Wall clock time and date at job start Mon Mar 8 2021 05:18:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34223 * 117.00267 * 2 1 4 4 O 1.20826 * 119.99889 * 359.97438 * 3 2 1 5 5 C 1.50706 * 120.00493 * 180.02562 * 3 2 1 6 6 H 1.09000 * 112.90124 * 311.24849 * 5 3 2 7 7 C 1.53775 * 113.61410 * 82.49869 * 5 3 2 8 8 C 1.53775 * 87.08097 * 139.98293 * 7 5 3 9 9 H 1.08996 * 113.69638 * 220.00692 * 8 7 5 10 10 N 1.46506 * 113.61531 * 89.11408 * 8 7 5 11 11 C 1.38606 * 119.99773 * 107.50464 * 10 8 7 12 12 N 1.29691 * 124.94727 * 179.72595 * 11 10 8 13 13 C 1.32120 * 116.86564 * 179.81484 * 12 11 10 14 14 C 1.50698 * 122.71117 * 180.22570 * 13 12 11 15 15 O 1.42898 * 109.47079 * 150.26597 * 14 13 12 16 16 Si 1.86297 * 109.47169 * 30.26269 * 14 13 12 17 17 C 1.33333 * 114.58072 * 0.46759 * 13 12 11 18 18 C 1.50691 * 125.95182 * 179.75794 * 17 13 12 19 19 S 1.70969 * 124.95300 * 0.02562 * 11 10 8 20 20 C 1.53777 * 113.61467 * 179.97438 * 5 3 2 21 21 H 1.09000 * 109.46815 * 180.02562 * 1 2 3 22 22 H 1.08992 * 109.47307 * 300.00405 * 1 2 3 23 23 H 1.09007 * 109.46820 * 60.00507 * 1 2 3 24 24 H 1.09003 * 113.61490 * 25.43740 * 7 5 3 25 25 H 1.09002 * 113.61432 * 254.53550 * 7 5 3 26 26 H 0.97000 * 120.00117 * 287.50478 * 10 8 7 27 27 H 1.08998 * 109.47192 * 270.26297 * 14 13 12 28 28 H 0.96702 * 113.99849 * 299.99210 * 15 14 13 29 29 H 1.48502 * 109.99872 * 180.02562 * 16 14 13 30 30 H 1.48499 * 109.99946 * 301.32071 * 16 14 13 31 31 H 1.09010 * 109.47107 * 180.02562 * 18 17 13 32 32 H 1.09003 * 109.47098 * 300.01659 * 18 17 13 33 33 H 1.08997 * 109.47717 * 60.02209 * 18 17 13 34 34 H 1.09003 * 113.61538 * 105.47085 * 20 5 3 35 35 H 1.09005 * 113.61509 * 334.56695 * 20 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 -0.0006 6 1 4.0250 0.6358 0.7540 7 6 4.1906 1.1237 -1.3978 8 6 5.1807 2.2269 -0.9886 9 1 5.3965 2.9391 -1.7850 10 7 6.3903 1.7179 -0.3374 11 6 7.5998 1.7316 -1.0143 12 7 8.7270 1.3111 -0.5300 13 6 9.7840 1.3953 -1.3182 14 6 11.1560 0.9408 -0.8918 15 8 11.8894 0.5013 -2.0368 16 14 10.9958 -0.4648 0.3203 17 6 9.5397 1.9196 -2.5195 18 6 10.5540 2.1383 -3.6122 19 16 7.8245 2.3121 -2.6067 20 6 4.1078 2.7142 -0.0011 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 3.5226 1.4152 -2.2083 25 1 4.6609 0.1544 -1.5634 26 1 6.3448 1.3713 0.5674 27 1 11.6828 1.7698 -0.4192 28 1 11.4782 -0.2363 -2.5079 29 1 12.3422 -0.9218 0.7490 30 1 10.2077 -0.0297 1.5013 31 1 10.0643 2.5825 -4.4790 32 1 11.3356 2.8081 -3.2537 33 1 10.9957 1.1827 -3.8946 34 1 4.5112 3.0293 0.9612 35 1 3.4171 3.4403 -0.4300 There are 49 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 49 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_12121850_15704122.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:18:22 Heat of formation + Delta-G solvation = -32.046604 kcal Electronic energy + Delta-G solvation = -20048.342465 eV Core-core repulsion = 16755.342151 eV Total energy + Delta-G solvation = -3293.000313 eV No. of doubly occupied orbitals = 49 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 285.087 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.99901 -41.06620 -39.98803 -37.79828 -37.46102 -35.17209 -32.47924 -29.68466 -29.02919 -26.93902 -26.86209 -25.56034 -24.36428 -22.76730 -20.95240 -20.50440 -19.02850 -18.78469 -17.99522 -17.80830 -17.48183 -17.11127 -16.63948 -16.48184 -15.67734 -15.53302 -15.23153 -14.92747 -14.43222 -14.26139 -14.07838 -13.82878 -13.60150 -13.51081 -13.40891 -13.15982 -12.87265 -12.71947 -12.38637 -12.02784 -11.93778 -11.86717 -11.78680 -11.44647 -10.94189 -10.63346 -10.37171 -10.01088 -8.65042 -4.94809 -0.01779 0.16334 0.75060 1.04776 1.31373 1.70655 1.74092 1.82955 1.85624 2.13234 3.16496 3.24961 3.38209 3.54416 3.57258 3.71294 4.03918 4.17173 4.24704 4.27399 4.30666 4.34198 4.50276 4.55809 4.63055 4.67726 4.77382 4.86987 4.88159 4.90149 4.97013 5.13082 5.32941 5.35966 5.63748 6.28002 6.63305 6.68691 6.94488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.364 6.364 3 C 0.469 3.531 4 O -0.537 6.537 5 C -0.110 4.110 6 H 0.143 0.857 7 C -0.127 4.127 8 C 0.132 3.868 9 H 0.110 0.890 10 N -0.672 5.672 11 C 0.310 3.690 12 N -0.569 5.569 13 C 0.051 3.949 14 C -0.030 4.030 15 O -0.540 6.540 16 Si 0.792 3.208 17 C -0.245 4.245 18 C -0.059 4.059 19 S 0.127 5.873 20 C -0.118 4.118 21 H 0.127 0.873 22 H 0.060 0.940 23 H 0.062 0.938 24 H 0.106 0.894 25 H 0.097 0.903 26 H 0.417 0.583 27 H 0.111 0.889 28 H 0.395 0.605 29 H -0.296 1.296 30 H -0.300 1.300 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.096 0.904 34 H 0.094 0.906 35 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.510 -2.886 -3.432 5.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.280 6.280 3 C 0.314 3.686 4 O -0.427 6.427 5 C -0.128 4.128 6 H 0.161 0.839 7 C -0.166 4.166 8 C 0.026 3.974 9 H 0.128 0.872 10 N -0.312 5.312 11 C -0.061 4.061 12 N -0.297 5.297 13 C -0.079 4.079 14 C -0.143 4.143 15 O -0.347 6.347 16 Si 0.699 3.301 17 C -0.368 4.368 18 C -0.118 4.118 19 S 0.376 5.624 20 C -0.156 4.156 21 H 0.145 0.855 22 H 0.078 0.922 23 H 0.081 0.919 24 H 0.125 0.875 25 H 0.115 0.885 26 H 0.256 0.744 27 H 0.129 0.871 28 H 0.245 0.755 29 H -0.224 1.224 30 H -0.228 1.228 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.115 0.885 34 H 0.113 0.887 35 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -2.997 -2.116 -2.770 4.597 hybrid contribution 0.251 0.441 0.989 1.112 sum -2.747 -1.675 -1.780 3.677 Atomic orbital electron populations 1.23520 0.75095 1.05559 1.02451 1.86523 1.24722 1.33265 1.83459 1.24081 0.92611 0.80983 0.70969 1.90676 1.67905 1.37395 1.46723 1.22756 0.85864 1.01440 1.02785 0.83939 1.23479 0.97314 1.01331 0.94514 1.21887 0.82888 0.96256 0.96410 0.87242 1.43640 1.01873 1.68042 1.17657 1.23438 0.89993 0.97815 0.94888 1.65952 0.97835 1.29031 1.36835 1.20203 0.95219 1.01861 0.90601 1.24434 0.87157 1.06638 0.96113 1.86495 1.49863 1.55903 1.42430 0.93232 0.76824 0.82666 0.77395 1.25428 0.97462 1.12013 1.01848 1.20195 0.94557 1.03723 0.93320 1.83860 1.05000 1.62616 1.10891 1.23310 0.96178 0.94798 1.01346 0.85476 0.92155 0.91901 0.87546 0.88490 0.74402 0.87143 0.75475 1.22375 1.22785 0.91628 0.91473 0.88542 0.88736 0.87257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.06 10.56 113.37 1.20 1.14 16 2 O -0.36 -0.51 10.56 -51.35 -0.54 -1.05 16 3 C 0.47 0.87 7.48 71.24 0.53 1.40 16 4 O -0.54 -4.34 15.65 21.96 0.34 -3.99 16 5 C -0.11 0.54 4.14 -11.02 -0.05 0.49 16 6 H 0.14 -1.15 8.14 -2.39 -0.02 -1.17 16 7 C -0.13 0.87 7.43 31.12 0.23 1.10 16 8 C 0.13 -0.81 4.31 45.50 0.20 -0.61 16 9 H 0.11 -0.72 7.06 -2.39 -0.02 -0.74 16 10 N -0.67 2.11 5.42 -327.96 -1.78 0.33 16 11 C 0.31 0.54 8.24 179.32 1.48 2.02 16 12 N -0.57 -3.15 8.95 -189.86 -1.70 -4.85 16 13 C 0.05 0.19 5.91 41.41 0.24 0.44 16 14 C -0.03 -0.06 2.94 71.24 0.21 0.15 16 15 O -0.54 0.48 10.17 -148.98 -1.52 -1.03 16 16 Si 0.79 1.91 32.09 68.60 2.20 4.11 16 17 C -0.24 -0.41 6.50 24.57 0.16 -0.25 16 18 C -0.06 0.10 8.91 71.23 0.63 0.73 16 19 S 0.13 -0.05 21.69 -56.49 -1.23 -1.27 16 20 C -0.12 0.64 7.15 31.11 0.22 0.86 16 21 H 0.13 -0.93 8.14 -2.39 -0.02 -0.95 16 22 H 0.06 -0.08 8.13 -2.39 -0.02 -0.09 16 23 H 0.06 -0.11 8.13 -2.38 -0.02 -0.13 16 24 H 0.11 -0.76 8.09 -2.39 -0.02 -0.78 16 25 H 0.10 -0.69 8.14 -2.39 -0.02 -0.71 16 26 H 0.42 -1.84 8.83 -92.71 -0.82 -2.65 16 27 H 0.11 0.40 7.96 -2.39 -0.02 0.38 16 28 H 0.39 -3.34 8.13 -74.06 -0.60 -3.94 16 29 H -0.30 -2.29 7.11 99.48 0.71 -1.58 16 30 H -0.30 -3.14 7.11 99.48 0.71 -2.43 16 31 H 0.06 -0.20 8.14 -2.38 -0.02 -0.22 16 32 H 0.07 0.01 8.14 -2.39 -0.02 -0.01 16 33 H 0.10 -0.43 6.40 -2.39 -0.02 -0.44 16 34 H 0.09 -0.58 8.14 -2.39 -0.02 -0.60 16 35 H 0.11 -0.36 7.43 -2.38 -0.02 -0.38 16 Total: 0.00 -17.36 311.33 0.59 -16.76 By element: Atomic # 1 Polarization: -16.21 SS G_CDS: -0.25 Total: -16.46 kcal Atomic # 6 Polarization: 2.40 SS G_CDS: 5.06 Total: 7.46 kcal Atomic # 7 Polarization: -1.05 SS G_CDS: -3.48 Total: -4.52 kcal Atomic # 8 Polarization: -4.37 SS G_CDS: -1.71 Total: -6.08 kcal Atomic # 14 Polarization: 1.91 SS G_CDS: 2.20 Total: 4.11 kcal Atomic # 16 Polarization: -0.05 SS G_CDS: -1.23 Total: -1.27 kcal Total: -17.36 0.59 -16.76 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12121850_15704122.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.285 kcal (2) G-P(sol) polarization free energy of solvation -17.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds