Wall clock time and date at job start Mon Mar 8 2021 05:18:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34231 * 116.99983 * 2 1 4 4 O 1.20822 * 120.00142 * 0.02562 * 3 2 1 5 5 C 1.50698 * 120.00053 * 180.02562 * 3 2 1 6 6 H 1.08997 * 112.85409 * 48.80300 * 5 3 2 7 7 C 1.53778 * 113.61647 * 180.02562 * 5 3 2 8 8 C 1.53784 * 87.08423 * 139.98102 * 7 5 3 9 9 H 1.08997 * 113.61192 * 220.02377 * 8 7 5 10 10 N 1.46495 * 113.61750 * 89.20040 * 8 7 5 11 11 C 1.39002 * 120.00357 * 155.00123 * 10 8 7 12 12 N 1.32397 * 119.70935 * 180.02562 * 11 10 8 13 13 C 1.31966 * 121.62461 * 179.97438 * 12 11 10 14 14 C 1.38020 * 120.85663 * 359.97438 * 13 12 11 15 15 C 1.50704 * 120.33639 * 180.02562 * 14 13 12 16 16 O 1.42898 * 109.46961 * 244.99955 * 15 14 13 17 17 Si 1.86300 * 109.46841 * 4.99855 * 15 14 13 18 18 C 1.38887 * 119.32956 * 0.02562 * 14 13 12 19 19 C 1.38300 * 118.50371 * 359.73541 * 18 14 13 20 20 C 1.53783 * 87.08032 * 334.56783 * 8 7 5 21 21 H 1.09002 * 109.47379 * 59.99613 * 1 2 3 22 22 H 1.09001 * 109.46782 * 299.99696 * 1 2 3 23 23 H 1.09004 * 109.47085 * 179.97438 * 1 2 3 24 24 H 1.08999 * 113.61704 * 254.52629 * 7 5 3 25 25 H 1.09006 * 113.61615 * 25.34841 * 7 5 3 26 26 H 0.97003 * 119.99671 * 335.00187 * 10 8 7 27 27 H 1.07996 * 119.57278 * 179.97438 * 13 12 11 28 28 H 1.08995 * 109.46883 * 125.00077 * 15 14 13 29 29 H 0.96699 * 113.99931 * 60.00278 * 16 15 14 30 30 H 1.48504 * 109.99602 * 179.97438 * 17 15 14 31 31 H 1.48494 * 110.00172 * 301.31735 * 17 15 14 32 32 H 1.08002 * 120.74946 * 180.02562 * 18 14 13 33 33 H 1.08003 * 120.44924 * 180.28829 * 19 18 14 34 34 H 1.09001 * 113.61357 * 270.88594 * 20 8 7 35 35 H 1.08996 * 113.61413 * 139.98285 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 4.0234 0.6366 -0.7567 7 6 4.1077 2.7142 0.0001 8 6 5.1815 2.2262 0.9870 9 1 5.3968 2.9372 1.7846 10 7 6.3913 1.7195 0.3346 11 6 7.6045 1.7331 1.0130 12 7 8.6944 1.2742 0.4176 13 6 9.8654 1.2697 1.0261 14 6 9.9957 1.7476 2.3143 15 6 11.3388 1.7375 2.9978 16 8 11.2975 0.8487 4.1159 17 14 12.6424 1.1644 1.7966 18 6 8.8764 2.2380 2.9744 19 6 7.6638 2.2345 2.3095 20 6 4.1917 1.1226 1.3961 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 4.5105 3.0297 -0.9623 25 1 3.4169 3.4405 0.4285 26 1 6.3458 1.3745 -0.5709 27 1 10.7331 0.8872 0.5093 28 1 11.5789 2.7435 3.3419 29 1 11.0888 -0.0664 3.8834 30 1 13.9718 1.1506 2.4583 31 1 12.3098 -0.1933 1.2956 32 1 8.9522 2.6178 3.9826 33 1 6.7742 2.6127 2.7914 34 1 3.5244 1.4135 2.2074 35 1 4.6622 0.1533 1.5606 There are 48 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 48 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_12121850_13915762.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:18:19 Heat of formation + Delta-G solvation = -37.796420 kcal Electronic energy + Delta-G solvation = -19446.172129 eV Core-core repulsion = 16219.307858 eV Total energy + Delta-G solvation = -3226.864271 eV No. of doubly occupied orbitals = 48 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 265.115 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.05427 -41.34072 -39.90442 -37.99582 -37.38720 -35.26197 -33.40534 -31.29792 -29.41120 -27.30896 -27.02082 -26.02614 -24.82578 -23.03972 -22.22245 -20.44873 -19.40075 -18.55601 -18.43660 -17.77537 -17.49410 -17.39811 -16.50877 -16.38898 -16.18136 -15.75804 -15.35913 -15.02758 -14.86552 -14.35517 -14.22846 -14.05289 -13.86422 -13.59418 -13.31993 -13.16958 -12.87596 -12.48053 -12.08576 -11.98619 -11.84507 -11.81074 -11.41356 -11.14220 -10.77941 -10.53959 -10.38276 -8.79251 -4.95535 0.21209 0.39731 1.11686 1.29795 1.59024 1.66924 1.90527 1.97475 2.79213 3.08985 3.17699 3.39452 3.47267 3.55090 3.62642 3.75566 3.89289 3.97720 4.03442 4.12991 4.20571 4.24067 4.30823 4.43606 4.50665 4.55415 4.57008 4.66129 4.70936 4.73309 4.89164 4.99033 5.29271 5.35241 5.48099 5.93076 6.41395 6.44659 6.69388 7.11467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.358 6.358 3 C 0.470 3.530 4 O -0.504 6.504 5 C -0.111 4.111 6 H 0.126 0.874 7 C -0.125 4.125 8 C 0.132 3.868 9 H 0.109 0.891 10 N -0.706 5.706 11 C 0.410 3.590 12 N -0.538 5.538 13 C 0.155 3.845 14 C -0.231 4.231 15 C -0.060 4.060 16 O -0.532 6.532 17 Si 0.680 3.320 18 C -0.005 4.005 19 C -0.237 4.237 20 C -0.138 4.138 21 H 0.064 0.936 22 H 0.064 0.936 23 H 0.103 0.897 24 H 0.087 0.913 25 H 0.114 0.886 26 H 0.407 0.593 27 H 0.156 0.844 28 H 0.117 0.883 29 H 0.375 0.625 30 H -0.256 1.256 31 H -0.258 1.258 32 H 0.136 0.864 33 H 0.135 0.865 34 H 0.099 0.901 35 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.855 0.142 -0.602 1.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.274 6.274 3 C 0.312 3.688 4 O -0.391 6.391 5 C -0.131 4.131 6 H 0.143 0.857 7 C -0.163 4.163 8 C 0.025 3.975 9 H 0.126 0.874 10 N -0.338 5.338 11 C 0.174 3.826 12 N -0.255 5.255 13 C -0.003 4.003 14 C -0.236 4.236 15 C -0.170 4.170 16 O -0.338 6.338 17 Si 0.581 3.419 18 C -0.031 4.031 19 C -0.262 4.262 20 C -0.177 4.177 21 H 0.083 0.917 22 H 0.083 0.917 23 H 0.121 0.879 24 H 0.106 0.894 25 H 0.132 0.868 26 H 0.244 0.756 27 H 0.173 0.827 28 H 0.134 0.866 29 H 0.223 0.777 30 H -0.181 1.181 31 H -0.183 1.183 32 H 0.154 0.846 33 H 0.153 0.847 34 H 0.117 0.883 35 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -0.550 0.139 -1.205 1.332 hybrid contribution -0.877 -0.756 1.039 1.556 sum -1.427 -0.617 -0.165 1.563 Atomic orbital electron populations 1.23328 0.75926 1.04027 1.02725 1.86524 1.23748 1.33347 1.83763 1.23568 0.91676 0.81430 0.72094 1.90686 1.66983 1.36419 1.45053 1.22613 0.87606 1.01060 1.01774 0.85659 1.23378 0.96793 0.94838 1.01270 1.21793 0.83453 0.95850 0.96439 0.87369 1.44136 1.03656 1.68296 1.17674 1.18346 0.86021 0.89667 0.88531 1.67142 0.98373 1.21984 1.37964 1.22274 0.93893 0.93091 0.91026 1.20943 0.97400 1.08229 0.97068 1.24763 0.99168 0.98177 0.94927 1.86598 1.92649 1.22320 1.32228 0.95098 0.77789 0.85429 0.83574 1.21216 0.90786 0.92046 0.99050 1.21513 0.99859 1.09333 0.95470 1.23508 0.97974 1.01465 0.94751 0.91720 0.91731 0.87852 0.89398 0.86821 0.75604 0.82748 0.86557 0.77724 1.18073 1.18316 0.84599 0.84693 0.88272 0.89297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.03 10.56 101.05 1.07 1.04 16 2 O -0.36 -0.41 10.57 -39.26 -0.41 -0.83 16 3 C 0.47 0.58 7.48 36.00 0.27 0.85 16 4 O -0.50 -2.01 15.65 -18.75 -0.29 -2.31 16 5 C -0.11 0.20 4.14 -90.96 -0.38 -0.18 16 6 H 0.13 -0.37 8.14 -51.93 -0.42 -0.80 16 7 C -0.12 0.30 7.15 -25.92 -0.19 0.11 16 8 C 0.13 -0.36 4.11 -67.12 -0.28 -0.64 16 9 H 0.11 -0.37 6.09 -51.93 -0.32 -0.69 16 10 N -0.71 0.94 5.44 -53.14 -0.29 0.65 16 11 C 0.41 0.32 7.65 -155.02 -1.19 -0.87 16 12 N -0.54 -1.10 10.39 -12.44 -0.13 -1.23 16 13 C 0.15 0.11 9.84 -17.57 -0.17 -0.06 16 14 C -0.23 -0.02 5.36 -104.46 -0.56 -0.58 16 15 C -0.06 0.03 2.82 36.01 0.10 0.13 16 16 O -0.53 -0.50 12.84 -35.23 -0.45 -0.95 16 17 Si 0.68 -0.78 29.91 -169.99 -5.08 -5.87 16 18 C -0.01 0.00 9.84 -39.32 -0.39 -0.39 16 19 C -0.24 0.04 9.29 -39.23 -0.36 -0.33 16 20 C -0.14 0.35 7.43 -25.91 -0.19 0.16 16 21 H 0.06 -0.04 8.13 -51.93 -0.42 -0.46 16 22 H 0.06 -0.05 8.13 -51.93 -0.42 -0.47 16 23 H 0.10 -0.31 8.14 -51.93 -0.42 -0.73 16 24 H 0.09 -0.24 8.14 -51.93 -0.42 -0.66 16 25 H 0.11 -0.17 7.43 -51.93 -0.39 -0.56 16 26 H 0.41 -0.74 8.83 -40.82 -0.36 -1.10 16 27 H 0.16 -0.15 4.85 -52.49 -0.25 -0.41 16 28 H 0.12 -0.15 7.96 -51.93 -0.41 -0.57 16 29 H 0.38 -0.64 8.70 45.56 0.40 -0.24 16 30 H -0.26 -0.56 7.11 56.52 0.40 -0.16 16 31 H -0.26 -0.19 7.01 56.52 0.40 0.21 16 32 H 0.14 -0.15 8.06 -52.49 -0.42 -0.58 16 33 H 0.14 -0.28 6.03 -52.48 -0.32 -0.59 16 34 H 0.10 -0.27 8.09 -51.93 -0.42 -0.69 16 35 H 0.09 -0.19 8.14 -51.93 -0.42 -0.61 16 LS Contribution 299.45 15.07 4.51 4.51 Total: 0.00 -7.22 299.45 -8.64 -15.87 By element: Atomic # 1 Polarization: -4.89 SS G_CDS: -4.23 Total: -9.12 kcal Atomic # 6 Polarization: 1.53 SS G_CDS: -2.26 Total: -0.74 kcal Atomic # 7 Polarization: -0.16 SS G_CDS: -0.42 Total: -0.57 kcal Atomic # 8 Polarization: -2.92 SS G_CDS: -1.16 Total: -4.08 kcal Atomic # 14 Polarization: -0.78 SS G_CDS: -5.08 Total: -5.87 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -7.22 -8.64 -15.87 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12121850_13915762.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.929 kcal (2) G-P(sol) polarization free energy of solvation -7.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds