Wall clock time and date at job start Mon Mar 8 2021 05:22:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86298 * 109.47310 * 2 1 4 4 C 1.50700 * 109.47255 * 119.99811 * 2 1 3 5 5 C 1.33329 * 125.94946 * 64.99528 * 4 2 1 6 6 N 1.32124 * 114.58022 * 179.75777 * 5 4 2 7 7 C 1.29687 * 116.86543 * 0.24636 * 6 5 4 8 8 N 1.38608 * 124.95276 * 180.02562 * 7 6 5 9 9 C 1.46500 * 119.99669 * 359.97438 * 8 7 6 10 10 H 1.08995 * 112.84780 * 336.18664 * 9 8 7 11 11 C 1.53779 * 113.61606 * 107.49939 * 9 8 7 12 12 C 1.53782 * 87.07954 * 89.11485 * 11 9 8 13 13 H 1.08999 * 113.69281 * 270.86962 * 12 11 9 14 14 O 1.42908 * 113.61380 * 139.98404 * 12 11 9 15 15 C 1.53771 * 87.08461 * 25.43260 * 12 11 9 16 16 S 1.70968 * 110.10148 * 0.02562 * 7 6 5 17 17 H 0.96700 * 114.00084 * 299.99765 * 1 2 3 18 18 H 1.08999 * 109.47089 * 239.99646 * 2 1 3 19 19 H 1.48498 * 109.99829 * 299.99936 * 3 2 1 20 20 H 1.48497 * 109.99900 * 61.31642 * 3 2 1 21 21 H 1.08002 * 122.71397 * 0.03494 * 5 4 2 22 22 H 0.97004 * 119.99967 * 179.97438 * 8 7 6 23 23 H 1.09002 * 113.61382 * 203.66038 * 11 9 8 24 24 H 1.08994 * 113.61440 * 334.56546 * 11 9 8 25 25 H 0.96694 * 114.00056 * 82.50335 * 14 12 11 26 26 H 1.09005 * 113.61649 * 220.02142 * 15 12 11 27 27 H 1.09003 * 113.61595 * 89.11522 * 15 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9314 -0.7104 1.2305 5 6 1.7622 -2.0025 1.5122 6 7 2.3021 -2.3914 2.6537 7 6 2.9150 -1.4857 3.3507 8 7 3.5392 -1.7080 4.5681 9 6 3.5363 -3.0487 5.1587 10 1 2.7104 -3.6654 4.8044 11 6 4.9027 -3.7515 5.0982 12 6 5.2115 -3.0965 6.4549 13 1 5.6720 -2.1121 6.3713 14 8 5.9032 -3.9573 7.3620 15 6 3.6924 -3.0481 6.6886 16 16 2.8411 0.0226 2.5491 17 1 -0.3933 0.4417 0.7651 18 1 1.7923 -0.5139 -0.8899 19 1 1.5616 2.4678 -1.2085 20 1 1.5879 2.4585 1.2242 21 1 1.2307 -2.6778 0.8581 22 1 3.9780 -0.9758 5.0291 23 1 4.8370 -4.8386 5.1432 24 1 5.5400 -3.3981 4.2877 25 1 6.8590 -3.9918 7.2200 26 1 3.3525 -2.1269 7.1619 27 1 3.2957 -3.9430 7.1683 There are 38 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 38 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_12122390_15704118.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:22:31 Heat of formation + Delta-G solvation = 2.086664 kcal Electronic energy + Delta-G solvation = -13640.888501 eV Core-core repulsion = 11107.351888 eV Total energy + Delta-G solvation = -2533.536613 eV No. of doubly occupied orbitals = 38 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 229.056 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.10376 -40.17917 -38.04229 -36.70043 -34.34476 -31.19078 -26.89867 -26.69727 -25.65924 -24.24054 -21.60037 -20.35370 -19.61603 -18.62559 -18.07439 -17.09129 -16.59273 -16.32317 -16.07529 -15.92145 -15.46787 -15.09782 -14.89969 -13.95678 -13.68715 -13.43206 -13.00697 -12.78248 -12.51876 -12.46090 -12.04672 -11.63558 -11.11787 -10.93986 -10.75001 -10.31167 -10.24710 -8.79072 -5.02685 -0.09953 -0.02177 0.63706 1.25065 1.54075 1.88152 1.93781 2.09154 3.27946 3.37443 3.41450 3.61247 3.63870 3.82179 3.90222 4.04783 4.53088 4.56913 4.68659 4.71142 4.73193 4.90310 4.93718 4.99924 5.20850 5.80171 6.10629 6.43560 6.86110 6.97710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.543 6.543 2 C -0.024 4.024 3 Si 0.724 3.276 4 C -0.304 4.304 5 C 0.104 3.896 6 N -0.578 5.578 7 C 0.315 3.685 8 N -0.668 5.668 9 C 0.139 3.861 10 H 0.093 0.907 11 C -0.177 4.177 12 C 0.079 3.921 13 H 0.100 0.900 14 O -0.580 6.580 15 C -0.135 4.135 16 S 0.121 5.879 17 H 0.386 0.614 18 H 0.136 0.864 19 H -0.275 1.275 20 H -0.264 1.264 21 H 0.179 0.821 22 H 0.425 0.575 23 H 0.092 0.908 24 H 0.072 0.928 25 H 0.396 0.604 26 H 0.090 0.910 27 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.243 2.472 1.265 5.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.351 6.351 2 C -0.136 4.136 3 Si 0.626 3.374 4 C -0.427 4.427 5 C -0.047 4.047 6 N -0.304 5.304 7 C -0.056 4.056 8 N -0.308 5.308 9 C 0.030 3.970 10 H 0.111 0.889 11 C -0.216 4.216 12 C 0.020 3.980 13 H 0.118 0.882 14 O -0.388 6.388 15 C -0.173 4.173 16 S 0.371 5.629 17 H 0.235 0.765 18 H 0.153 0.847 19 H -0.201 1.201 20 H -0.190 1.190 21 H 0.196 0.804 22 H 0.265 0.735 23 H 0.110 0.890 24 H 0.091 0.909 25 H 0.246 0.754 26 H 0.109 0.891 27 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 3.865 3.214 1.445 5.230 hybrid contribution -0.873 -0.609 -0.119 1.071 sum 2.992 2.605 1.326 4.183 Atomic orbital electron populations 1.86593 1.18247 1.80290 1.49983 1.24299 0.82989 1.10504 0.95816 0.94366 0.90678 0.73082 0.79246 1.25656 1.14812 0.98055 1.04192 1.21474 0.97166 0.93851 0.92221 1.66479 1.19593 1.34896 1.09440 1.23909 0.95397 0.93768 0.92488 1.43713 1.58480 1.11429 1.17204 1.21574 0.98629 0.83257 0.93506 0.88860 1.24128 0.97411 1.01443 0.98666 1.23507 0.92731 0.93606 0.88121 0.88231 1.86489 1.25969 1.68081 1.58305 1.23467 0.94837 1.04446 0.94570 1.83868 1.54850 1.09511 1.14708 0.76475 0.84689 1.20113 1.19004 0.80400 0.73489 0.88970 0.90900 0.75429 0.89150 0.88294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -1.25 12.88 -148.98 -1.92 -3.17 15 2 C -0.02 0.01 2.99 71.24 0.21 0.23 15 3 Si 0.72 -1.28 31.07 68.60 2.13 0.85 15 4 C -0.30 -0.35 5.73 24.58 0.14 -0.21 15 5 C 0.10 0.44 11.24 83.54 0.94 1.37 15 6 N -0.58 -3.72 9.83 -202.02 -1.99 -5.71 15 7 C 0.31 0.71 8.09 179.32 1.45 2.16 15 8 N -0.67 1.47 5.42 -327.90 -1.78 -0.31 15 9 C 0.14 -0.14 4.44 45.52 0.20 0.06 15 10 H 0.09 0.29 7.66 -2.39 -0.02 0.28 15 11 C -0.18 0.33 7.71 31.12 0.24 0.57 15 12 C 0.08 -0.29 5.09 31.12 0.16 -0.13 15 13 H 0.10 -0.76 8.14 -2.39 -0.02 -0.78 15 14 O -0.58 0.29 13.67 -148.98 -2.04 -1.75 15 15 C -0.13 0.38 7.66 31.12 0.24 0.62 15 16 S 0.12 -0.11 20.59 -56.49 -1.16 -1.28 15 17 H 0.39 -1.10 8.70 -74.06 -0.64 -1.75 15 18 H 0.14 -0.38 7.96 -2.39 -0.02 -0.39 15 19 H -0.28 -1.25 7.11 99.48 0.71 -0.55 15 20 H -0.26 -0.46 7.11 99.48 0.71 0.25 15 21 H 0.18 0.42 8.06 -2.91 -0.02 0.39 15 22 H 0.43 -3.10 8.83 -92.71 -0.82 -3.92 15 23 H 0.09 -0.01 8.14 -2.39 -0.02 -0.03 15 24 H 0.07 -0.11 8.14 -2.39 -0.02 -0.13 15 25 H 0.40 -3.29 9.12 -74.06 -0.68 -3.96 15 26 H 0.09 -0.44 8.14 -2.38 -0.02 -0.46 15 27 H 0.10 -0.10 8.14 -2.39 -0.02 -0.12 15 Total: 0.00 -13.83 251.64 -4.05 -17.88 By element: Atomic # 1 Polarization: -10.29 SS G_CDS: -0.88 Total: -11.18 kcal Atomic # 6 Polarization: 1.09 SS G_CDS: 3.58 Total: 4.67 kcal Atomic # 7 Polarization: -2.26 SS G_CDS: -3.76 Total: -6.02 kcal Atomic # 8 Polarization: -0.96 SS G_CDS: -3.96 Total: -4.92 kcal Atomic # 14 Polarization: -1.28 SS G_CDS: 2.13 Total: 0.85 kcal Atomic # 16 Polarization: -0.11 SS G_CDS: -1.16 Total: -1.28 kcal Total: -13.83 -4.05 -17.88 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12122390_15704118.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.964 kcal (2) G-P(sol) polarization free energy of solvation -13.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.878 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds