Wall clock time and date at job start Mon Mar 8 2021 05:22:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.33335 * 125.94973 * 2 1 4 4 C 1.50696 * 122.70913 * 0.02724 * 3 2 1 5 5 O 1.42903 * 109.47131 * 329.72730 * 4 3 2 6 6 Si 1.86305 * 109.47185 * 209.73271 * 4 3 2 7 7 N 1.32121 * 114.57890 * 179.75227 * 3 2 1 8 8 C 1.29684 * 116.86527 * 0.25294 * 7 3 2 9 9 N 1.38616 * 124.94767 * 180.02562 * 8 7 3 10 10 C 1.46494 * 120.00095 * 179.97438 * 9 8 7 11 11 H 1.09002 * 112.84932 * 23.80668 * 10 9 8 12 12 C 1.53778 * 113.61632 * 154.99452 * 10 9 8 13 13 C 1.53781 * 87.08335 * 139.98138 * 12 10 9 14 14 H 1.08996 * 113.62069 * 219.94000 * 13 12 10 15 15 O 1.42902 * 113.61129 * 89.11746 * 13 12 10 16 16 C 1.53780 * 113.61558 * 252.49508 * 10 9 8 17 17 S 1.70963 * 110.10284 * 359.97438 * 8 7 3 18 18 H 1.08998 * 109.47068 * 90.00463 * 1 2 3 19 19 H 1.09006 * 109.46612 * 209.99929 * 1 2 3 20 20 H 1.08996 * 109.47274 * 329.99404 * 1 2 3 21 21 H 1.08999 * 109.47358 * 89.73090 * 4 3 2 22 22 H 0.96700 * 114.00311 * 300.00591 * 5 4 3 23 23 H 1.48499 * 109.99670 * 58.67633 * 6 4 3 24 24 H 1.48497 * 110.00233 * 179.97438 * 6 4 3 25 25 H 0.96997 * 120.00035 * 359.97438 * 9 8 7 26 26 H 1.08992 * 113.62016 * 254.53391 * 12 10 9 27 27 H 1.09004 * 113.61286 * 25.35169 * 12 10 9 28 28 H 0.96697 * 113.99964 * 180.02562 * 15 13 12 29 29 H 1.08995 * 113.61356 * 334.56810 * 16 10 9 30 30 H 1.09003 * 113.61262 * 105.47307 * 16 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2897 1.0794 0.0000 4 6 1.7413 2.4830 0.0006 5 8 0.4839 2.5034 -0.6781 6 14 2.9356 3.6168 -0.8707 7 7 3.5850 0.8189 0.0052 8 6 3.9315 -0.4308 0.0045 9 7 5.2385 -0.8924 0.0099 10 6 5.5067 -2.3326 0.0090 11 1 4.6826 -2.9164 -0.4012 12 6 6.8775 -2.7036 -0.5808 13 6 6.9906 -3.7476 0.5427 14 1 7.9893 -3.8193 0.9733 15 8 6.4422 -5.0213 0.1977 16 6 6.0298 -2.8627 1.3544 17 16 2.5413 -1.4259 -0.0027 18 1 -0.3633 -0.0001 -1.0276 19 1 -0.3633 -0.8901 0.5139 20 1 -0.3633 0.8899 0.5139 21 1 1.6050 2.8194 1.0284 22 1 0.5298 2.2154 -1.6001 23 1 3.1546 3.1503 -2.2634 24 1 2.4061 5.0041 -0.8775 25 1 5.9755 -0.2619 0.0142 26 1 6.8204 -3.1398 -1.5780 27 1 7.6142 -1.9032 -0.5106 28 1 6.5100 -5.6821 0.9005 29 1 6.5350 -2.1063 1.9550 30 1 5.2882 -3.4274 1.9194 There are 41 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 41 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_12122390_15704122.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:22:33 Heat of formation + Delta-G solvation = -0.986539 kcal Electronic energy + Delta-G solvation = -15475.566581 eV Core-core repulsion = 12786.359085 eV Total energy + Delta-G solvation = -2689.207496 eV No. of doubly occupied orbitals = 41 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 243.072 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.18297 -40.51684 -37.99896 -36.65355 -34.49772 -32.41755 -29.31871 -26.81136 -25.93758 -25.23729 -24.02873 -21.44414 -20.26799 -19.34751 -18.28078 -17.90955 -17.40524 -16.75623 -16.65081 -16.10340 -15.76903 -15.32999 -14.68193 -14.33006 -14.15436 -13.86659 -13.67821 -13.50686 -13.34602 -13.19789 -12.83216 -12.45891 -12.35518 -12.00687 -11.49769 -11.02642 -10.82001 -10.69727 -10.49893 -10.08809 -8.65045 -4.80365 -0.06302 0.12309 0.71428 1.27762 1.65609 1.80726 1.91842 1.97814 3.09234 3.26719 3.38487 3.48751 3.62764 3.75771 4.00634 4.12468 4.30570 4.41404 4.53290 4.67920 4.75724 4.79450 4.84443 4.94340 4.96647 4.99950 5.12760 5.28312 5.64693 6.28893 6.42199 6.85513 6.88579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C -0.256 4.256 3 C 0.056 3.944 4 C -0.041 4.041 5 O -0.532 6.532 6 Si 0.783 3.217 7 N -0.557 5.557 8 C 0.312 3.688 9 N -0.675 5.675 10 C 0.126 3.874 11 H 0.098 0.902 12 C -0.135 4.135 13 C 0.083 3.917 14 H 0.097 0.903 15 O -0.573 6.573 16 C -0.179 4.179 17 S 0.105 5.895 18 H 0.076 0.924 19 H 0.064 0.936 20 H 0.088 0.912 21 H 0.134 0.866 22 H 0.384 0.616 23 H -0.307 1.307 24 H -0.290 1.290 25 H 0.419 0.581 26 H 0.077 0.923 27 H 0.122 0.878 28 H 0.401 0.599 29 H 0.106 0.894 30 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.921 -3.384 2.427 5.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.379 4.379 3 C -0.074 4.074 4 C -0.154 4.154 5 O -0.339 6.339 6 Si 0.688 3.312 7 N -0.284 5.284 8 C -0.060 4.060 9 N -0.315 5.315 10 C 0.021 3.979 11 H 0.116 0.884 12 C -0.173 4.173 13 C 0.023 3.977 14 H 0.114 0.886 15 O -0.382 6.382 16 C -0.218 4.218 17 S 0.354 5.646 18 H 0.095 0.905 19 H 0.083 0.917 20 H 0.106 0.894 21 H 0.151 0.849 22 H 0.234 0.766 23 H -0.235 1.235 24 H -0.218 1.218 25 H 0.259 0.741 26 H 0.095 0.905 27 H 0.140 0.860 28 H 0.252 0.748 29 H 0.125 0.875 30 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 3.996 -3.213 1.778 5.427 hybrid contribution -0.725 0.183 -0.287 0.801 sum 3.270 -3.031 1.491 4.701 Atomic orbital electron populations 1.20202 0.85601 1.03227 1.03080 1.25385 1.02124 0.93070 1.17282 1.20276 0.87017 0.97627 1.02493 1.24499 0.91912 0.94904 1.04063 1.86580 1.28616 1.89185 1.29514 0.92897 0.85218 0.73864 0.79179 1.65757 1.17255 1.16972 1.28465 1.23590 0.92919 0.91374 0.98109 1.44139 1.01086 1.07304 1.78980 1.22752 0.98456 0.78298 0.98431 0.88426 1.23507 0.95916 0.98316 0.99538 1.22534 0.96475 0.82993 0.95665 0.88556 1.86426 1.83781 1.22184 1.45803 1.24230 1.00327 1.00400 0.96855 1.83953 0.96323 1.10203 1.74120 0.90549 0.91668 0.89369 0.84890 0.76636 1.23497 1.21763 0.74080 0.90461 0.85962 0.74841 0.87531 0.90516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.09 8.95 71.23 0.64 0.55 16 2 C -0.26 -1.26 6.50 24.58 0.16 -1.10 16 3 C 0.06 0.33 5.92 41.40 0.24 0.58 16 4 C -0.04 -0.14 2.82 71.23 0.20 0.06 16 5 O -0.53 -1.63 9.91 -148.98 -1.48 -3.10 16 6 Si 0.78 3.04 32.08 68.60 2.20 5.25 16 7 N -0.56 -3.64 8.95 -189.86 -1.70 -5.34 16 8 C 0.31 1.36 8.24 179.32 1.48 2.84 16 9 N -0.67 0.58 5.51 -327.91 -1.81 -1.22 16 10 C 0.13 -0.35 4.16 45.52 0.19 -0.16 16 11 H 0.10 0.01 7.06 -2.39 -0.02 -0.01 16 12 C -0.13 0.71 7.66 31.12 0.24 0.95 16 13 C 0.08 -0.50 5.28 31.12 0.16 -0.33 16 14 H 0.10 -0.90 8.14 -2.39 -0.02 -0.92 16 15 O -0.57 1.68 13.59 -148.98 -2.02 -0.34 16 16 C -0.18 0.98 7.71 31.12 0.24 1.22 16 17 S 0.11 0.38 21.69 -56.49 -1.23 -0.84 16 18 H 0.08 -0.03 8.14 -2.39 -0.02 -0.05 16 19 H 0.06 0.02 8.14 -2.38 -0.02 0.00 16 20 H 0.09 0.20 6.63 -2.39 -0.02 0.19 16 21 H 0.13 0.17 7.96 -2.39 -0.02 0.15 16 22 H 0.38 -0.49 8.68 -74.06 -0.64 -1.13 16 23 H -0.31 -3.21 7.11 99.48 0.71 -2.50 16 24 H -0.29 -2.48 7.11 99.48 0.71 -1.78 16 25 H 0.42 -1.54 8.85 -92.71 -0.82 -2.36 16 26 H 0.08 -0.21 8.14 -2.39 -0.02 -0.23 16 27 H 0.12 -1.12 8.12 -2.38 -0.02 -1.14 16 28 H 0.40 -4.31 9.12 -74.06 -0.68 -4.99 16 29 H 0.11 -0.75 8.14 -2.39 -0.02 -0.77 16 30 H 0.08 -0.33 8.14 -2.39 -0.02 -0.35 16 Total: 0.00 -13.50 268.45 -3.39 -16.89 By element: Atomic # 1 Polarization: -14.96 SS G_CDS: -0.91 Total: -15.87 kcal Atomic # 6 Polarization: 1.04 SS G_CDS: 3.55 Total: 4.60 kcal Atomic # 7 Polarization: -3.06 SS G_CDS: -3.51 Total: -6.57 kcal Atomic # 8 Polarization: 0.05 SS G_CDS: -3.50 Total: -3.45 kcal Atomic # 14 Polarization: 3.04 SS G_CDS: 2.20 Total: 5.25 kcal Atomic # 16 Polarization: 0.38 SS G_CDS: -1.23 Total: -0.84 kcal Total: -13.50 -3.39 -16.89 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12122390_15704122.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.901 kcal (2) G-P(sol) polarization free energy of solvation -13.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds