Wall clock time and date at job start Mon Mar 8 2021 05:22:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42896 * 1 3 3 Si 1.86298 * 109.47275 * 2 1 4 4 C 1.50701 * 109.47024 * 120.00200 * 2 1 3 5 5 C 1.38839 * 120.33779 * 64.97780 * 4 2 1 6 6 C 1.38345 * 118.50433 * 179.77277 * 5 4 2 7 7 C 1.39088 * 119.09804 * 0.51198 * 6 5 4 8 8 N 1.39005 * 119.70438 * 179.75519 * 7 6 5 9 9 C 1.46501 * 119.99957 * 359.72030 * 8 7 6 10 10 H 1.08998 * 112.84866 * 23.81041 * 9 8 7 11 11 C 1.53787 * 113.61128 * 155.00292 * 9 8 7 12 12 C 1.53784 * 87.07923 * 139.98386 * 11 9 8 13 13 H 1.09004 * 113.61162 * 220.01809 * 12 11 9 14 14 O 1.42900 * 113.61305 * 89.11533 * 12 11 9 15 15 C 1.53779 * 87.08045 * 334.56667 * 12 11 9 16 16 N 1.32430 * 120.59072 * 359.47299 * 7 6 5 17 17 C 1.31942 * 121.62251 * 0.26096 * 16 7 6 18 18 H 0.96703 * 114.00121 * 300.00194 * 1 2 3 19 19 H 1.08999 * 109.46946 * 240.00024 * 2 1 3 20 20 H 1.48503 * 109.99948 * 300.00326 * 3 2 1 21 21 H 1.48500 * 110.00075 * 61.31800 * 3 2 1 22 22 H 1.08003 * 120.74472 * 359.97438 * 5 4 2 23 23 H 1.07997 * 120.44601 * 180.26061 * 6 5 4 24 24 H 0.97005 * 119.99914 * 179.72593 * 8 7 6 25 25 H 1.09004 * 113.61202 * 254.53139 * 11 9 8 26 26 H 1.08994 * 113.61447 * 25.43570 * 11 9 8 27 27 H 0.96701 * 113.99636 * 180.02562 * 14 12 11 28 28 H 1.09006 * 113.61307 * 270.88660 * 15 12 11 29 29 H 1.08999 * 113.69146 * 139.99146 * 15 12 11 30 30 H 1.07998 * 119.56825 * 179.97438 * 17 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7105 1.2305 5 6 1.6872 -2.0659 1.4064 6 6 2.1698 -2.6809 2.5477 7 6 2.8699 -1.9226 3.4802 8 7 3.3561 -2.5267 4.6339 9 6 3.1248 -3.9546 4.8663 10 1 2.9497 -4.5104 3.9451 11 6 4.1685 -4.6053 5.7894 12 6 3.0055 -5.3876 6.4223 13 1 3.0812 -5.4821 7.5056 14 8 2.7317 -6.6309 5.7732 15 6 2.0891 -4.2398 5.9666 16 7 3.0823 -0.6315 3.2760 17 6 2.6385 -0.0199 2.1944 18 1 -0.3933 0.4417 0.7650 19 1 1.7923 -0.5138 -0.8900 20 1 1.5614 2.4679 -1.2085 21 1 1.5879 2.4585 1.2242 22 1 1.1357 -2.6281 0.6673 23 1 2.0017 -3.7346 2.7143 24 1 3.8484 -2.0028 5.2851 25 1 4.8840 -5.2368 5.2627 26 1 4.6453 -3.9028 6.4730 27 1 2.0010 -7.1273 6.1665 28 1 1.9975 -3.4374 6.6986 29 1 1.1255 -4.5748 5.5828 30 1 2.8304 1.0346 2.0618 There are 40 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 40 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_12122390_13915762.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:22:29 Heat of formation + Delta-G solvation = -4.199220 kcal Electronic energy + Delta-G solvation = -14942.053527 eV Core-core repulsion = 12319.092091 eV Total energy + Delta-G solvation = -2622.961436 eV No. of doubly occupied orbitals = 40 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 223.100 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.54245 -40.36867 -38.09002 -36.61385 -34.53102 -33.37432 -31.15402 -26.81876 -26.75647 -25.12784 -24.51252 -22.49372 -20.83435 -18.89789 -18.60482 -18.29893 -17.42600 -16.53482 -16.40270 -16.33223 -16.00050 -15.48950 -15.08880 -14.56053 -14.34181 -14.04194 -13.71371 -13.47917 -13.40736 -13.04529 -12.50703 -12.27695 -12.02502 -11.55871 -11.04411 -10.83525 -10.75060 -10.55303 -10.42665 -8.71806 -4.91174 0.19443 0.37171 1.33126 1.59906 1.95715 2.10409 2.77892 3.10494 3.44075 3.45204 3.57874 3.68761 3.76737 3.80147 3.96864 4.02875 4.09422 4.33438 4.47676 4.59633 4.67895 4.74493 4.80512 4.95649 4.97723 4.99535 5.10659 5.30711 5.52620 6.00541 6.49224 6.53440 6.84531 7.11506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.549 6.549 2 C -0.064 4.064 3 Si 0.758 3.242 4 C -0.233 4.233 5 C -0.011 4.011 6 C -0.245 4.245 7 C 0.394 3.606 8 N -0.708 5.708 9 C 0.132 3.868 10 H 0.107 0.893 11 C -0.138 4.138 12 C 0.083 3.917 13 H 0.091 0.909 14 O -0.571 6.571 15 C -0.181 4.181 16 N -0.564 5.564 17 C 0.145 3.855 18 H 0.384 0.616 19 H 0.126 0.874 20 H -0.299 1.299 21 H -0.283 1.283 22 H 0.146 0.854 23 H 0.144 0.856 24 H 0.408 0.592 25 H 0.076 0.924 26 H 0.114 0.886 27 H 0.400 0.600 28 H 0.097 0.903 29 H 0.075 0.925 30 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.146 -2.186 2.843 3.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.357 6.357 2 C -0.174 4.174 3 Si 0.664 3.336 4 C -0.239 4.239 5 C -0.037 4.037 6 C -0.270 4.270 7 C 0.158 3.842 8 N -0.339 5.339 9 C 0.027 3.973 10 H 0.125 0.875 11 C -0.177 4.177 12 C 0.023 3.977 13 H 0.109 0.891 14 O -0.380 6.380 15 C -0.220 4.220 16 N -0.282 5.282 17 C -0.012 4.012 18 H 0.233 0.767 19 H 0.143 0.857 20 H -0.227 1.227 21 H -0.209 1.209 22 H 0.164 0.836 23 H 0.161 0.839 24 H 0.245 0.755 25 H 0.095 0.905 26 H 0.132 0.868 27 H 0.251 0.749 28 H 0.115 0.885 29 H 0.093 0.907 30 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 1.950 -1.228 2.571 3.452 hybrid contribution -1.894 -0.522 0.483 2.023 sum 0.056 -1.749 3.054 3.520 Atomic orbital electron populations 1.86564 1.18748 1.80320 1.50091 1.24931 0.83128 1.11300 0.98038 0.94159 0.90473 0.72425 0.76549 1.20967 1.06838 0.96018 1.00047 1.21413 0.93010 0.93691 0.95558 1.21654 1.06652 1.01865 0.96814 1.18694 0.89502 0.88469 0.87503 1.44650 1.59851 1.09250 1.20197 1.22623 0.97037 0.79450 0.98216 0.87502 1.23498 0.96757 0.98512 0.98888 1.22521 0.95609 0.83093 0.96463 0.89131 1.86422 1.58011 1.33095 1.60464 1.24201 0.98967 0.99624 0.99248 1.67186 1.26826 1.09672 1.24500 1.22534 0.91414 0.99701 0.87548 0.76662 0.85674 1.22688 1.20931 0.83630 0.83869 0.75523 0.90508 0.86796 0.74935 0.88480 0.90663 0.81556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -1.68 12.84 -148.98 -1.91 -3.59 16 2 C -0.06 -0.01 2.82 71.24 0.20 0.19 16 3 Si 0.76 -0.85 29.91 68.60 2.05 1.20 16 4 C -0.23 -0.47 5.36 -19.76 -0.11 -0.57 16 5 C -0.01 -0.03 9.83 22.44 0.22 0.20 16 6 C -0.25 -0.73 9.29 22.50 0.21 -0.53 16 7 C 0.39 1.91 7.65 133.04 1.02 2.93 16 8 N -0.71 -0.47 5.53 -322.05 -1.78 -2.25 16 9 C 0.13 -0.25 3.97 45.52 0.18 -0.07 16 10 H 0.11 -0.06 6.09 -2.39 -0.01 -0.07 16 11 C -0.14 0.52 7.66 31.12 0.24 0.76 16 12 C 0.08 -0.37 5.28 31.12 0.16 -0.21 16 13 H 0.09 -0.67 8.14 -2.39 -0.02 -0.68 16 14 O -0.57 1.24 13.59 -148.98 -2.02 -0.79 16 15 C -0.18 0.71 7.71 31.12 0.24 0.95 16 16 N -0.56 -3.84 10.39 -193.27 -2.01 -5.85 16 17 C 0.15 0.51 9.84 84.64 0.83 1.34 16 18 H 0.38 -0.79 8.70 -74.06 -0.64 -1.43 16 19 H 0.13 -0.23 7.96 -2.39 -0.02 -0.25 16 20 H -0.30 -1.85 7.11 99.48 0.71 -1.14 16 21 H -0.28 -0.78 7.01 99.48 0.70 -0.08 16 22 H 0.15 -0.05 8.06 -2.91 -0.02 -0.08 16 23 H 0.14 0.03 6.03 -2.91 -0.02 0.01 16 24 H 0.41 -0.32 8.85 -92.70 -0.82 -1.14 16 25 H 0.08 -0.12 8.14 -2.39 -0.02 -0.14 16 26 H 0.11 -0.76 8.12 -2.39 -0.02 -0.78 16 27 H 0.40 -3.99 9.12 -74.06 -0.68 -4.67 16 28 H 0.10 -0.43 8.14 -2.38 -0.02 -0.45 16 29 H 0.07 -0.24 8.14 -2.39 -0.02 -0.26 16 30 H 0.17 -0.07 4.85 -2.91 -0.01 -0.09 16 Total: 0.00 -14.13 256.12 -3.40 -17.53 By element: Atomic # 1 Polarization: -10.32 SS G_CDS: -0.92 Total: -11.24 kcal Atomic # 6 Polarization: 1.79 SS G_CDS: 3.20 Total: 4.99 kcal Atomic # 7 Polarization: -4.31 SS G_CDS: -3.79 Total: -8.10 kcal Atomic # 8 Polarization: -0.44 SS G_CDS: -3.94 Total: -4.38 kcal Atomic # 14 Polarization: -0.85 SS G_CDS: 2.05 Total: 1.20 kcal Total: -14.13 -3.40 -17.53 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12122390_13915762.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.329 kcal (2) G-P(sol) polarization free energy of solvation -14.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds