Wall clock time and date at job start Mon Mar 8 2021 04:55:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47167 * 2 1 4 4 C 1.52997 * 109.47202 * 239.99470 * 2 1 3 5 5 O 1.42904 * 109.46790 * 119.99667 * 2 1 3 6 6 C 1.42895 * 113.99895 * 60.00170 * 5 2 1 7 7 H 1.08994 * 112.91148 * 18.74861 * 6 5 2 8 8 C 1.53787 * 113.61204 * 150.00156 * 6 5 2 9 9 C 1.53779 * 87.07963 * 139.97889 * 8 6 5 10 10 H 1.08999 * 113.61062 * 219.93155 * 9 8 6 11 11 N 1.46502 * 113.61301 * 89.11687 * 9 8 6 12 12 C 1.38611 * 119.99634 * 155.00011 * 11 9 8 13 13 N 1.29681 * 124.95472 * 359.68937 * 12 11 9 14 14 C 1.32123 * 116.86860 * 179.81504 * 13 12 11 15 15 C 1.33325 * 114.57856 * 0.47917 * 14 13 12 16 16 C 1.50699 * 125.95008 * 179.75355 * 15 14 13 17 17 O 1.42903 * 109.47342 * 65.02284 * 16 15 14 18 18 Si 1.86305 * 109.46781 * 185.01958 * 16 15 14 19 19 S 1.70972 * 124.94414 * 179.97438 * 12 11 9 20 20 C 1.53779 * 87.08402 * 334.56577 * 9 8 6 21 21 H 1.08998 * 109.47657 * 300.00681 * 1 2 3 22 22 H 1.09010 * 109.46818 * 60.00243 * 1 2 3 23 23 H 1.08997 * 109.47442 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47375 * 180.02562 * 3 2 1 25 25 H 1.09006 * 109.46932 * 300.00094 * 3 2 1 26 26 H 1.08998 * 109.47388 * 59.99154 * 3 2 1 27 27 H 1.08997 * 109.47278 * 300.00536 * 4 2 1 28 28 H 1.09001 * 109.47226 * 60.00508 * 4 2 1 29 29 H 1.08998 * 109.47119 * 179.97438 * 4 2 1 30 30 H 1.08997 * 113.61028 * 254.52849 * 8 6 5 31 31 H 1.09000 * 113.61529 * 25.42988 * 8 6 5 32 32 H 0.96996 * 120.00397 * 334.99617 * 11 9 8 33 33 H 1.08004 * 122.70940 * 180.22503 * 14 13 12 34 34 H 1.08999 * 109.46977 * 305.02100 * 16 15 14 35 35 H 0.96696 * 113.99961 * 59.99378 * 17 16 15 36 36 H 1.48503 * 109.99910 * 180.02562 * 18 16 15 37 37 H 1.48498 * 109.99996 * 301.31452 * 18 16 15 38 38 H 1.09002 * 113.61557 * 270.88569 * 20 9 8 39 39 H 1.09004 * 113.61501 * 139.97990 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 8 2.0063 -0.6736 1.1669 6 6 1.5846 -2.0354 1.2646 7 1 1.2512 -2.4458 0.3115 8 6 2.5836 -2.9377 2.0081 9 6 1.3666 -3.6117 2.6634 10 1 1.5128 -3.8468 3.7176 11 7 0.8383 -4.7425 1.8962 12 6 0.1294 -5.7453 2.5391 13 7 -0.1170 -5.7822 3.8118 14 6 -0.8126 -6.8141 4.2556 15 6 -1.1611 -7.6933 3.3160 16 6 -1.9484 -8.9592 3.5372 17 8 -3.2682 -8.6291 3.9745 18 14 -2.0442 -9.9175 1.9424 19 16 -0.5417 -7.1172 1.7706 20 6 0.6075 -2.2961 2.4232 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5139 -0.8901 23 1 -0.3634 -1.0276 0.0005 24 1 3.1300 1.4426 -0.0005 25 1 1.6766 1.9564 -0.8900 26 1 1.6766 1.9564 0.8899 27 1 1.6766 -1.7490 -1.2491 28 1 1.6768 -0.2076 -2.1392 29 1 3.1300 -0.7209 -1.2494 30 1 3.1476 -3.5992 1.3505 31 1 3.2170 -2.3996 2.7133 32 1 0.9846 -4.7896 0.9385 33 1 -1.0740 -6.9375 5.2963 34 1 -1.4551 -9.5658 4.2966 35 1 -3.7670 -8.0888 3.3465 36 1 -2.8186 -11.1679 2.1470 37 1 -2.6862 -9.0895 0.8901 38 1 0.7007 -1.5825 3.2419 39 1 -0.4238 -2.4396 2.1007 There are 50 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 50 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_12113342_15704118.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:55:59 Heat of formation + Delta-G solvation = 3.783251 kcal Electronic energy + Delta-G solvation = -20488.307393 eV Core-core repulsion = 17332.693873 eV Total energy + Delta-G solvation = -3155.613520 eV No. of doubly occupied orbitals = 50 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 285.119 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.28461 -40.49574 -38.77388 -37.91102 -35.16355 -33.52733 -31.18315 -28.48484 -28.37399 -26.84501 -26.61697 -25.66175 -24.26039 -21.69234 -21.13210 -20.14634 -19.60300 -18.22276 -17.74471 -17.15222 -16.66415 -16.40073 -16.31866 -15.97083 -15.84471 -15.47663 -15.01414 -14.66791 -14.55169 -14.17706 -13.92894 -13.63285 -13.40303 -13.13529 -12.99536 -12.85011 -12.79664 -12.69196 -12.60870 -12.48018 -12.03926 -11.88075 -11.62839 -11.29511 -11.12162 -10.90665 -10.39416 -10.31148 -10.23693 -8.78002 -5.02611 -0.09041 -0.01429 0.64355 1.25257 1.53974 1.88197 1.94666 2.10096 2.71891 3.37959 3.42945 3.52656 3.61386 3.81280 3.88179 3.89837 3.94789 3.97886 4.09369 4.33807 4.56981 4.59845 4.63300 4.67814 4.71729 4.74715 4.77104 4.80937 4.88041 4.89778 4.93530 4.96772 5.04261 5.13131 5.20983 5.31424 5.34403 5.81000 6.10666 6.39829 6.43528 6.98503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.099 3.901 3 C -0.140 4.140 4 C -0.177 4.177 5 O -0.379 6.379 6 C 0.064 3.936 7 H 0.101 0.899 8 C -0.135 4.135 9 C 0.141 3.859 10 H 0.096 0.904 11 N -0.668 5.668 12 C 0.316 3.684 13 N -0.577 5.577 14 C 0.104 3.896 15 C -0.304 4.304 16 C -0.023 4.023 17 O -0.543 6.543 18 Si 0.723 3.277 19 S 0.119 5.881 20 C -0.164 4.164 21 H 0.054 0.946 22 H 0.075 0.925 23 H 0.058 0.942 24 H 0.060 0.940 25 H 0.083 0.917 26 H 0.056 0.944 27 H 0.065 0.935 28 H 0.076 0.924 29 H 0.061 0.939 30 H 0.091 0.909 31 H 0.102 0.898 32 H 0.424 0.576 33 H 0.179 0.821 34 H 0.136 0.864 35 H 0.386 0.614 36 H -0.275 1.275 37 H -0.265 1.265 38 H 0.090 0.910 39 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.152 -0.016 -4.992 5.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.060 3.940 3 C -0.197 4.197 4 C -0.234 4.234 5 O -0.299 6.299 6 C 0.006 3.994 7 H 0.118 0.882 8 C -0.173 4.173 9 C 0.033 3.967 10 H 0.115 0.885 11 N -0.308 5.308 12 C -0.054 4.054 13 N -0.303 5.303 14 C -0.046 4.046 15 C -0.427 4.427 16 C -0.136 4.136 17 O -0.351 6.351 18 Si 0.626 3.374 19 S 0.368 5.632 20 C -0.204 4.204 21 H 0.074 0.926 22 H 0.094 0.906 23 H 0.078 0.922 24 H 0.079 0.921 25 H 0.102 0.898 26 H 0.075 0.925 27 H 0.084 0.916 28 H 0.095 0.905 29 H 0.080 0.920 30 H 0.110 0.890 31 H 0.121 0.879 32 H 0.264 0.736 33 H 0.196 0.804 34 H 0.153 0.847 35 H 0.235 0.765 36 H -0.201 1.201 37 H -0.190 1.190 38 H 0.109 0.891 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.169 -0.407 -5.566 5.987 hybrid contribution -1.328 0.725 0.793 1.708 sum 0.841 0.318 -4.773 4.857 Atomic orbital electron populations 1.22445 0.95238 1.02520 1.02908 1.21669 0.93445 0.93453 0.85447 1.21799 1.01778 0.93273 1.02893 1.22447 1.02075 1.01131 0.97731 1.88026 1.74078 1.24053 1.43704 1.23789 0.95389 0.82564 0.97664 0.88159 1.23590 0.96415 0.97090 1.00235 1.21556 0.94363 0.84232 0.96572 0.88544 1.43708 1.56966 1.20129 1.09981 1.23895 0.95735 0.93958 0.91819 1.66472 1.24054 1.28372 1.11435 1.21468 0.93860 0.87958 1.01363 1.25644 1.16033 1.06726 0.94317 1.24296 0.82504 0.95165 1.11627 1.86593 1.25855 1.74186 1.48461 0.94367 0.90495 0.78374 0.74170 1.83864 1.52312 1.16502 1.10485 1.23991 0.99111 0.97304 1.00010 0.92645 0.90607 0.92249 0.92122 0.89822 0.92507 0.91650 0.90510 0.91966 0.89030 0.87913 0.73638 0.80421 0.84686 0.76506 1.20106 1.19016 0.89147 0.91616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 0.28 8.38 71.98 0.60 0.88 16 2 C 0.10 -0.06 1.11 -10.79 -0.01 -0.07 16 3 C -0.14 0.13 8.84 71.98 0.64 0.77 16 4 C -0.18 0.59 8.38 71.98 0.60 1.19 16 5 O -0.38 -0.95 10.00 -148.98 -1.49 -2.44 16 6 C 0.06 -0.11 2.69 31.12 0.08 -0.03 16 7 H 0.10 -0.46 5.55 -2.39 -0.01 -0.47 16 8 C -0.13 0.39 7.66 31.12 0.24 0.63 16 9 C 0.14 -0.09 4.44 45.52 0.20 0.11 16 10 H 0.10 0.30 7.66 -2.39 -0.02 0.28 16 11 N -0.67 1.24 5.42 -327.90 -1.78 -0.54 16 12 C 0.32 0.77 8.09 179.32 1.45 2.22 16 13 N -0.58 -3.80 9.83 -202.02 -1.99 -5.79 16 14 C 0.10 0.45 11.24 83.54 0.94 1.39 16 15 C -0.30 -0.40 5.73 24.57 0.14 -0.26 16 16 C -0.02 0.01 2.99 71.24 0.21 0.22 16 17 O -0.54 -1.33 12.88 -148.98 -1.92 -3.25 16 18 Si 0.72 -1.16 31.07 68.60 2.13 0.97 16 19 S 0.12 -0.09 20.59 -56.49 -1.16 -1.25 16 20 C -0.16 -0.02 7.71 31.12 0.24 0.22 16 21 H 0.05 0.03 8.14 -2.39 -0.02 0.01 16 22 H 0.07 -0.27 8.14 -2.38 -0.02 -0.28 16 23 H 0.06 -0.12 7.02 -2.39 -0.02 -0.14 16 24 H 0.06 -0.01 8.14 -2.39 -0.02 -0.03 16 25 H 0.08 -0.31 8.14 -2.38 -0.02 -0.33 16 26 H 0.06 0.03 8.14 -2.39 -0.02 0.01 16 27 H 0.06 -0.32 6.25 -2.39 -0.01 -0.33 16 28 H 0.08 -0.37 8.14 -2.39 -0.02 -0.39 16 29 H 0.06 -0.14 8.14 -2.39 -0.02 -0.16 16 30 H 0.09 -0.49 8.14 -2.39 -0.02 -0.51 16 31 H 0.10 -0.17 8.14 -2.39 -0.02 -0.18 16 32 H 0.42 -2.88 8.83 -92.71 -0.82 -3.69 16 33 H 0.18 0.45 8.06 -2.91 -0.02 0.42 16 34 H 0.14 -0.35 7.96 -2.39 -0.02 -0.37 16 35 H 0.39 -1.04 8.70 -74.06 -0.64 -1.68 16 36 H -0.28 -1.29 7.11 99.48 0.71 -0.58 16 37 H -0.26 -0.50 7.11 99.48 0.71 0.21 16 38 H 0.09 0.19 8.14 -2.39 -0.02 0.17 16 39 H 0.07 0.09 8.14 -2.39 -0.02 0.07 16 Total: 0.00 -11.78 330.84 -1.23 -13.02 By element: Atomic # 1 Polarization: -7.63 SS G_CDS: -0.37 Total: -8.00 kcal Atomic # 6 Polarization: 1.94 SS G_CDS: 5.34 Total: 7.28 kcal Atomic # 7 Polarization: -2.57 SS G_CDS: -3.76 Total: -6.33 kcal Atomic # 8 Polarization: -2.27 SS G_CDS: -3.41 Total: -5.68 kcal Atomic # 14 Polarization: -1.16 SS G_CDS: 2.13 Total: 0.97 kcal Atomic # 16 Polarization: -0.09 SS G_CDS: -1.16 Total: -1.25 kcal Total: -11.78 -1.23 -13.02 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12113342_15704118.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.801 kcal (2) G-P(sol) polarization free energy of solvation -11.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.017 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds