 330.84 -10.72 -15.67 By element: Atomic # 1 Polarization: -3.36 SS G_CDS: -6.02 Total: -9.39 kcal Atomic # 6 Polarization: 0.94 SS G_CDS: -0.94 Total: 0.00 kcal Atomic # 7 Polarization: -1.05 SS G_CDS: -0.45 Total: -1.50 kcal Atomic # 8 Polarization: -1.03 SS G_CDS: -0.81 Total: -1.84 kcal Atomic # 14 Polarization: -0.43 SS G_CDS: -5.28 Total: -5.71 kcal Atomic # 16 Polarization: -0.01 SS G_CDS: -2.21 Total: -2.22 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -4.95 -10.72 -15.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12113342_15704118.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.149 kcal (2) G-P(sol) polarization free energy of solvation -4.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds