Wall clock time and date at job start Mon Mar 8 2021 04:56:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.33332 * 125.94845 * 2 1 4 4 C 1.50698 * 122.71049 * 359.97438 * 3 2 1 5 5 O 1.42901 * 109.47004 * 30.00022 * 4 3 2 6 6 Si 1.86298 * 109.47327 * 149.99737 * 4 3 2 7 7 N 1.32122 * 114.57717 * 179.75306 * 3 2 1 8 8 C 1.29683 * 116.86660 * 0.46977 * 7 3 2 9 9 N 1.38606 * 124.94924 * 179.81324 * 8 7 3 10 10 C 1.46506 * 119.99884 * 179.72091 * 9 8 7 11 11 H 1.09002 * 112.85053 * 23.81021 * 10 9 8 12 12 C 1.53781 * 113.61132 * 155.00082 * 10 9 8 13 13 C 1.53778 * 87.07854 * 139.98151 * 12 10 9 14 14 H 1.09009 * 113.61498 * 219.93479 * 13 12 10 15 15 O 1.42904 * 113.61544 * 89.12059 * 13 12 10 16 16 C 1.42898 * 114.00382 * 149.99754 * 15 13 12 17 17 C 1.53006 * 109.46904 * 59.99959 * 16 15 13 18 18 C 1.52996 * 109.46983 * 179.97438 * 16 15 13 19 19 C 1.53001 * 109.47230 * 299.99830 * 16 15 13 20 20 C 1.53777 * 87.08544 * 334.56772 * 13 12 10 21 21 S 1.70974 * 110.10199 * 359.55370 * 8 7 3 22 22 H 1.09001 * 109.46880 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47252 * 299.97555 * 1 2 3 24 24 H 1.08999 * 109.46954 * 59.97970 * 1 2 3 25 25 H 1.09002 * 109.47357 * 269.99991 * 4 3 2 26 26 H 0.96701 * 113.99811 * 180.02562 * 5 4 3 27 27 H 1.48499 * 110.00063 * 178.67812 * 6 4 3 28 28 H 1.48499 * 110.00048 * 300.00468 * 6 4 3 29 29 H 0.96995 * 120.00007 * 359.97438 * 9 8 7 30 30 H 1.08997 * 113.61529 * 254.52896 * 12 10 9 31 31 H 1.09002 * 113.61788 * 25.43621 * 12 10 9 32 32 H 1.08994 * 109.47150 * 60.00065 * 17 16 15 33 33 H 1.08997 * 109.46680 * 180.02562 * 17 16 15 34 34 H 1.09004 * 109.47118 * 299.99773 * 17 16 15 35 35 H 1.09001 * 109.47137 * 60.00104 * 18 16 15 36 36 H 1.08999 * 109.47100 * 180.02562 * 18 16 15 37 37 H 1.09006 * 109.47438 * 299.99775 * 18 16 15 38 38 H 1.08998 * 109.46736 * 59.99926 * 19 16 15 39 39 H 1.08999 * 109.46785 * 179.97438 * 19 16 15 40 40 H 1.09001 * 109.46999 * 299.99963 * 19 16 15 41 41 H 1.09000 * 113.61314 * 270.88866 * 20 13 12 42 42 H 1.09002 * 113.61704 * 139.97929 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2897 1.0794 0.0000 4 6 1.7413 2.4830 -0.0006 5 8 0.4810 2.5022 0.6726 6 14 2.9318 3.6153 0.8778 7 7 3.5850 0.8189 0.0052 8 6 3.9315 -0.4308 0.0001 9 7 5.2385 -0.8924 0.0005 10 6 5.5066 -2.3327 0.0005 11 1 4.6808 -2.9170 -0.4053 12 6 6.8750 -2.7045 -0.5945 13 6 6.9927 -3.7468 0.5300 14 1 7.9934 -3.8179 0.9565 15 8 6.4430 -5.0211 0.1892 16 6 7.0836 -6.1224 0.8362 17 6 6.9564 -5.9669 2.3530 18 6 6.4164 -7.4284 0.4002 19 6 8.5635 -6.1510 0.4487 20 6 6.0355 -2.8608 1.3445 21 16 2.5413 -1.4260 0.0000 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5135 0.8902 24 1 -0.3633 0.5141 -0.8898 25 1 1.6095 2.8212 -1.0284 26 1 0.0684 3.3760 0.7101 27 1 2.4176 5.0082 0.8563 28 1 3.1201 3.1649 2.2803 29 1 5.9755 -0.2619 0.0045 30 1 6.8136 -3.1421 -1.5909 31 1 7.6124 -1.9045 -0.5272 32 1 5.9022 -5.9466 2.6290 33 1 7.4455 -6.8067 2.8465 34 1 7.4315 -5.0364 2.6640 35 1 6.5066 -7.5393 -0.6804 36 1 6.9048 -8.2684 0.8941 37 1 5.3622 -7.4078 0.6766 38 1 9.0384 -5.2206 0.7597 39 1 9.0521 -6.9908 0.9427 40 1 8.6540 -6.2618 -0.6318 41 1 6.5432 -2.1036 1.9418 42 1 5.2962 -3.4247 1.9134 There are 53 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 53 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_12113342_15704122.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:56:01 Heat of formation + Delta-G solvation = 2.340434 kcal Electronic energy + Delta-G solvation = -22446.780731 eV Core-core repulsion = 19135.567027 eV Total energy + Delta-G solvation = -3311.213704 eV No. of doubly occupied orbitals = 53 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 299.134 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.25232 -40.82393 -38.74506 -37.73510 -35.42383 -33.59020 -32.40035 -29.36796 -28.42199 -28.34632 -26.68280 -25.87991 -25.22420 -23.96550 -21.89622 -20.69580 -19.82523 -19.30636 -18.41314 -17.64884 -17.31129 -16.75358 -16.44724 -16.24410 -15.88039 -15.75801 -15.41649 -14.87541 -14.43949 -14.33695 -14.17093 -14.05415 -13.82361 -13.52417 -13.48057 -13.31429 -13.14038 -13.05963 -12.86024 -12.68586 -12.65325 -12.62561 -12.38502 -11.97267 -11.83935 -11.64390 -11.17360 -10.93454 -10.70777 -10.48859 -10.44540 -10.03318 -8.60709 -4.79496 -0.03377 0.14076 0.72796 1.26659 1.60250 1.83406 1.88524 2.03312 2.55597 3.09027 3.42554 3.53816 3.74713 3.86774 3.90740 3.95824 3.97674 4.09650 4.13166 4.25531 4.32846 4.39945 4.60954 4.64551 4.69177 4.71389 4.78203 4.81140 4.82065 4.87524 4.91619 4.93394 4.96069 5.01628 5.04924 5.12771 5.21268 5.30812 5.34333 5.36450 5.67075 6.35995 6.36948 6.62665 6.88087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 C -0.254 4.254 3 C 0.086 3.914 4 C -0.043 4.043 5 O -0.546 6.546 6 Si 0.777 3.223 7 N -0.557 5.557 8 C 0.314 3.686 9 N -0.673 5.673 10 C 0.130 3.870 11 H 0.099 0.901 12 C -0.133 4.133 13 C 0.065 3.935 14 H 0.099 0.901 15 O -0.372 6.372 16 C 0.102 3.898 17 C -0.175 4.175 18 C -0.141 4.141 19 C -0.177 4.177 20 C -0.169 4.169 21 S 0.104 5.896 22 H 0.062 0.938 23 H 0.080 0.920 24 H 0.076 0.924 25 H 0.101 0.899 26 H 0.398 0.602 27 H -0.272 1.272 28 H -0.321 1.321 29 H 0.420 0.580 30 H 0.083 0.917 31 H 0.121 0.879 32 H 0.056 0.944 33 H 0.074 0.926 34 H 0.063 0.937 35 H 0.060 0.940 36 H 0.083 0.917 37 H 0.057 0.943 38 H 0.066 0.934 39 H 0.075 0.925 40 H 0.060 0.940 41 H 0.105 0.895 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.948 -1.953 -1.157 4.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.377 4.377 3 C -0.043 4.043 4 C -0.155 4.155 5 O -0.356 6.356 6 Si 0.683 3.317 7 N -0.285 5.285 8 C -0.058 4.058 9 N -0.313 5.313 10 C 0.025 3.975 11 H 0.117 0.883 12 C -0.171 4.171 13 C 0.006 3.994 14 H 0.117 0.883 15 O -0.292 6.292 16 C 0.063 3.937 17 C -0.233 4.233 18 C -0.198 4.198 19 C -0.235 4.235 20 C -0.209 4.209 21 S 0.352 5.648 22 H 0.081 0.919 23 H 0.099 0.901 24 H 0.095 0.905 25 H 0.119 0.881 26 H 0.249 0.751 27 H -0.199 1.199 28 H -0.250 1.250 29 H 0.260 0.740 30 H 0.102 0.898 31 H 0.139 0.861 32 H 0.075 0.925 33 H 0.093 0.907 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.102 0.898 37 H 0.076 0.924 38 H 0.085 0.915 39 H 0.094 0.906 40 H 0.080 0.920 41 H 0.123 0.877 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 4.316 -2.936 -0.585 5.252 hybrid contribution -1.061 1.255 0.446 1.703 sum 3.255 -1.680 -0.138 3.666 Atomic orbital electron populations 1.20049 0.85776 1.01703 1.03553 1.25399 1.02205 0.93125 1.16927 1.19126 0.86832 0.95995 1.02369 1.24056 0.92151 0.96703 1.02581 1.86513 1.32976 1.36679 1.79430 0.93013 0.86555 0.73683 0.78459 1.65656 1.16947 1.17124 1.28784 1.23505 0.92950 0.91139 0.98191 1.44112 1.00919 1.07310 1.78997 1.22716 0.98601 0.78169 0.98009 0.88297 1.23609 0.95662 0.98248 0.99590 1.22811 0.97263 0.83046 0.96235 0.88326 1.87955 1.59091 1.13671 1.68469 1.21679 0.92770 0.87066 0.92152 1.22460 1.02523 1.03085 0.95205 1.21802 1.01024 0.94776 1.02173 1.22451 0.95241 1.03293 1.02466 1.24100 1.00072 0.99622 0.97086 1.83927 0.96415 1.10176 1.74242 0.91903 0.90130 0.90534 0.88131 0.75058 1.19884 1.24953 0.74040 0.89849 0.86089 0.92532 0.90670 0.91833 0.92139 0.89790 0.92429 0.91506 0.90568 0.92040 0.87651 0.91207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.24 8.91 71.24 0.63 0.39 16 2 C -0.25 -2.10 6.50 24.58 0.16 -1.94 16 3 C 0.09 0.76 5.96 41.40 0.25 1.00 16 4 C -0.04 -0.17 2.93 71.24 0.21 0.04 16 5 O -0.55 -1.56 9.80 -148.98 -1.46 -3.02 16 6 Si 0.78 3.26 32.08 68.60 2.20 5.46 16 7 N -0.56 -4.86 8.94 -189.86 -1.70 -6.56 16 8 C 0.31 1.97 8.24 179.32 1.48 3.45 16 9 N -0.67 -0.30 5.51 -327.88 -1.81 -2.11 16 10 C 0.13 -0.18 4.16 45.52 0.19 0.01 16 11 H 0.10 0.14 7.06 -2.39 -0.02 0.12 16 12 C -0.13 0.63 7.66 31.12 0.24 0.87 16 13 C 0.07 -0.21 2.88 31.12 0.09 -0.12 16 14 H 0.10 -0.57 5.54 -2.38 -0.01 -0.58 16 15 O -0.37 -0.34 9.92 -148.98 -1.48 -1.82 16 16 C 0.10 -0.17 1.11 -10.79 -0.01 -0.18 16 17 C -0.18 0.49 8.38 71.98 0.60 1.09 16 18 C -0.14 0.25 8.84 71.98 0.64 0.89 16 19 C -0.18 0.68 8.38 71.98 0.60 1.28 16 20 C -0.17 0.42 7.71 31.12 0.24 0.66 16 21 S 0.10 0.63 21.69 -56.49 -1.23 -0.59 16 22 H 0.06 0.19 8.14 -2.39 -0.02 0.17 16 23 H 0.08 0.47 6.74 -2.39 -0.02 0.45 16 24 H 0.08 0.25 8.14 -2.39 -0.02 0.23 16 25 H 0.10 -0.02 7.96 -2.39 -0.02 -0.04 16 26 H 0.40 -2.29 8.74 -74.06 -0.65 -2.94 16 27 H -0.27 -1.39 7.11 99.48 0.71 -0.68 16 28 H -0.32 -4.50 7.11 99.48 0.71 -3.79 16 29 H 0.42 -1.12 8.85 -92.71 -0.82 -1.94 16 30 H 0.08 -0.27 8.14 -2.39 -0.02 -0.29 16 31 H 0.12 -1.05 8.12 -2.39 -0.02 -1.07 16 32 H 0.06 -0.05 8.14 -2.39 -0.02 -0.07 16 33 H 0.07 -0.33 8.14 -2.39 -0.02 -0.35 16 34 H 0.06 -0.23 7.02 -2.38 -0.02 -0.24 16 35 H 0.06 -0.05 8.14 -2.39 -0.02 -0.07 16 36 H 0.08 -0.37 8.14 -2.39 -0.02 -0.39 16 37 H 0.06 -0.02 8.14 -2.38 -0.02 -0.04 16 38 H 0.07 -0.34 6.24 -2.39 -0.01 -0.36 16 39 H 0.08 -0.40 8.14 -2.39 -0.02 -0.42 16 40 H 0.06 -0.16 8.14 -2.39 -0.02 -0.18 16 41 H 0.11 -0.45 8.14 -2.39 -0.02 -0.47 16 42 H 0.07 0.01 8.14 -2.39 -0.02 0.00 16 Total: 0.00 -13.59 347.80 -0.55 -14.15 By element: Atomic # 1 Polarization: -12.54 SS G_CDS: -0.40 Total: -12.95 kcal Atomic # 6 Polarization: 2.12 SS G_CDS: 5.32 Total: 7.44 kcal Atomic # 7 Polarization: -5.16 SS G_CDS: -3.50 Total: -8.66 kcal Atomic # 8 Polarization: -1.90 SS G_CDS: -2.94 Total: -4.84 kcal Atomic # 14 Polarization: 3.26 SS G_CDS: 2.20 Total: 5.46 kcal Atomic # 16 Polarization: 0.63 SS G_CDS: -1.23 Total: -0.59 kcal Total: -13.59 -0.55 -14.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12113342_15704122.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.486 kcal (2) G-P(sol) polarization free energy of solvation -13.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.146 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds