Wall clock time and date at job start Mon Mar 8 2021 05:22:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.33335 * 125.94973 * 2 1 4 4 C 1.50696 * 122.70913 * 0.02724 * 3 2 1 5 5 O 1.42903 * 109.47131 * 329.72730 * 4 3 2 6 6 Si 1.86305 * 109.47185 * 209.73271 * 4 3 2 7 7 N 1.32121 * 114.57890 * 179.75227 * 3 2 1 8 8 C 1.29684 * 116.86527 * 0.25294 * 7 3 2 9 9 N 1.38616 * 124.94767 * 180.02562 * 8 7 3 10 10 C 1.46494 * 120.00095 * 179.97438 * 9 8 7 11 11 H 1.09002 * 112.84932 * 23.80668 * 10 9 8 12 12 C 1.53778 * 113.61632 * 154.99452 * 10 9 8 13 13 C 1.53781 * 87.08335 * 139.98138 * 12 10 9 14 14 H 1.08996 * 113.62069 * 219.94000 * 13 12 10 15 15 O 1.42902 * 113.61129 * 89.11746 * 13 12 10 16 16 C 1.53780 * 113.61558 * 252.49508 * 10 9 8 17 17 S 1.70963 * 110.10284 * 359.97438 * 8 7 3 18 18 H 1.08998 * 109.47068 * 90.00463 * 1 2 3 19 19 H 1.09006 * 109.46612 * 209.99929 * 1 2 3 20 20 H 1.08996 * 109.47274 * 329.99404 * 1 2 3 21 21 H 1.08999 * 109.47358 * 89.73090 * 4 3 2 22 22 H 0.96700 * 114.00311 * 300.00591 * 5 4 3 23 23 H 1.48499 * 109.99670 * 58.67633 * 6 4 3 24 24 H 1.48497 * 110.00233 * 179.97438 * 6 4 3 25 25 H 0.96997 * 120.00035 * 359.97438 * 9 8 7 26 26 H 1.08992 * 113.62016 * 254.53391 * 12 10 9 27 27 H 1.09004 * 113.61286 * 25.35169 * 12 10 9 28 28 H 0.96697 * 113.99964 * 180.02562 * 15 13 12 29 29 H 1.08995 * 113.61356 * 334.56810 * 16 10 9 30 30 H 1.09003 * 113.61262 * 105.47307 * 16 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2897 1.0794 0.0000 4 6 1.7413 2.4830 0.0006 5 8 0.4839 2.5034 -0.6781 6 14 2.9356 3.6168 -0.8707 7 7 3.5850 0.8189 0.0052 8 6 3.9315 -0.4308 0.0045 9 7 5.2385 -0.8924 0.0099 10 6 5.5067 -2.3326 0.0090 11 1 4.6826 -2.9164 -0.4012 12 6 6.8775 -2.7036 -0.5808 13 6 6.9906 -3.7476 0.5427 14 1 7.9893 -3.8193 0.9733 15 8 6.4422 -5.0213 0.1977 16 6 6.0298 -2.8627 1.3544 17 16 2.5413 -1.4259 -0.0027 18 1 -0.3633 -0.0001 -1.0276 19 1 -0.3633 -0.8901 0.5139 20 1 -0.3633 0.8899 0.5139 21 1 1.6050 2.8194 1.0284 22 1 0.5298 2.2154 -1.6001 23 1 3.1546 3.1503 -2.2634 24 1 2.4061 5.0041 -0.8775 25 1 5.9755 -0.2619 0.0142 26 1 6.8204 -3.1398 -1.5780 27 1 7.6142 -1.9032 -0.5106 28 1 6.5100 -5.6821 0.9005 29 1 6.5350 -2.1063 1.9550 30 1 5.2882 -3.4274 1.9194 There are 41 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 41 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_12122390_15704122.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:22:33 Heat of formation + Delta-G solvation = -1.265922 kcal Electronic energy + Delta-G solvation = -15475.578696 eV Core-core repulsion = 12786.359085 eV Total energy + Delta-G solvation = -2689.219611 eV No. of doubly occupied orbitals = 41 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 243.072 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.13945 -40.60524 -37.92445 -36.72526 -34.54347 -32.36977 -29.22744 -27.00963 -25.91877 -25.22702 -23.99649 -21.51237 -20.27480 -19.33187 -18.31785 -17.88705 -17.36579 -16.81161 -16.60442 -16.21051 -15.61883 -15.26296 -14.83618 -14.20681 -14.11186 -13.82479 -13.67559 -13.67294 -13.32767 -13.27791 -12.76462 -12.46333 -12.28833 -11.82337 -11.62439 -11.04876 -10.98226 -10.56249 -10.40037 -9.97001 -8.58869 -4.64894 0.05803 0.22158 0.83197 1.41694 1.85086 1.91412 1.98993 2.14526 2.82928 3.20484 3.32676 3.44554 3.54475 3.58418 3.84584 4.16710 4.25093 4.38597 4.43239 4.59274 4.60873 4.74845 4.77955 4.78633 4.82107 4.95393 5.15702 5.33372 5.62695 6.27453 6.41207 6.48467 6.98355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.242 4.242 3 C 0.068 3.932 4 C -0.042 4.042 5 O -0.526 6.526 6 Si 0.721 3.279 7 N -0.539 5.539 8 C 0.320 3.680 9 N -0.684 5.684 10 C 0.133 3.867 11 H 0.111 0.889 12 C -0.137 4.137 13 C 0.082 3.918 14 H 0.079 0.921 15 O -0.551 6.551 16 C -0.186 4.186 17 S 0.100 5.900 18 H 0.068 0.932 19 H 0.060 0.940 20 H 0.091 0.909 21 H 0.124 0.876 22 H 0.376 0.624 23 H -0.268 1.268 24 H -0.261 1.261 25 H 0.413 0.587 26 H 0.088 0.912 27 H 0.104 0.896 28 H 0.386 0.614 29 H 0.098 0.902 30 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.381 -3.004 1.897 4.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.365 4.365 3 C -0.063 4.063 4 C -0.155 4.155 5 O -0.331 6.331 6 Si 0.622 3.378 7 N -0.266 5.266 8 C -0.051 4.051 9 N -0.324 5.324 10 C 0.027 3.973 11 H 0.129 0.871 12 C -0.175 4.175 13 C 0.022 3.978 14 H 0.097 0.903 15 O -0.357 6.357 16 C -0.226 4.226 17 S 0.349 5.651 18 H 0.087 0.913 19 H 0.079 0.921 20 H 0.110 0.890 21 H 0.142 0.858 22 H 0.223 0.777 23 H -0.193 1.193 24 H -0.186 1.186 25 H 0.252 0.748 26 H 0.107 0.893 27 H 0.122 0.878 28 H 0.235 0.765 29 H 0.116 0.884 30 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 3.437 -2.808 1.227 4.605 hybrid contribution -0.574 0.106 -0.076 0.588 sum 2.863 -2.702 1.151 4.102 Atomic orbital electron populations 1.20202 0.86497 1.03210 1.02570 1.25143 1.01336 0.92872 1.17166 1.20095 0.86868 0.97101 1.02201 1.24459 0.92046 0.95418 1.03530 1.86602 1.28656 1.89179 1.28709 0.93652 0.86110 0.76360 0.81709 1.65740 1.17015 1.16441 1.27396 1.23337 0.91982 0.91419 0.98391 1.44026 1.01727 1.06725 1.79902 1.22653 0.98252 0.79076 0.97278 0.87087 1.23451 0.96284 0.97712 1.00060 1.22473 0.95855 0.83497 0.96017 0.90305 1.86464 1.83477 1.21306 1.44469 1.24274 1.00445 1.00357 0.97513 1.84024 0.96525 1.10497 1.74067 0.91335 0.92140 0.89010 0.85820 0.77653 1.19294 1.18631 0.74824 0.89335 0.87765 0.76538 0.88391 0.90051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.05 8.95 36.00 0.32 0.28 16 2 C -0.24 -0.56 6.50 -36.02 -0.23 -0.80 16 3 C 0.07 0.19 5.92 -84.18 -0.50 -0.31 16 4 C -0.04 -0.07 2.82 36.00 0.10 0.04 16 5 O -0.53 -0.76 9.91 -35.23 -0.35 -1.11 16 6 Si 0.72 1.12 32.08 -169.99 -5.45 -4.33 16 7 N -0.54 -1.67 8.95 -11.36 -0.10 -1.77 16 8 C 0.32 0.65 8.24 -87.68 -0.72 -0.07 16 9 N -0.68 0.29 5.51 -55.00 -0.30 -0.01 16 10 C 0.13 -0.19 4.16 -67.12 -0.28 -0.47 16 11 H 0.11 -0.03 7.06 -51.93 -0.37 -0.40 16 12 C -0.14 0.33 7.66 -25.92 -0.20 0.13 16 13 C 0.08 -0.21 5.28 -25.92 -0.14 -0.35 16 14 H 0.08 -0.30 8.14 -51.93 -0.42 -0.73 16 15 O -0.55 0.74 13.59 -35.23 -0.48 0.26 16 16 C -0.19 0.46 7.71 -25.92 -0.20 0.26 16 17 S 0.10 0.16 21.69 -107.50 -2.33 -2.17 16 18 H 0.07 -0.01 8.14 -51.93 -0.42 -0.43 16 19 H 0.06 0.01 8.14 -51.93 -0.42 -0.41 16 20 H 0.09 0.10 6.63 -51.93 -0.34 -0.24 16 21 H 0.12 0.09 7.96 -51.93 -0.41 -0.32 16 22 H 0.38 -0.30 8.68 45.56 0.40 0.09 16 23 H -0.27 -1.18 7.11 56.52 0.40 -0.78 16 24 H -0.26 -0.98 7.11 56.52 0.40 -0.58 16 25 H 0.41 -0.69 8.85 -40.82 -0.36 -1.05 16 26 H 0.09 -0.13 8.14 -51.93 -0.42 -0.55 16 27 H 0.10 -0.42 8.12 -51.93 -0.42 -0.84 16 28 H 0.39 -2.02 9.12 45.56 0.42 -1.60 16 29 H 0.10 -0.29 8.14 -51.93 -0.42 -0.71 16 30 H 0.08 -0.17 8.14 -51.93 -0.42 -0.59 16 LS Contribution 268.45 15.07 4.05 4.05 Total: 0.00 -5.87 268.45 -9.65 -15.52 By element: Atomic # 1 Polarization: -6.31 SS G_CDS: -2.83 Total: -9.14 kcal Atomic # 6 Polarization: 0.55 SS G_CDS: -1.85 Total: -1.29 kcal Atomic # 7 Polarization: -1.38 SS G_CDS: -0.40 Total: -1.78 kcal Atomic # 8 Polarization: -0.02 SS G_CDS: -0.83 Total: -0.85 kcal Atomic # 14 Polarization: 1.12 SS G_CDS: -5.45 Total: -4.33 kcal Atomic # 16 Polarization: 0.16 SS G_CDS: -2.33 Total: -2.17 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -5.87 -9.65 -15.52 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12122390_15704122.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.251 kcal (2) G-P(sol) polarization free energy of solvation -5.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds