Wall clock time and date at job start Mon Mar 8 2021 04:56:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.33332 * 125.94845 * 2 1 4 4 C 1.50698 * 122.71049 * 359.97438 * 3 2 1 5 5 O 1.42901 * 109.47004 * 30.00022 * 4 3 2 6 6 Si 1.86298 * 109.47327 * 149.99737 * 4 3 2 7 7 N 1.32122 * 114.57717 * 179.75306 * 3 2 1 8 8 C 1.29683 * 116.86660 * 0.46977 * 7 3 2 9 9 N 1.38606 * 124.94924 * 179.81324 * 8 7 3 10 10 C 1.46506 * 119.99884 * 179.72091 * 9 8 7 11 11 H 1.09002 * 112.85053 * 23.81021 * 10 9 8 12 12 C 1.53781 * 113.61132 * 155.00082 * 10 9 8 13 13 C 1.53778 * 87.07854 * 139.98151 * 12 10 9 14 14 H 1.09009 * 113.61498 * 219.93479 * 13 12 10 15 15 O 1.42904 * 113.61544 * 89.12059 * 13 12 10 16 16 C 1.42898 * 114.00382 * 149.99754 * 15 13 12 17 17 C 1.53006 * 109.46904 * 59.99959 * 16 15 13 18 18 C 1.52996 * 109.46983 * 179.97438 * 16 15 13 19 19 C 1.53001 * 109.47230 * 299.99830 * 16 15 13 20 20 C 1.53777 * 87.08544 * 334.56772 * 13 12 10 21 21 S 1.70974 * 110.10199 * 359.55370 * 8 7 3 22 22 H 1.09001 * 109.46880 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47252 * 299.97555 * 1 2 3 24 24 H 1.08999 * 109.46954 * 59.97970 * 1 2 3 25 25 H 1.09002 * 109.47357 * 269.99991 * 4 3 2 26 26 H 0.96701 * 113.99811 * 180.02562 * 5 4 3 27 27 H 1.48499 * 110.00063 * 178.67812 * 6 4 3 28 28 H 1.48499 * 110.00048 * 300.00468 * 6 4 3 29 29 H 0.96995 * 120.00007 * 359.97438 * 9 8 7 30 30 H 1.08997 * 113.61529 * 254.52896 * 12 10 9 31 31 H 1.09002 * 113.61788 * 25.43621 * 12 10 9 32 32 H 1.08994 * 109.47150 * 60.00065 * 17 16 15 33 33 H 1.08997 * 109.46680 * 180.02562 * 17 16 15 34 34 H 1.09004 * 109.47118 * 299.99773 * 17 16 15 35 35 H 1.09001 * 109.47137 * 60.00104 * 18 16 15 36 36 H 1.08999 * 109.47100 * 180.02562 * 18 16 15 37 37 H 1.09006 * 109.47438 * 299.99775 * 18 16 15 38 38 H 1.08998 * 109.46736 * 59.99926 * 19 16 15 39 39 H 1.08999 * 109.46785 * 179.97438 * 19 16 15 40 40 H 1.09001 * 109.46999 * 299.99963 * 19 16 15 41 41 H 1.09000 * 113.61314 * 270.88866 * 20 13 12 42 42 H 1.09002 * 113.61704 * 139.97929 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2897 1.0794 0.0000 4 6 1.7413 2.4830 -0.0006 5 8 0.4810 2.5022 0.6726 6 14 2.9318 3.6153 0.8778 7 7 3.5850 0.8189 0.0052 8 6 3.9315 -0.4308 0.0001 9 7 5.2385 -0.8924 0.0005 10 6 5.5066 -2.3327 0.0005 11 1 4.6808 -2.9170 -0.4053 12 6 6.8750 -2.7045 -0.5945 13 6 6.9927 -3.7468 0.5300 14 1 7.9934 -3.8179 0.9565 15 8 6.4430 -5.0211 0.1892 16 6 7.0836 -6.1224 0.8362 17 6 6.9564 -5.9669 2.3530 18 6 6.4164 -7.4284 0.4002 19 6 8.5635 -6.1510 0.4487 20 6 6.0355 -2.8608 1.3445 21 16 2.5413 -1.4260 0.0000 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5135 0.8902 24 1 -0.3633 0.5141 -0.8898 25 1 1.6095 2.8212 -1.0284 26 1 0.0684 3.3760 0.7101 27 1 2.4176 5.0082 0.8563 28 1 3.1201 3.1649 2.2803 29 1 5.9755 -0.2619 0.0045 30 1 6.8136 -3.1421 -1.5909 31 1 7.6124 -1.9045 -0.5272 32 1 5.9022 -5.9466 2.6290 33 1 7.4455 -6.8067 2.8465 34 1 7.4315 -5.0364 2.6640 35 1 6.5066 -7.5393 -0.6804 36 1 6.9048 -8.2684 0.8941 37 1 5.3622 -7.4078 0.6766 38 1 9.0384 -5.2206 0.7597 39 1 9.0521 -6.9908 0.9427 40 1 8.6540 -6.2618 -0.6318 41 1 6.5432 -2.1036 1.9418 42 1 5.2962 -3.4247 1.9134 There are 53 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 53 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_12113342_15704122.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:56:02 Heat of formation + Delta-G solvation = -2.678157 kcal Electronic energy + Delta-G solvation = -22446.998353 eV Core-core repulsion = 19135.567027 eV Total energy + Delta-G solvation = -3311.431326 eV No. of doubly occupied orbitals = 53 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 299.134 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.26197 -40.71364 -38.78104 -37.65093 -35.38507 -33.61149 -32.28259 -29.23867 -28.52349 -28.46922 -26.79593 -25.79457 -25.12746 -23.86482 -21.95456 -20.66544 -19.78036 -19.20491 -18.35720 -17.65673 -17.19074 -16.81422 -16.39447 -16.16512 -15.91297 -15.67307 -15.27765 -14.93100 -14.51185 -14.36665 -13.99374 -13.92544 -13.75267 -13.56699 -13.51783 -13.21796 -13.17349 -13.00146 -12.96816 -12.76284 -12.74914 -12.67122 -12.14764 -12.05514 -11.84577 -11.52445 -11.24310 -10.88291 -10.53420 -10.48890 -10.35470 -9.85934 -8.46434 -4.63387 0.17105 0.31575 0.92368 1.43234 1.80008 1.96595 2.05382 2.21628 2.43642 3.13794 3.33702 3.44470 3.65419 3.79348 3.86067 3.87379 3.97303 4.00941 4.11722 4.28742 4.46941 4.49010 4.49773 4.52383 4.53274 4.62580 4.67294 4.70100 4.79811 4.82562 4.86059 4.92064 4.95367 4.97782 5.03654 5.08732 5.22426 5.25299 5.26609 5.46151 5.73016 6.26166 6.38353 6.51784 7.05417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C -0.232 4.232 3 C 0.103 3.897 4 C -0.041 4.041 5 O -0.535 6.535 6 Si 0.718 3.282 7 N -0.540 5.540 8 C 0.320 3.680 9 N -0.684 5.684 10 C 0.135 3.865 11 H 0.112 0.888 12 C -0.143 4.143 13 C 0.066 3.934 14 H 0.087 0.913 15 O -0.354 6.354 16 C 0.107 3.893 17 C -0.178 4.178 18 C -0.140 4.140 19 C -0.180 4.180 20 C -0.174 4.174 21 S 0.100 5.900 22 H 0.056 0.944 23 H 0.086 0.914 24 H 0.070 0.930 25 H 0.081 0.919 26 H 0.381 0.619 27 H -0.265 1.265 28 H -0.263 1.263 29 H 0.412 0.588 30 H 0.088 0.912 31 H 0.101 0.899 32 H 0.065 0.935 33 H 0.067 0.933 34 H 0.059 0.941 35 H 0.064 0.936 36 H 0.072 0.928 37 H 0.064 0.936 38 H 0.060 0.940 39 H 0.068 0.932 40 H 0.066 0.934 41 H 0.096 0.904 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.175 -2.068 -0.796 3.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.355 4.355 3 C -0.027 4.027 4 C -0.153 4.153 5 O -0.342 6.342 6 Si 0.619 3.381 7 N -0.267 5.267 8 C -0.051 4.051 9 N -0.324 5.324 10 C 0.029 3.971 11 H 0.129 0.871 12 C -0.181 4.181 13 C 0.007 3.993 14 H 0.104 0.896 15 O -0.273 6.273 16 C 0.068 3.932 17 C -0.235 4.235 18 C -0.197 4.197 19 C -0.237 4.237 20 C -0.213 4.213 21 S 0.349 5.651 22 H 0.075 0.925 23 H 0.105 0.895 24 H 0.089 0.911 25 H 0.099 0.901 26 H 0.230 0.770 27 H -0.191 1.191 28 H -0.188 1.188 29 H 0.251 0.749 30 H 0.106 0.894 31 H 0.119 0.881 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.078 0.922 35 H 0.083 0.917 36 H 0.091 0.909 37 H 0.083 0.917 38 H 0.079 0.921 39 H 0.087 0.913 40 H 0.085 0.915 41 H 0.114 0.886 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 3.535 -3.058 -0.197 4.678 hybrid contribution -0.833 1.333 0.269 1.595 sum 2.701 -1.725 0.072 3.206 Atomic orbital electron populations 1.20075 0.86585 1.01321 1.03621 1.25122 1.01357 0.92737 1.16256 1.18716 0.86589 0.94910 1.02440 1.23993 0.92064 0.97843 1.01440 1.86546 1.33223 1.34993 1.79413 0.93686 0.87421 0.74935 0.82050 1.65602 1.16789 1.16629 1.27693 1.23232 0.92009 0.91199 0.98646 1.44012 1.01618 1.06743 1.80019 1.22646 0.98187 0.78944 0.97282 0.87054 1.23608 0.96301 0.98077 1.00134 1.22743 0.96956 0.83576 0.96058 0.89553 1.87973 1.58371 1.12856 1.68083 1.21579 0.92300 0.87349 0.91955 1.22483 1.02999 1.02571 0.95457 1.21777 1.01309 0.94216 1.02366 1.22474 0.95832 1.02649 1.02745 1.24124 1.00244 0.99521 0.97453 1.84016 0.96507 1.10467 1.74115 0.92507 0.89536 0.91094 0.90128 0.77050 1.19116 1.18776 0.74909 0.89382 0.88090 0.91619 0.91420 0.92186 0.91658 0.90927 0.91664 0.92117 0.91272 0.91521 0.88572 0.90018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.12 8.91 36.01 0.32 0.20 16 2 C -0.23 -0.88 6.50 -36.02 -0.23 -1.12 16 3 C 0.10 0.43 5.96 -84.18 -0.50 -0.08 16 4 C -0.04 -0.08 2.93 36.00 0.11 0.02 16 5 O -0.53 -0.77 9.80 -35.23 -0.35 -1.11 16 6 Si 0.72 1.33 32.08 -169.99 -5.45 -4.12 16 7 N -0.54 -2.21 8.94 -11.36 -0.10 -2.31 16 8 C 0.32 0.92 8.24 -87.69 -0.72 0.19 16 9 N -0.68 -0.13 5.51 -54.99 -0.30 -0.43 16 10 C 0.14 -0.10 4.16 -67.11 -0.28 -0.38 16 11 H 0.11 0.03 7.06 -51.93 -0.37 -0.34 16 12 C -0.14 0.29 7.66 -25.92 -0.20 0.09 16 13 C 0.07 -0.09 2.88 -25.92 -0.07 -0.17 16 14 H 0.09 -0.20 5.54 -51.92 -0.29 -0.49 16 15 O -0.35 -0.12 9.92 -35.23 -0.35 -0.46 16 16 C 0.11 -0.09 1.11 -90.62 -0.10 -0.19 16 17 C -0.18 0.24 8.38 37.16 0.31 0.55 16 18 C -0.14 0.15 8.84 37.16 0.33 0.48 16 19 C -0.18 0.29 8.38 37.16 0.31 0.60 16 20 C -0.17 0.22 7.71 -25.92 -0.20 0.02 16 21 S 0.10 0.26 21.69 -107.50 -2.33 -2.07 16 22 H 0.06 0.07 8.14 -51.93 -0.42 -0.35 16 23 H 0.09 0.23 6.74 -51.93 -0.35 -0.12 16 24 H 0.07 0.11 8.14 -51.93 -0.42 -0.31 16 25 H 0.08 0.03 7.96 -51.93 -0.41 -0.38 16 26 H 0.38 -1.01 8.74 45.56 0.40 -0.61 16 27 H -0.27 -0.72 7.11 56.52 0.40 -0.32 16 28 H -0.26 -1.53 7.11 56.52 0.40 -1.13 16 29 H 0.41 -0.47 8.85 -40.82 -0.36 -0.83 16 30 H 0.09 -0.13 8.14 -51.93 -0.42 -0.55 16 31 H 0.10 -0.36 8.12 -51.93 -0.42 -0.78 16 32 H 0.06 -0.05 8.14 -51.93 -0.42 -0.47 16 33 H 0.07 -0.13 8.14 -51.93 -0.42 -0.55 16 34 H 0.06 -0.09 7.02 -51.93 -0.36 -0.46 16 35 H 0.06 -0.05 8.14 -51.93 -0.42 -0.47 16 36 H 0.07 -0.15 8.14 -51.93 -0.42 -0.58 16 37 H 0.06 -0.04 8.14 -51.93 -0.42 -0.47 16 38 H 0.06 -0.12 6.24 -51.93 -0.32 -0.45 16 39 H 0.07 -0.15 8.14 -51.93 -0.42 -0.57 16 40 H 0.07 -0.08 8.14 -51.93 -0.42 -0.50 16 41 H 0.10 -0.18 8.14 -51.93 -0.42 -0.60 16 42 H 0.08 -0.02 8.14 -51.93 -0.42 -0.45 16 LS Contribution 347.80 15.07 5.24 5.24 Total: 0.00 -5.47 347.80 -11.34 -16.81 By element: Atomic # 1 Polarization: -5.01 SS G_CDS: -6.76 Total: -11.77 kcal Atomic # 6 Polarization: 1.16 SS G_CDS: -0.93 Total: 0.23 kcal Atomic # 7 Polarization: -2.34 SS G_CDS: -0.40 Total: -2.74 kcal Atomic # 8 Polarization: -0.88 SS G_CDS: -0.69 Total: -1.58 kcal Atomic # 14 Polarization: 1.33 SS G_CDS: -5.45 Total: -4.12 kcal Atomic # 16 Polarization: 0.26 SS G_CDS: -2.33 Total: -2.07 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -5.47 -11.34 -16.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12113342_15704122.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.133 kcal (2) G-P(sol) polarization free energy of solvation -5.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds