Wall clock time and date at job start Mon Mar 8 2021 05:18:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34230 * 116.99836 * 2 1 4 4 O 1.20833 * 119.99930 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00262 * 180.27336 * 3 2 1 6 6 H 1.09005 * 112.85050 * 48.51890 * 5 3 2 7 7 C 1.53776 * 113.61980 * 179.72212 * 5 3 2 8 8 C 1.53780 * 87.08410 * 139.97809 * 7 5 3 9 9 H 1.08996 * 113.61102 * 220.01744 * 8 7 5 10 10 N 1.46504 * 113.60999 * 89.19918 * 8 7 5 11 11 C 1.39146 * 119.99411 * 154.99931 * 10 8 7 12 12 N 1.32337 * 119.72140 * 0.02562 * 11 10 8 13 13 C 1.32009 * 121.64647 * 179.97438 * 12 11 10 14 14 C 1.37979 * 120.90196 * 359.97438 * 13 12 11 15 15 C 1.50702 * 120.32581 * 179.97438 * 14 13 12 16 16 O 1.42901 * 109.47016 * 245.00401 * 15 14 13 17 17 Si 1.86298 * 109.47141 * 5.00186 * 15 14 13 18 18 C 1.38900 * 119.34904 * 0.02562 * 14 13 12 19 19 C 1.38449 * 118.48368 * 359.74501 * 18 14 13 20 20 F 1.35102 * 120.47413 * 180.27217 * 19 18 14 21 21 C 1.53780 * 87.07946 * 334.56775 * 8 7 5 22 22 H 1.09004 * 109.46770 * 60.01042 * 1 2 3 23 23 H 1.09001 * 109.46882 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47630 * 300.00638 * 1 2 3 25 25 H 1.09000 * 113.61363 * 254.53316 * 7 5 3 26 26 H 1.09002 * 113.61389 * 25.33961 * 7 5 3 27 27 H 0.96998 * 120.00486 * 335.00339 * 10 8 7 28 28 H 1.08004 * 119.54520 * 179.97438 * 13 12 11 29 29 H 1.09000 * 109.47039 * 125.00398 * 15 14 13 30 30 H 0.96702 * 113.99841 * 180.02562 * 16 15 14 31 31 H 1.48502 * 109.99895 * 178.68115 * 17 15 14 32 32 H 1.48505 * 110.00275 * 299.99941 * 17 15 14 33 33 H 1.08000 * 120.76431 * 179.97438 * 18 14 13 34 34 H 1.08996 * 113.61527 * 270.87817 * 21 8 7 35 35 H 1.08999 * 113.61274 * 139.98029 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5663 1.2750 -0.0062 6 1 4.0206 0.6344 -0.7621 7 6 4.1077 2.7143 -0.0122 8 6 5.1849 2.2296 0.9724 9 1 5.4030 2.9433 1.7668 10 7 6.3924 1.7207 0.3173 11 6 7.6092 1.7367 0.9920 12 7 7.6692 2.2124 2.2255 13 6 8.8030 2.2451 2.9008 14 6 9.9752 1.7805 2.3406 15 6 11.2624 1.8246 3.1231 16 8 12.1756 2.7214 2.4876 17 14 10.9160 2.4155 4.8555 18 6 9.9574 1.2727 1.0478 19 6 8.7531 1.2463 0.3653 20 9 8.6886 0.7560 -0.8919 21 6 4.1966 1.1274 1.3887 22 1 -0.3633 0.5137 -0.8901 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 4.5068 3.0266 -0.9772 26 1 3.4183 3.4419 0.4160 27 1 6.3437 1.3727 -0.5868 28 1 8.8132 2.6410 3.9056 29 1 11.6994 0.8268 3.1601 30 1 13.0278 2.7993 2.9379 31 1 12.1725 2.4332 5.6469 32 1 10.3198 3.7752 4.8188 33 1 10.8616 0.9034 0.5869 34 1 3.5322 1.4209 2.2014 35 1 4.6676 0.1586 1.5547 There are 51 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 51 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_12121850_17656566.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:18:25 Heat of formation + Delta-G solvation = -79.621331 kcal Electronic energy + Delta-G solvation = -21778.516063 eV Core-core repulsion = 18080.384152 eV Total energy + Delta-G solvation = -3698.131911 eV No. of doubly occupied orbitals = 51 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 283.105 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.94486 -42.00479 -41.33883 -39.82572 -37.97201 -37.48198 -35.41646 -33.24541 -31.38186 -29.36437 -27.22394 -26.83904 -26.20014 -24.88712 -22.88460 -22.41641 -20.44570 -19.63452 -18.74859 -18.57949 -18.19993 -18.04699 -17.75115 -17.40972 -16.91966 -16.50545 -16.24848 -15.69879 -15.37695 -15.03317 -14.92924 -14.85394 -14.26192 -14.21514 -14.03722 -13.89393 -13.69579 -13.46976 -13.10843 -12.80729 -12.57345 -12.07728 -11.99019 -11.87451 -11.77590 -11.38892 -11.17064 -10.73053 -10.70747 -10.40993 -8.79599 -4.87938 -0.08585 0.10819 1.05497 1.32486 1.64424 1.71626 1.90222 1.99585 2.50119 3.02414 3.19002 3.25657 3.36271 3.42561 3.67592 3.70666 3.78198 3.87500 4.03690 4.10121 4.25094 4.27541 4.37805 4.47125 4.52760 4.65313 4.68216 4.70835 4.74225 4.86506 4.91599 5.00899 5.04659 5.32763 5.41934 5.95115 6.17826 6.63018 6.64023 6.94618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.364 6.364 3 C 0.469 3.531 4 O -0.538 6.538 5 C -0.109 4.109 6 H 0.142 0.858 7 C -0.123 4.123 8 C 0.141 3.859 9 H 0.110 0.890 10 N -0.696 5.696 11 C 0.384 3.616 12 N -0.523 5.523 13 C 0.145 3.855 14 C -0.165 4.165 15 C -0.071 4.071 16 O -0.560 6.560 17 Si 0.760 3.240 18 C -0.041 4.041 19 C -0.032 4.032 20 F -0.138 7.138 21 C -0.124 4.124 22 H 0.060 0.940 23 H 0.128 0.872 24 H 0.061 0.939 25 H 0.091 0.909 26 H 0.102 0.898 27 H 0.419 0.581 28 H 0.179 0.821 29 H 0.101 0.899 30 H 0.397 0.603 31 H -0.284 1.284 32 H -0.293 1.293 33 H 0.157 0.843 34 H 0.098 0.902 35 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.415 -4.238 2.655 5.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.280 6.280 3 C 0.314 3.686 4 O -0.428 6.428 5 C -0.128 4.128 6 H 0.160 0.840 7 C -0.161 4.161 8 C 0.035 3.965 9 H 0.128 0.872 10 N -0.329 5.329 11 C 0.146 3.854 12 N -0.240 5.240 13 C -0.012 4.012 14 C -0.170 4.170 15 C -0.180 4.180 16 O -0.370 6.370 17 Si 0.665 3.335 18 C -0.068 4.068 19 C -0.058 4.058 20 F -0.117 7.117 21 C -0.163 4.163 22 H 0.079 0.921 23 H 0.146 0.854 24 H 0.080 0.920 25 H 0.110 0.890 26 H 0.121 0.879 27 H 0.257 0.743 28 H 0.196 0.804 29 H 0.119 0.881 30 H 0.247 0.753 31 H -0.211 1.211 32 H -0.220 1.220 33 H 0.175 0.825 34 H 0.117 0.883 35 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -0.079 -2.941 3.267 4.396 hybrid contribution 1.442 -0.018 -1.628 2.175 sum 1.363 -2.959 1.638 3.647 Atomic orbital electron populations 1.23524 0.75108 1.05577 1.02437 1.86526 1.24736 1.33240 1.83487 1.24116 0.92634 0.80976 0.70906 1.90670 1.67910 1.37429 1.46784 1.22783 0.85751 1.01492 1.02796 0.84003 1.23340 0.96730 0.94569 1.01486 1.21663 0.82803 0.96025 0.96029 0.87178 1.44205 1.03601 1.67525 1.17544 1.18500 0.85902 0.91609 0.89422 1.67340 1.29465 1.21145 1.06023 1.22650 0.86362 0.92783 0.99411 1.20026 0.95888 1.05380 0.95689 1.24768 0.89164 0.97901 1.06166 1.86549 1.29492 1.66386 1.54605 0.94236 0.83138 0.82495 0.73635 1.21460 0.96656 0.94969 0.93686 1.18069 0.94989 1.09847 0.82911 1.91475 1.96944 1.86173 1.37118 1.23385 0.97482 1.01356 0.94120 0.92103 0.85396 0.91994 0.89006 0.87911 0.74271 0.80433 0.88107 0.75259 1.21095 1.22047 0.82513 0.88346 0.89166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.02 10.56 113.37 1.20 1.18 16 2 O -0.36 -1.17 10.57 -51.41 -0.54 -1.71 16 3 C 0.47 1.95 7.48 71.23 0.53 2.49 16 4 O -0.54 -5.58 15.65 21.94 0.34 -5.24 16 5 C -0.11 0.23 4.14 -11.02 -0.05 0.19 16 6 H 0.14 -0.83 8.14 -2.38 -0.02 -0.85 16 7 C -0.12 0.25 7.15 31.12 0.22 0.48 16 8 C 0.14 -0.28 4.35 45.52 0.20 -0.08 16 9 H 0.11 0.00 7.41 -2.39 -0.02 -0.01 16 10 N -0.70 0.69 5.42 -321.78 -1.74 -1.05 16 11 C 0.38 1.12 7.49 133.08 1.00 2.12 16 12 N -0.52 -1.80 9.13 -193.03 -1.76 -3.56 16 13 C 0.14 0.12 9.83 84.60 0.83 0.95 16 14 C -0.16 -0.07 5.39 -19.77 -0.11 -0.17 16 15 C -0.07 0.24 2.81 71.24 0.20 0.44 16 16 O -0.56 0.13 12.82 -148.98 -1.91 -1.78 16 17 Si 0.76 -3.52 29.88 68.60 2.05 -1.47 16 18 C -0.04 -0.07 9.82 22.48 0.22 0.15 16 19 C -0.03 -0.11 7.35 22.59 0.17 0.06 16 20 F -0.14 -0.56 16.65 44.97 0.75 0.19 16 21 C -0.12 0.37 7.43 31.12 0.23 0.60 16 22 H 0.06 0.00 8.13 -2.38 -0.02 -0.02 16 23 H 0.13 -0.80 8.14 -2.39 -0.02 -0.81 16 24 H 0.06 -0.01 8.13 -2.39 -0.02 -0.03 16 25 H 0.09 -0.32 8.14 -2.39 -0.02 -0.34 16 26 H 0.10 0.06 7.43 -2.39 -0.02 0.04 16 27 H 0.42 -1.50 8.18 -92.71 -0.76 -2.26 16 28 H 0.18 -0.60 4.87 -2.91 -0.01 -0.62 16 29 H 0.10 -0.78 7.96 -2.39 -0.02 -0.80 16 30 H 0.40 -3.23 8.74 -74.06 -0.65 -3.88 16 31 H -0.28 0.07 7.11 99.48 0.71 0.78 16 32 H -0.29 -0.70 7.05 99.48 0.70 0.00 16 33 H 0.16 -0.13 8.06 -2.91 -0.02 -0.15 16 34 H 0.10 -0.26 8.09 -2.39 -0.02 -0.28 16 35 H 0.09 -0.29 8.14 -2.39 -0.02 -0.31 16 Total: 0.00 -17.37 307.64 1.60 -15.77 By element: Atomic # 1 Polarization: -9.32 SS G_CDS: -0.22 Total: -9.55 kcal Atomic # 6 Polarization: 3.75 SS G_CDS: 4.64 Total: 8.39 kcal Atomic # 7 Polarization: -1.11 SS G_CDS: -3.51 Total: -4.61 kcal Atomic # 8 Polarization: -6.62 SS G_CDS: -2.11 Total: -8.73 kcal Atomic # 9 Polarization: -0.56 SS G_CDS: 0.75 Total: 0.19 kcal Atomic # 14 Polarization: -3.52 SS G_CDS: 2.05 Total: -1.47 kcal Total: -17.37 1.60 -15.77 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12121850_17656566.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.852 kcal (2) G-P(sol) polarization free energy of solvation -17.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds