Wall clock time and date at job start Mon Mar 8 2021 05:18:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34231 * 116.99983 * 2 1 4 4 O 1.20822 * 120.00142 * 0.02562 * 3 2 1 5 5 C 1.50698 * 120.00053 * 180.02562 * 3 2 1 6 6 H 1.08997 * 112.85409 * 48.80300 * 5 3 2 7 7 C 1.53778 * 113.61647 * 180.02562 * 5 3 2 8 8 C 1.53784 * 87.08423 * 139.98102 * 7 5 3 9 9 H 1.08997 * 113.61192 * 220.02377 * 8 7 5 10 10 N 1.46495 * 113.61750 * 89.20040 * 8 7 5 11 11 C 1.39002 * 120.00357 * 155.00123 * 10 8 7 12 12 N 1.32397 * 119.70935 * 180.02562 * 11 10 8 13 13 C 1.31966 * 121.62461 * 179.97438 * 12 11 10 14 14 C 1.38020 * 120.85663 * 359.97438 * 13 12 11 15 15 C 1.50704 * 120.33639 * 180.02562 * 14 13 12 16 16 O 1.42898 * 109.46961 * 244.99955 * 15 14 13 17 17 Si 1.86300 * 109.46841 * 4.99855 * 15 14 13 18 18 C 1.38887 * 119.32956 * 0.02562 * 14 13 12 19 19 C 1.38300 * 118.50371 * 359.73541 * 18 14 13 20 20 C 1.53783 * 87.08032 * 334.56783 * 8 7 5 21 21 H 1.09002 * 109.47379 * 59.99613 * 1 2 3 22 22 H 1.09001 * 109.46782 * 299.99696 * 1 2 3 23 23 H 1.09004 * 109.47085 * 179.97438 * 1 2 3 24 24 H 1.08999 * 113.61704 * 254.52629 * 7 5 3 25 25 H 1.09006 * 113.61615 * 25.34841 * 7 5 3 26 26 H 0.97003 * 119.99671 * 335.00187 * 10 8 7 27 27 H 1.07996 * 119.57278 * 179.97438 * 13 12 11 28 28 H 1.08995 * 109.46883 * 125.00077 * 15 14 13 29 29 H 0.96699 * 113.99931 * 60.00278 * 16 15 14 30 30 H 1.48504 * 109.99602 * 179.97438 * 17 15 14 31 31 H 1.48494 * 110.00172 * 301.31735 * 17 15 14 32 32 H 1.08002 * 120.74946 * 180.02562 * 18 14 13 33 33 H 1.08003 * 120.44924 * 180.28829 * 19 18 14 34 34 H 1.09001 * 113.61357 * 270.88594 * 20 8 7 35 35 H 1.08996 * 113.61413 * 139.98285 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 4.0234 0.6366 -0.7567 7 6 4.1077 2.7142 0.0001 8 6 5.1815 2.2262 0.9870 9 1 5.3968 2.9372 1.7846 10 7 6.3913 1.7195 0.3346 11 6 7.6045 1.7331 1.0130 12 7 8.6944 1.2742 0.4176 13 6 9.8654 1.2697 1.0261 14 6 9.9957 1.7476 2.3143 15 6 11.3388 1.7375 2.9978 16 8 11.2975 0.8487 4.1159 17 14 12.6424 1.1644 1.7966 18 6 8.8764 2.2380 2.9744 19 6 7.6638 2.2345 2.3095 20 6 4.1917 1.1226 1.3961 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 4.5105 3.0297 -0.9623 25 1 3.4169 3.4405 0.4285 26 1 6.3458 1.3745 -0.5709 27 1 10.7331 0.8872 0.5093 28 1 11.5789 2.7435 3.3419 29 1 11.0888 -0.0664 3.8834 30 1 13.9718 1.1506 2.4583 31 1 12.3098 -0.1933 1.2956 32 1 8.9522 2.6178 3.9826 33 1 6.7742 2.6127 2.7914 34 1 3.5244 1.4135 2.2074 35 1 4.6622 0.1533 1.5606 There are 48 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 48 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_12121850_13915762.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:18:18 Heat of formation + Delta-G solvation = -36.042494 kcal Electronic energy + Delta-G solvation = -19446.096073 eV Core-core repulsion = 16219.307858 eV Total energy + Delta-G solvation = -3226.788216 eV No. of doubly occupied orbitals = 48 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 265.115 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.03703 -41.33606 -39.83157 -37.99520 -37.48728 -35.19638 -33.38311 -31.24761 -29.36697 -27.22857 -26.84078 -25.97079 -24.78917 -23.01046 -22.20100 -20.33756 -19.35201 -18.54865 -18.45125 -17.78584 -17.45711 -17.40643 -16.46599 -16.31522 -16.11897 -15.69732 -15.29748 -14.93599 -14.84209 -14.38236 -14.22449 -13.99997 -13.75254 -13.48952 -13.30658 -13.10303 -12.82824 -12.45632 -12.04537 -11.94514 -11.88170 -11.74073 -11.39160 -11.06782 -10.75846 -10.52269 -10.37613 -8.71922 -4.89214 0.23909 0.42203 1.04913 1.35562 1.61686 1.71559 1.97853 2.02305 2.82025 3.24097 3.33299 3.47818 3.60746 3.66680 3.74301 3.80568 3.98111 4.08370 4.09716 4.23623 4.26143 4.35233 4.44918 4.61398 4.64556 4.66904 4.68995 4.78884 4.84695 4.91624 5.02074 5.06874 5.32406 5.35311 5.55526 6.03182 6.51870 6.54016 6.63211 7.15201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.366 6.366 3 C 0.468 3.532 4 O -0.537 6.537 5 C -0.111 4.111 6 H 0.139 0.861 7 C -0.120 4.120 8 C 0.138 3.862 9 H 0.119 0.881 10 N -0.701 5.701 11 C 0.398 3.602 12 N -0.563 5.563 13 C 0.144 3.856 14 C -0.232 4.232 15 C -0.063 4.063 16 O -0.549 6.549 17 Si 0.756 3.244 18 C -0.012 4.012 19 C -0.239 4.239 20 C -0.131 4.131 21 H 0.060 0.940 22 H 0.062 0.938 23 H 0.127 0.873 24 H 0.092 0.908 25 H 0.106 0.894 26 H 0.409 0.591 27 H 0.165 0.835 28 H 0.126 0.874 29 H 0.385 0.615 30 H -0.302 1.302 31 H -0.283 1.283 32 H 0.146 0.854 33 H 0.153 0.847 34 H 0.102 0.898 35 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.977 0.212 -0.429 1.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.282 6.282 3 C 0.313 3.687 4 O -0.427 6.427 5 C -0.130 4.130 6 H 0.157 0.843 7 C -0.158 4.158 8 C 0.032 3.968 9 H 0.137 0.863 10 N -0.333 5.333 11 C 0.162 3.838 12 N -0.280 5.280 13 C -0.013 4.013 14 C -0.237 4.237 15 C -0.173 4.173 16 O -0.357 6.357 17 Si 0.662 3.338 18 C -0.038 4.038 19 C -0.264 4.264 20 C -0.170 4.170 21 H 0.079 0.921 22 H 0.081 0.919 23 H 0.145 0.855 24 H 0.111 0.889 25 H 0.124 0.876 26 H 0.246 0.754 27 H 0.182 0.818 28 H 0.143 0.857 29 H 0.234 0.766 30 H -0.230 1.230 31 H -0.210 1.210 32 H 0.164 0.836 33 H 0.171 0.829 34 H 0.120 0.880 35 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -0.697 0.205 -1.040 1.269 hybrid contribution -0.863 -0.820 0.994 1.551 sum -1.560 -0.615 -0.046 1.678 Atomic orbital electron populations 1.23518 0.75127 1.05530 1.02466 1.86528 1.24733 1.33399 1.83503 1.24154 0.92709 0.80936 0.70923 1.90667 1.67922 1.37359 1.46750 1.22775 0.85628 1.01812 1.02772 0.84337 1.23322 0.96590 0.94317 1.01592 1.21790 0.82806 0.95827 0.96422 0.86288 1.44180 1.03427 1.67966 1.17715 1.18576 0.86281 0.89816 0.89090 1.67136 0.99072 1.22993 1.38827 1.22472 0.94036 0.93341 0.91455 1.20962 0.97676 1.08169 0.96885 1.24893 0.99101 0.98550 0.94741 1.86567 1.92743 1.23252 1.33163 0.94198 0.74220 0.83456 0.81956 1.21427 0.90858 0.91942 0.99566 1.21722 1.00526 1.08937 0.95179 1.23479 0.97764 1.01458 0.94284 0.92081 0.91935 0.85525 0.88942 0.87572 0.75415 0.81823 0.85660 0.76640 1.23012 1.20952 0.83590 0.82939 0.87961 0.89397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.03 10.56 113.37 1.20 1.16 16 2 O -0.37 -0.91 10.57 -51.42 -0.54 -1.46 16 3 C 0.47 1.34 7.48 71.24 0.53 1.88 16 4 O -0.54 -4.76 15.65 21.98 0.34 -4.42 16 5 C -0.11 0.42 4.14 -11.01 -0.05 0.38 16 6 H 0.14 -0.91 8.14 -2.39 -0.02 -0.93 16 7 C -0.12 0.60 7.15 31.12 0.22 0.83 16 8 C 0.14 -0.87 4.11 45.52 0.19 -0.68 16 9 H 0.12 -0.97 6.09 -2.39 -0.01 -0.99 16 10 N -0.70 2.28 5.44 -322.05 -1.75 0.53 16 11 C 0.40 0.45 7.65 133.06 1.02 1.46 16 12 N -0.56 -2.29 10.39 -193.27 -2.01 -4.29 16 13 C 0.14 0.20 9.84 84.62 0.83 1.03 16 14 C -0.23 0.04 5.36 -19.76 -0.11 -0.07 16 15 C -0.06 0.09 2.82 71.24 0.20 0.29 16 16 O -0.55 -0.95 12.84 -148.98 -1.91 -2.87 16 17 Si 0.76 -1.52 29.91 68.60 2.05 0.53 16 18 C -0.01 0.01 9.84 22.44 0.22 0.23 16 19 C -0.24 0.27 9.29 22.50 0.21 0.48 16 20 C -0.13 0.75 7.43 31.12 0.23 0.98 16 21 H 0.06 -0.04 8.13 -2.39 -0.02 -0.06 16 22 H 0.06 -0.06 8.13 -2.39 -0.02 -0.08 16 23 H 0.13 -0.83 8.14 -2.38 -0.02 -0.85 16 24 H 0.09 -0.53 8.14 -2.39 -0.02 -0.55 16 25 H 0.11 -0.31 7.43 -2.38 -0.02 -0.33 16 26 H 0.41 -1.66 8.83 -92.71 -0.82 -2.48 16 27 H 0.17 -0.31 4.85 -2.91 -0.01 -0.33 16 28 H 0.13 -0.41 7.96 -2.39 -0.02 -0.43 16 29 H 0.38 -1.28 8.70 -74.06 -0.64 -1.93 16 30 H -0.30 -1.73 7.11 99.48 0.71 -1.02 16 31 H -0.28 -0.54 7.01 99.48 0.70 0.15 16 32 H 0.15 -0.46 8.06 -2.91 -0.02 -0.49 16 33 H 0.15 -0.84 6.03 -2.91 -0.02 -0.86 16 34 H 0.10 -0.62 8.09 -2.39 -0.02 -0.64 16 35 H 0.09 -0.44 8.14 -2.39 -0.02 -0.46 16 Total: 0.00 -16.83 299.45 0.58 -16.26 By element: Atomic # 1 Polarization: -11.96 SS G_CDS: -0.30 Total: -12.26 kcal Atomic # 6 Polarization: 3.27 SS G_CDS: 4.70 Total: 7.97 kcal Atomic # 7 Polarization: 0.00 SS G_CDS: -3.76 Total: -3.76 kcal Atomic # 8 Polarization: -6.63 SS G_CDS: -2.11 Total: -8.74 kcal Atomic # 14 Polarization: -1.52 SS G_CDS: 2.05 Total: 0.53 kcal Total: -16.83 0.58 -16.26 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12121850_13915762.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.786 kcal (2) G-P(sol) polarization free energy of solvation -16.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds