Wall clock time and date at job start Mon Mar 8 2021 05:18:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34223 * 117.00267 * 2 1 4 4 O 1.20826 * 119.99889 * 359.97438 * 3 2 1 5 5 C 1.50706 * 120.00493 * 180.02562 * 3 2 1 6 6 H 1.09000 * 112.90124 * 311.24849 * 5 3 2 7 7 C 1.53775 * 113.61410 * 82.49869 * 5 3 2 8 8 C 1.53775 * 87.08097 * 139.98293 * 7 5 3 9 9 H 1.08996 * 113.69638 * 220.00692 * 8 7 5 10 10 N 1.46506 * 113.61531 * 89.11408 * 8 7 5 11 11 C 1.38606 * 119.99773 * 107.50464 * 10 8 7 12 12 N 1.29691 * 124.94727 * 179.72595 * 11 10 8 13 13 C 1.32120 * 116.86564 * 179.81484 * 12 11 10 14 14 C 1.50698 * 122.71117 * 180.22570 * 13 12 11 15 15 O 1.42898 * 109.47079 * 150.26597 * 14 13 12 16 16 Si 1.86297 * 109.47169 * 30.26269 * 14 13 12 17 17 C 1.33333 * 114.58072 * 0.46759 * 13 12 11 18 18 C 1.50691 * 125.95182 * 179.75794 * 17 13 12 19 19 S 1.70969 * 124.95300 * 0.02562 * 11 10 8 20 20 C 1.53777 * 113.61467 * 179.97438 * 5 3 2 21 21 H 1.09000 * 109.46815 * 180.02562 * 1 2 3 22 22 H 1.08992 * 109.47307 * 300.00405 * 1 2 3 23 23 H 1.09007 * 109.46820 * 60.00507 * 1 2 3 24 24 H 1.09003 * 113.61490 * 25.43740 * 7 5 3 25 25 H 1.09002 * 113.61432 * 254.53550 * 7 5 3 26 26 H 0.97000 * 120.00117 * 287.50478 * 10 8 7 27 27 H 1.08998 * 109.47192 * 270.26297 * 14 13 12 28 28 H 0.96702 * 113.99849 * 299.99210 * 15 14 13 29 29 H 1.48502 * 109.99872 * 180.02562 * 16 14 13 30 30 H 1.48499 * 109.99946 * 301.32071 * 16 14 13 31 31 H 1.09010 * 109.47107 * 180.02562 * 18 17 13 32 32 H 1.09003 * 109.47098 * 300.01659 * 18 17 13 33 33 H 1.08997 * 109.47717 * 60.02209 * 18 17 13 34 34 H 1.09003 * 113.61538 * 105.47085 * 20 5 3 35 35 H 1.09005 * 113.61509 * 334.56695 * 20 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 -0.0006 6 1 4.0250 0.6358 0.7540 7 6 4.1906 1.1237 -1.3978 8 6 5.1807 2.2269 -0.9886 9 1 5.3965 2.9391 -1.7850 10 7 6.3903 1.7179 -0.3374 11 6 7.5998 1.7316 -1.0143 12 7 8.7270 1.3111 -0.5300 13 6 9.7840 1.3953 -1.3182 14 6 11.1560 0.9408 -0.8918 15 8 11.8894 0.5013 -2.0368 16 14 10.9958 -0.4648 0.3203 17 6 9.5397 1.9196 -2.5195 18 6 10.5540 2.1383 -3.6122 19 16 7.8245 2.3121 -2.6067 20 6 4.1078 2.7142 -0.0011 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 3.5226 1.4152 -2.2083 25 1 4.6609 0.1544 -1.5634 26 1 6.3448 1.3713 0.5674 27 1 11.6828 1.7698 -0.4192 28 1 11.4782 -0.2363 -2.5079 29 1 12.3422 -0.9218 0.7490 30 1 10.2077 -0.0297 1.5013 31 1 10.0643 2.5825 -4.4790 32 1 11.3356 2.8081 -3.2537 33 1 10.9957 1.1827 -3.8946 34 1 4.5112 3.0293 0.9612 35 1 3.4171 3.4403 -0.4300 There are 49 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 49 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_12121850_15704122.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:18:23 Heat of formation + Delta-G solvation = -34.851537 kcal Electronic energy + Delta-G solvation = -20048.464096 eV Core-core repulsion = 16755.342151 eV Total energy + Delta-G solvation = -3293.121944 eV No. of doubly occupied orbitals = 49 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 285.087 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.02584 -41.03415 -40.06334 -37.79922 -37.39774 -35.22987 -32.50639 -29.72307 -29.04793 -27.11543 -26.99041 -25.56044 -24.36109 -22.81419 -20.98147 -20.57416 -19.05413 -18.78797 -17.98586 -17.82090 -17.48076 -17.14324 -16.70417 -16.51993 -15.67035 -15.56697 -15.29823 -14.98281 -14.46945 -14.15654 -14.12113 -13.82678 -13.71751 -13.59537 -13.44541 -13.24639 -12.93916 -12.72823 -12.31590 -12.11558 -11.95845 -11.84013 -11.80758 -11.45174 -11.00540 -10.59131 -10.33707 -9.98795 -8.66914 -4.84613 0.00741 0.16218 0.77239 1.08131 1.38813 1.63088 1.73698 1.89080 1.93846 2.25495 2.99322 3.07343 3.32676 3.38933 3.53821 3.56100 3.88885 4.08033 4.11769 4.17946 4.19357 4.33453 4.35476 4.42099 4.53648 4.55787 4.58154 4.64683 4.78365 4.81296 4.89303 5.08499 5.29760 5.32427 5.54074 6.18991 6.49780 6.66154 6.94192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.357 6.357 3 C 0.470 3.530 4 O -0.503 6.503 5 C -0.111 4.111 6 H 0.127 0.873 7 C -0.136 4.136 8 C 0.128 3.872 9 H 0.105 0.895 10 N -0.678 5.678 11 C 0.318 3.682 12 N -0.541 5.541 13 C 0.064 3.936 14 C -0.033 4.033 15 O -0.535 6.535 16 Si 0.716 3.284 17 C -0.236 4.236 18 C -0.060 4.060 19 S 0.105 5.895 20 C -0.122 4.122 21 H 0.104 0.896 22 H 0.064 0.936 23 H 0.064 0.936 24 H 0.102 0.898 25 H 0.092 0.908 26 H 0.414 0.586 27 H 0.120 0.880 28 H 0.379 0.621 29 H -0.262 1.262 30 H -0.252 1.252 31 H 0.058 0.942 32 H 0.075 0.925 33 H 0.084 0.916 34 H 0.089 0.911 35 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.424 -2.496 -2.559 4.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.273 6.273 3 C 0.313 3.687 4 O -0.391 6.391 5 C -0.131 4.131 6 H 0.145 0.855 7 C -0.175 4.175 8 C 0.021 3.979 9 H 0.123 0.877 10 N -0.319 5.319 11 C -0.053 4.053 12 N -0.267 5.267 13 C -0.066 4.066 14 C -0.146 4.146 15 O -0.340 6.340 16 Si 0.617 3.383 17 C -0.359 4.359 18 C -0.120 4.120 19 S 0.354 5.646 20 C -0.160 4.160 21 H 0.122 0.878 22 H 0.083 0.917 23 H 0.083 0.917 24 H 0.121 0.879 25 H 0.111 0.889 26 H 0.252 0.748 27 H 0.137 0.863 28 H 0.226 0.774 29 H -0.188 1.188 30 H -0.176 1.176 31 H 0.077 0.923 32 H 0.093 0.907 33 H 0.102 0.898 34 H 0.108 0.892 35 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -2.893 -1.704 -1.868 3.842 hybrid contribution 0.283 0.317 0.685 0.806 sum -2.610 -1.388 -1.182 3.184 Atomic orbital electron populations 1.23334 0.75848 1.04068 1.02746 1.86519 1.23795 1.33260 1.83733 1.23506 0.91587 0.81478 0.72159 1.90693 1.66950 1.36419 1.44998 1.22608 0.87833 1.00883 1.01730 0.85503 1.23508 0.97732 1.01296 0.94957 1.21881 0.83447 0.96074 0.96459 0.87667 1.43546 1.02187 1.68585 1.17563 1.23217 0.89775 0.98036 0.94263 1.65957 0.97120 1.27714 1.35930 1.20111 0.95136 1.01140 0.90221 1.24520 0.87312 1.07098 0.95691 1.86527 1.49749 1.54977 1.42758 0.94110 0.80558 0.83925 0.79717 1.25183 0.96568 1.12386 1.01732 1.20161 0.95027 1.03157 0.93608 1.83997 1.05752 1.63056 1.11822 1.23360 0.96460 0.95093 1.01107 0.87808 0.91719 0.91695 0.87918 0.88921 0.74762 0.86306 0.77364 1.18765 1.17630 0.92324 0.90682 0.89796 0.89205 0.86520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.04 10.56 101.05 1.07 1.03 16 2 O -0.36 -0.24 10.56 -39.24 -0.41 -0.66 16 3 C 0.47 0.37 7.48 36.01 0.27 0.64 16 4 O -0.50 -1.82 15.65 -18.75 -0.29 -2.11 16 5 C -0.11 0.25 4.14 -90.96 -0.38 -0.12 16 6 H 0.13 -0.46 8.14 -51.93 -0.42 -0.88 16 7 C -0.14 0.41 7.43 -25.92 -0.19 0.22 16 8 C 0.13 -0.36 4.31 -67.14 -0.29 -0.64 16 9 H 0.11 -0.31 7.06 -51.93 -0.37 -0.67 16 10 N -0.68 0.93 5.42 -55.01 -0.30 0.63 16 11 C 0.32 0.31 8.24 -87.68 -0.72 -0.41 16 12 N -0.54 -1.42 8.95 -11.36 -0.10 -1.52 16 13 C 0.06 0.12 5.91 -84.18 -0.50 -0.38 16 14 C -0.03 -0.03 2.94 36.00 0.11 0.08 16 15 O -0.54 0.10 10.17 -35.23 -0.36 -0.26 16 16 Si 0.72 0.55 32.09 -169.99 -5.45 -4.90 16 17 C -0.24 -0.25 6.50 -36.03 -0.23 -0.48 16 18 C -0.06 0.03 8.91 36.00 0.32 0.35 16 19 S 0.10 0.01 21.69 -107.50 -2.33 -2.32 16 20 C -0.12 0.32 7.15 -25.94 -0.19 0.13 16 21 H 0.10 -0.35 8.14 -51.93 -0.42 -0.77 16 22 H 0.06 -0.06 8.13 -51.93 -0.42 -0.48 16 23 H 0.06 -0.07 8.13 -51.93 -0.42 -0.50 16 24 H 0.10 -0.34 8.09 -51.93 -0.42 -0.76 16 25 H 0.09 -0.28 8.14 -51.93 -0.42 -0.70 16 26 H 0.41 -0.85 8.83 -40.82 -0.36 -1.21 16 27 H 0.12 0.17 7.96 -51.93 -0.41 -0.24 16 28 H 0.38 -1.40 8.13 45.56 0.37 -1.03 16 29 H -0.26 -0.85 7.11 56.52 0.40 -0.45 16 30 H -0.25 -1.06 7.11 56.52 0.40 -0.66 16 31 H 0.06 -0.06 8.14 -51.92 -0.42 -0.49 16 32 H 0.07 0.02 8.14 -51.93 -0.42 -0.40 16 33 H 0.08 -0.14 6.40 -51.93 -0.33 -0.47 16 34 H 0.09 -0.27 8.14 -51.93 -0.42 -0.69 16 35 H 0.12 -0.21 7.43 -51.93 -0.39 -0.60 16 LS Contribution 311.33 15.07 4.69 4.69 Total: 0.00 -7.26 311.33 -9.78 -17.04 By element: Atomic # 1 Polarization: -6.52 SS G_CDS: -4.49 Total: -11.01 kcal Atomic # 6 Polarization: 1.15 SS G_CDS: -0.74 Total: 0.41 kcal Atomic # 7 Polarization: -0.49 SS G_CDS: -0.40 Total: -0.89 kcal Atomic # 8 Polarization: -1.96 SS G_CDS: -1.07 Total: -3.03 kcal Atomic # 14 Polarization: 0.55 SS G_CDS: -5.45 Total: -4.90 kcal Atomic # 16 Polarization: 0.01 SS G_CDS: -2.33 Total: -2.32 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -7.26 -9.78 -17.04 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12121850_15704122.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.811 kcal (2) G-P(sol) polarization free energy of solvation -7.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds