Wall clock time and date at job start Mon Mar 8 2021 05:18:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34230 * 116.99836 * 2 1 4 4 O 1.20833 * 119.99930 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00262 * 180.27336 * 3 2 1 6 6 H 1.09003 * 112.84637 * 50.05272 * 5 3 2 7 7 C 1.53780 * 113.61928 * 181.25129 * 5 3 2 8 8 C 1.53777 * 87.08398 * 139.97851 * 7 5 3 9 9 H 1.08996 * 113.61657 * 219.93710 * 8 7 5 10 10 N 1.46502 * 113.61486 * 89.11212 * 8 7 5 11 11 C 1.38405 * 119.99836 * 154.99609 * 10 8 7 12 12 N 1.32491 * 119.21677 * 359.73980 * 11 10 8 13 13 C 1.32281 * 120.73581 * 179.71403 * 12 11 10 14 14 C 1.38605 * 119.19872 * 0.54346 * 13 12 11 15 15 C 1.50699 * 120.71831 * 179.74996 * 14 13 12 16 16 O 1.42904 * 109.46911 * 119.97981 * 15 14 13 17 17 Si 1.86301 * 109.47394 * 359.97438 * 15 14 13 18 18 C 1.38600 * 118.55716 * 359.73370 * 14 13 12 19 19 N 1.32273 * 119.19823 * 359.97438 * 18 14 13 20 20 C 1.53779 * 113.61502 * 278.86034 * 5 3 2 21 21 H 1.08998 * 109.47630 * 300.00638 * 1 2 3 22 22 H 1.09004 * 109.46770 * 60.01042 * 1 2 3 23 23 H 1.09001 * 109.46882 * 180.02562 * 1 2 3 24 24 H 1.09002 * 113.61269 * 254.52825 * 7 5 3 25 25 H 1.09004 * 113.61317 * 25.34506 * 7 5 3 26 26 H 0.97004 * 120.00182 * 335.00997 * 10 8 7 27 27 H 1.08004 * 120.39803 * 180.25444 * 13 12 11 28 28 H 1.08996 * 109.47329 * 239.97777 * 15 14 13 29 29 H 0.96697 * 113.99906 * 179.97438 * 16 15 14 30 30 H 1.48495 * 110.00152 * 298.68008 * 17 15 14 31 31 H 1.48501 * 110.00065 * 59.99810 * 17 15 14 32 32 H 1.07998 * 120.39642 * 180.02562 * 18 14 13 33 33 H 1.09009 * 113.61146 * 334.56360 * 20 5 3 34 34 H 1.08998 * 113.61914 * 105.46309 * 20 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5663 1.2750 -0.0062 6 1 4.0194 0.6548 -0.7796 7 6 4.1078 2.7139 0.0254 8 6 5.1864 2.2031 0.9952 9 1 5.4068 2.8959 1.8073 10 7 6.3921 1.7099 0.3251 11 6 7.6037 1.7074 0.9941 12 7 7.6563 2.1594 2.2384 13 6 8.7972 2.1655 2.9079 14 6 9.9473 1.7023 2.2882 15 6 11.2664 1.6991 3.0169 16 8 11.7623 0.3614 3.0984 17 14 11.0284 2.3791 4.7350 18 6 9.8576 1.2419 0.9840 19 7 8.6844 1.2576 0.3734 20 6 4.1987 1.0875 1.3829 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5137 -0.8901 23 1 -0.3633 -1.0277 0.0005 24 1 4.5058 3.0518 -0.9315 25 1 3.4191 3.4299 0.4739 26 1 6.3414 1.3852 -0.5876 27 1 8.8330 2.5314 3.9234 28 1 11.9814 2.3194 2.4766 29 1 12.6107 0.2836 3.5557 30 1 10.5433 3.7807 4.6639 31 1 10.0555 1.5422 5.4822 32 1 10.7350 0.8740 0.4729 33 1 3.5355 1.3578 2.2047 34 1 4.6699 0.1143 1.5205 There are 48 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 48 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_12121850_12175864.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:18:16 Heat of formation + Delta-G solvation = -18.552064 kcal Electronic energy + Delta-G solvation = -19598.651979 eV Core-core repulsion = 16307.196294 eV Total energy + Delta-G solvation = -3291.455685 eV No. of doubly occupied orbitals = 48 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.34523 -41.87328 -39.96489 -37.89320 -37.52705 -35.53876 -34.87657 -32.29333 -29.45450 -27.37266 -26.93792 -26.30452 -25.85008 -23.27725 -22.52797 -20.59868 -19.89620 -18.88158 -18.57802 -18.19686 -17.87351 -17.47579 -16.66009 -16.50181 -16.32037 -15.86921 -15.42154 -15.10240 -15.02462 -14.75264 -14.38989 -14.03468 -13.90540 -13.56126 -13.22333 -13.11575 -12.90029 -12.35699 -12.14142 -12.02933 -11.93940 -11.88663 -11.76703 -11.48080 -11.26773 -10.59578 -10.03265 -9.23792 -4.93521 -0.12875 -0.00313 1.00305 1.33099 1.60349 1.67575 1.68544 1.98387 2.61854 2.92023 3.16280 3.26535 3.41123 3.46850 3.53296 3.63434 3.73048 3.88405 3.99876 4.12096 4.21230 4.24089 4.42274 4.54575 4.56494 4.58689 4.62542 4.64879 4.77241 4.81889 4.93691 5.19094 5.28236 5.62815 5.87311 6.26541 6.59000 6.97579 7.11829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.364 6.364 3 C 0.470 3.530 4 O -0.536 6.536 5 C -0.107 4.107 6 H 0.145 0.855 7 C -0.117 4.117 8 C 0.141 3.859 9 H 0.107 0.893 10 N -0.671 5.671 11 C 0.554 3.446 12 N -0.578 5.578 13 C 0.175 3.825 14 C -0.251 4.251 15 C -0.053 4.053 16 O -0.565 6.565 17 Si 0.768 3.232 18 C 0.220 3.780 19 N -0.580 5.580 20 C -0.128 4.128 21 H 0.061 0.939 22 H 0.062 0.938 23 H 0.128 0.872 24 H 0.097 0.903 25 H 0.105 0.895 26 H 0.423 0.577 27 H 0.161 0.839 28 H 0.103 0.897 29 H 0.406 0.594 30 H -0.286 1.286 31 H -0.297 1.297 32 H 0.195 0.805 33 H 0.098 0.902 34 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.314 -0.973 1.269 5.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.280 6.280 3 C 0.314 3.686 4 O -0.426 6.426 5 C -0.125 4.125 6 H 0.163 0.837 7 C -0.155 4.155 8 C 0.035 3.965 9 H 0.125 0.875 10 N -0.308 5.308 11 C 0.198 3.802 12 N -0.300 5.300 13 C 0.008 3.992 14 C -0.259 4.259 15 C -0.164 4.164 16 O -0.375 6.375 17 Si 0.675 3.325 18 C 0.052 3.948 19 N -0.302 5.302 20 C -0.167 4.167 21 H 0.080 0.920 22 H 0.081 0.919 23 H 0.146 0.854 24 H 0.116 0.884 25 H 0.124 0.876 26 H 0.263 0.737 27 H 0.178 0.822 28 H 0.121 0.879 29 H 0.258 0.742 30 H -0.213 1.213 31 H -0.225 1.225 32 H 0.212 0.788 33 H 0.117 0.883 34 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 2.909 -0.404 1.107 3.139 hybrid contribution -0.069 -0.133 -0.369 0.398 sum 2.840 -0.538 0.738 2.984 Atomic orbital electron populations 1.23533 0.75016 1.05601 1.02502 1.86526 1.24819 1.33225 1.83475 1.24056 0.92540 0.81014 0.70971 1.90671 1.67858 1.37364 1.46699 1.22760 0.85902 1.01490 1.02397 0.83738 1.23312 0.96172 0.94518 1.01503 1.21750 0.82506 0.96039 0.96241 0.87490 1.43782 1.02571 1.67840 1.16566 1.19549 0.87254 0.87557 0.85887 1.67871 1.29510 1.23860 1.08769 1.22842 0.87088 0.90846 0.98377 1.21094 0.97252 1.09295 0.98215 1.24396 0.93095 0.89340 1.09607 1.86429 1.43894 1.25030 1.82165 0.94143 0.86815 0.75502 0.76082 1.23276 0.94453 0.86727 0.90352 1.68023 0.99578 1.23371 1.39248 1.23426 0.97551 1.00949 0.94748 0.92020 0.91930 0.85413 0.88430 0.87627 0.73747 0.82203 0.87888 0.74223 1.21289 1.22499 0.78790 0.88313 0.89717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.00 10.56 113.37 1.20 1.19 16 2 O -0.36 -1.47 10.57 -51.41 -0.54 -2.01 16 3 C 0.47 2.28 7.48 71.23 0.53 2.82 16 4 O -0.54 -5.78 15.66 21.94 0.34 -5.43 16 5 C -0.11 0.12 4.13 -11.02 -0.05 0.08 16 6 H 0.14 -0.73 8.14 -2.39 -0.02 -0.75 16 7 C -0.12 0.17 7.14 31.12 0.22 0.39 16 8 C 0.14 0.01 4.34 45.58 0.20 0.21 16 9 H 0.11 0.28 7.36 -2.39 -0.02 0.26 16 10 N -0.67 -1.14 5.41 -327.66 -1.77 -2.91 16 11 C 0.55 4.01 8.42 261.49 2.20 6.21 16 12 N -0.58 -4.96 9.13 -197.98 -1.81 -6.77 16 13 C 0.18 1.11 9.92 84.71 0.84 1.95 16 14 C -0.25 -0.81 5.43 -19.69 -0.11 -0.92 16 15 C -0.05 0.20 2.84 71.24 0.20 0.40 16 16 O -0.56 2.10 12.76 -148.98 -1.90 0.20 16 17 Si 0.77 -3.41 29.87 68.60 2.05 -1.36 16 18 C 0.22 0.82 10.92 84.71 0.93 1.75 16 19 N -0.58 -4.12 10.46 -198.00 -2.07 -6.19 16 20 C -0.13 0.09 7.44 31.18 0.23 0.32 16 21 H 0.06 0.03 8.13 -2.39 -0.02 0.01 16 22 H 0.06 0.02 8.13 -2.38 -0.02 0.00 16 23 H 0.13 -0.71 8.14 -2.39 -0.02 -0.72 16 24 H 0.10 -0.34 8.14 -2.39 -0.02 -0.36 16 25 H 0.11 0.09 7.45 -2.38 -0.02 0.07 16 26 H 0.42 -0.70 8.82 -92.71 -0.82 -1.52 16 27 H 0.16 0.67 5.04 -2.91 -0.01 0.65 16 28 H 0.10 -0.90 7.96 -2.39 -0.02 -0.92 16 29 H 0.41 -5.74 8.74 -74.06 -0.65 -6.39 16 30 H -0.29 -0.28 7.11 99.48 0.71 0.43 16 31 H -0.30 -1.06 7.11 99.48 0.71 -0.36 16 32 H 0.20 -0.35 8.06 -2.91 -0.02 -0.37 16 33 H 0.10 -0.05 8.09 -2.38 -0.02 -0.07 16 34 H 0.08 0.00 8.14 -2.39 -0.02 -0.02 16 Total: 0.00 -20.53 297.06 0.42 -20.11 By element: Atomic # 1 Polarization: -9.77 SS G_CDS: -0.28 Total: -10.05 kcal Atomic # 6 Polarization: 8.01 SS G_CDS: 6.40 Total: 14.41 kcal Atomic # 7 Polarization: -10.22 SS G_CDS: -5.65 Total: -15.87 kcal Atomic # 8 Polarization: -5.14 SS G_CDS: -2.10 Total: -7.24 kcal Atomic # 14 Polarization: -3.41 SS G_CDS: 2.05 Total: -1.36 kcal Total: -20.53 0.42 -20.11 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12121850_12175864.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.561 kcal (2) G-P(sol) polarization free energy of solvation -20.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds