Wall clock time and date at job start Mon Mar 8 2021 05:22:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86299 * 109.47289 * 2 1 4 4 C 1.50698 * 109.47025 * 120.00420 * 2 1 3 5 5 C 1.38605 * 120.72340 * 64.99850 * 4 2 1 6 6 N 1.32272 * 119.19705 * 180.27714 * 5 4 2 7 7 C 1.32501 * 120.74110 * 359.48581 * 6 5 4 8 8 N 1.38398 * 119.21725 * 180.26714 * 7 6 5 9 9 C 1.46500 * 120.00091 * 0.25057 * 8 7 6 10 10 H 1.08996 * 112.85357 * 23.80369 * 9 8 7 11 11 C 1.53781 * 113.61411 * 155.00349 * 9 8 7 12 12 C 1.53781 * 87.08190 * 139.98197 * 11 9 8 13 13 H 1.09007 * 113.61362 * 219.93091 * 12 11 9 14 14 O 1.42901 * 113.61291 * 89.11629 * 12 11 9 15 15 C 1.53774 * 87.08139 * 334.56459 * 12 11 9 16 16 N 1.32487 * 121.56169 * 0.52397 * 7 6 5 17 17 C 1.32280 * 120.74598 * 359.74603 * 16 7 6 18 18 H 0.96704 * 113.99585 * 59.99757 * 1 2 3 19 19 H 1.09004 * 109.47144 * 240.00147 * 2 1 3 20 20 H 1.48502 * 109.99864 * 60.00124 * 3 2 1 21 21 H 1.48500 * 109.99973 * 181.32166 * 3 2 1 22 22 H 1.08002 * 120.39780 * 359.97438 * 5 4 2 23 23 H 0.97005 * 120.00194 * 180.25775 * 8 7 6 24 24 H 1.09000 * 113.61713 * 254.53032 * 11 9 8 25 25 H 1.08996 * 113.61857 * 25.34571 * 11 9 8 26 26 H 0.96703 * 113.99351 * 179.97438 * 14 12 11 27 27 H 1.09002 * 113.61457 * 270.88925 * 15 12 11 28 28 H 1.08999 * 113.61076 * 139.97934 * 15 12 11 29 29 H 1.08001 * 120.40363 * 179.97438 * 17 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7105 1.2304 5 6 1.6925 -2.0634 1.4139 6 7 2.1425 -2.6555 2.5078 7 6 2.8229 -1.9723 3.4166 8 7 3.2838 -2.6247 4.5468 9 6 3.0224 -4.0552 4.7248 10 1 2.8453 -4.5735 3.7825 11 6 4.0440 -4.7598 5.6328 12 6 2.8599 -5.5412 6.2262 13 1 2.9239 -5.6779 7.3057 14 8 2.5681 -6.7544 5.5296 15 6 1.9706 -4.3596 5.8046 16 7 3.0681 -0.6785 3.2715 17 6 2.6417 -0.0250 2.2034 18 1 -0.3933 0.4418 -0.7651 19 1 1.7924 -0.5138 -0.8900 20 1 1.5616 2.4678 1.2085 21 1 3.5346 1.7702 -0.0322 22 1 1.1415 -2.6263 0.6750 23 1 3.7799 -2.1348 5.2213 24 1 4.7521 -5.3859 5.0899 25 1 4.5290 -4.0921 6.3449 26 1 1.8244 -7.2505 5.8984 27 1 1.8877 -3.5827 6.5646 28 1 1.0048 -4.6626 5.4003 29 1 2.8443 1.0298 2.0909 There are 40 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 40 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_12122390_12175864.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:22:27 Heat of formation + Delta-G solvation = 12.824218 kcal Electronic energy + Delta-G solvation = -15072.909929 eV Core-core repulsion = 12385.260773 eV Total energy + Delta-G solvation = -2687.649155 eV No. of doubly occupied orbitals = 40 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 224.095 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.27705 -40.52836 -37.96970 -36.76850 -34.91031 -34.79310 -32.15369 -27.05134 -26.82326 -26.16279 -24.75894 -23.05117 -21.01954 -19.43274 -19.21515 -18.34703 -18.04258 -16.74069 -16.63603 -16.47394 -15.97729 -15.79735 -15.22503 -14.83437 -14.61512 -14.12867 -13.85959 -13.49999 -13.32779 -13.05240 -12.52296 -12.33300 -12.07109 -11.87499 -11.64589 -11.20781 -10.82996 -10.61803 -10.05758 -9.22580 -4.96127 -0.15652 -0.04091 1.30395 1.65265 1.69354 1.96118 2.58756 2.95772 3.07278 3.35694 3.40925 3.43441 3.57448 3.65086 3.76948 3.86243 4.09593 4.10764 4.44914 4.50625 4.61061 4.65731 4.75609 4.90391 4.93493 4.95018 5.23053 5.59601 5.92282 6.23253 6.82542 6.95723 7.09954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.565 6.565 2 C -0.054 4.054 3 Si 0.773 3.227 4 C -0.253 4.253 5 C 0.218 3.782 6 N -0.579 5.579 7 C 0.550 3.450 8 N -0.679 5.679 9 C 0.139 3.861 10 H 0.102 0.898 11 C -0.137 4.137 12 C 0.087 3.913 13 H 0.098 0.902 14 O -0.572 6.572 15 C -0.179 4.179 16 N -0.587 5.587 17 C 0.176 3.824 18 H 0.406 0.594 19 H 0.103 0.897 20 H -0.296 1.296 21 H -0.288 1.288 22 H 0.195 0.805 23 H 0.420 0.580 24 H 0.076 0.924 25 H 0.119 0.881 26 H 0.400 0.600 27 H 0.099 0.901 28 H 0.069 0.931 29 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.456 0.599 -2.146 2.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.376 6.376 2 C -0.165 4.165 3 Si 0.679 3.321 4 C -0.261 4.261 5 C 0.050 3.950 6 N -0.302 5.302 7 C 0.193 3.807 8 N -0.315 5.315 9 C 0.034 3.966 10 H 0.120 0.880 11 C -0.176 4.176 12 C 0.027 3.973 13 H 0.115 0.885 14 O -0.380 6.380 15 C -0.219 4.219 16 N -0.310 5.310 17 C 0.009 3.991 18 H 0.258 0.742 19 H 0.121 0.879 20 H -0.223 1.223 21 H -0.215 1.215 22 H 0.212 0.788 23 H 0.258 0.742 24 H 0.095 0.905 25 H 0.137 0.863 26 H 0.251 0.749 27 H 0.117 0.883 28 H 0.088 0.912 29 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -0.083 0.381 -0.674 0.778 hybrid contribution -0.472 0.100 0.159 0.508 sum -0.555 0.481 -0.515 0.897 Atomic orbital electron populations 1.86440 1.17092 1.82426 1.51610 1.24425 0.85894 1.10439 0.95777 0.94156 0.77422 0.75520 0.84979 1.21081 1.07170 0.97172 1.00648 1.23339 0.88670 0.91370 0.91663 1.68055 1.16949 1.40226 1.04949 1.19712 0.87708 0.85263 0.88031 1.44337 1.58702 1.09623 1.18885 1.22581 0.96985 0.78263 0.98814 0.88044 1.23534 0.96722 0.98168 0.99134 1.22495 0.95194 0.83416 0.96149 0.88457 1.86432 1.56567 1.35612 1.59432 1.24175 0.98890 0.99629 0.99170 1.67873 1.28313 1.08913 1.25874 1.22869 0.89774 0.99300 0.87166 0.74237 0.87910 1.22347 1.21535 0.78786 0.74158 0.90535 0.86298 0.74903 0.88271 0.91250 0.82088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.57 1.23 12.82 -148.98 -1.91 -0.68 15 2 C -0.05 0.12 2.82 71.24 0.20 0.32 15 3 Si 0.77 -2.55 29.92 68.60 2.05 -0.50 15 4 C -0.25 -1.37 5.40 -19.69 -0.11 -1.48 15 5 C 0.22 1.36 10.99 84.71 0.93 2.29 15 6 N -0.58 -6.01 9.13 -197.99 -1.81 -7.82 15 7 C 0.55 5.91 8.43 261.49 2.20 8.11 15 8 N -0.68 -3.66 5.50 -327.93 -1.80 -5.46 15 9 C 0.14 0.47 4.18 45.52 0.19 0.66 15 10 H 0.10 0.83 7.37 -2.39 -0.02 0.82 15 11 C -0.14 0.11 7.66 31.12 0.24 0.34 15 12 C 0.09 -0.14 5.28 31.12 0.16 0.02 15 13 H 0.10 -0.56 8.14 -2.38 -0.02 -0.58 15 14 O -0.57 -0.59 13.59 -148.98 -2.02 -2.61 15 15 C -0.18 -0.05 7.71 31.12 0.24 0.19 15 16 N -0.59 -6.92 10.46 -197.99 -2.07 -8.99 15 17 C 0.18 1.55 9.92 84.71 0.84 2.39 15 18 H 0.41 -5.24 8.74 -74.05 -0.65 -5.88 15 19 H 0.10 -0.75 7.96 -2.38 -0.02 -0.77 15 20 H -0.30 -1.29 7.06 99.48 0.70 -0.59 15 21 H -0.29 -0.71 7.11 99.48 0.71 0.00 15 22 H 0.20 0.05 8.06 -2.91 -0.02 0.03 15 23 H 0.42 0.84 8.84 -92.70 -0.82 0.02 15 24 H 0.08 0.11 8.14 -2.39 -0.02 0.09 15 25 H 0.12 -0.59 8.12 -2.39 -0.02 -0.61 15 26 H 0.40 -2.89 9.12 -74.06 -0.68 -3.57 15 27 H 0.10 -0.13 8.14 -2.39 -0.02 -0.15 15 28 H 0.07 0.16 8.14 -2.39 -0.02 0.14 15 29 H 0.16 1.02 5.04 -2.91 -0.01 1.00 15 Total: 0.00 -19.67 253.79 -3.57 -23.24 By element: Atomic # 1 Polarization: -9.13 SS G_CDS: -0.90 Total: -10.03 kcal Atomic # 6 Polarization: 7.95 SS G_CDS: 4.90 Total: 12.85 kcal Atomic # 7 Polarization: -16.59 SS G_CDS: -5.68 Total: -22.27 kcal Atomic # 8 Polarization: 0.64 SS G_CDS: -3.93 Total: -3.29 kcal Atomic # 14 Polarization: -2.55 SS G_CDS: 2.05 Total: -0.50 kcal Total: -19.67 -3.57 -23.24 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12122390_12175864.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.065 kcal (2) G-P(sol) polarization free energy of solvation -19.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.241 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds