Wall clock time and date at job start Mon Mar 8 2021 06:32:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86302 * 1 3 3 C 1.86301 * 109.46967 * 2 1 4 4 C 1.86302 * 109.47097 * 240.00154 * 2 1 3 5 5 C 1.86799 * 109.47144 * 119.99848 * 2 1 3 6 6 C 1.38235 * 119.99718 * 90.00178 * 5 2 1 7 7 C 1.38234 * 119.99825 * 180.02562 * 6 5 2 8 8 C 1.38238 * 120.00071 * 0.02562 * 7 6 5 9 9 C 1.50696 * 120.00111 * 179.97438 * 8 7 6 10 10 C 1.53002 * 109.47300 * 89.99479 * 9 8 7 11 11 N 1.46506 * 109.47035 * 179.97438 * 10 9 8 12 12 C 1.38404 * 119.99573 * 179.97438 * 11 10 9 13 13 N 1.32494 * 119.22406 * 359.73730 * 12 11 10 14 14 C 1.32271 * 120.74260 * 179.71489 * 13 12 11 15 15 C 1.38602 * 119.20008 * 0.54592 * 14 13 12 16 16 C 1.50701 * 120.72368 * 179.70858 * 15 14 13 17 17 O 1.42899 * 109.47124 * 245.01809 * 16 15 14 18 18 Si 1.86301 * 109.46946 * 5.01891 * 16 15 14 19 19 H 1.48500 * 109.46959 * 60.00195 * 18 16 15 20 20 H 1.48504 * 109.46747 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47202 * 299.99855 * 18 16 15 22 22 C 1.38603 * 118.55451 * 359.72628 * 15 14 13 23 23 N 1.32279 * 119.20335 * 0.02562 * 22 15 14 24 24 C 1.38233 * 119.99872 * 0.24890 * 8 7 6 25 25 C 1.38232 * 120.00094 * 359.49261 * 24 8 7 26 26 H 1.09004 * 109.47223 * 299.99592 * 1 2 3 27 27 H 1.09001 * 109.47256 * 60.00095 * 1 2 3 28 28 H 1.08997 * 109.47152 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47487 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.47055 * 300.00028 * 3 2 1 31 31 H 1.09001 * 109.47061 * 59.99700 * 3 2 1 32 32 H 1.08997 * 109.46842 * 299.99849 * 4 2 1 33 33 H 1.09001 * 109.46814 * 60.00034 * 4 2 1 34 34 H 1.08996 * 109.46874 * 179.97438 * 4 2 1 35 35 H 1.07997 * 120.00225 * 0.02562 * 6 5 2 36 36 H 1.08003 * 120.00104 * 179.97438 * 7 6 5 37 37 H 1.09004 * 109.47043 * 329.99653 * 9 8 7 38 38 H 1.09004 * 109.47476 * 209.99727 * 9 8 7 39 39 H 1.09004 * 109.46930 * 60.00105 * 10 9 8 40 40 H 1.09000 * 109.47312 * 300.00049 * 10 9 8 41 41 H 0.96999 * 120.00080 * 0.02562 * 11 10 9 42 42 H 1.08002 * 120.39909 * 180.25018 * 14 13 12 43 43 H 1.09004 * 109.46946 * 125.01841 * 16 15 14 44 44 H 0.96708 * 113.99616 * 60.00009 * 17 16 15 45 45 H 1.08001 * 120.40029 * 179.97438 * 22 15 14 46 46 H 1.08006 * 119.99928 * 179.73274 * 24 8 7 47 47 H 1.08002 * 120.00247 * 180.22681 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4840 -0.8782 -1.5212 5 6 2.4857 -0.8805 1.5252 6 6 2.7161 -2.2431 1.4910 7 6 3.1764 -2.8948 2.6198 8 6 3.4057 -2.1841 3.7830 9 6 3.9070 -2.8946 5.0138 10 6 5.4370 -2.8948 5.0152 11 7 5.9242 -3.5851 6.2120 12 6 7.2848 -3.7120 6.4320 13 7 8.1328 -3.2080 5.5474 14 6 9.4390 -3.3073 5.7304 15 6 9.9164 -3.9575 6.8575 16 6 11.3979 -4.0961 7.0968 17 8 11.7612 -5.4772 7.0470 18 14 12.3294 -3.1609 5.7821 19 1 11.9518 -1.7257 5.8340 20 1 13.7892 -3.2981 6.0176 21 1 11.9899 -3.7142 4.4466 22 6 9.0017 -4.4777 7.7596 23 7 7.7083 -4.3396 7.5193 24 6 3.1699 -0.8225 3.8189 25 6 2.7147 -0.1698 2.6886 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 3.5739 1.7566 -0.0005 30 1 2.1206 2.2703 -0.8900 31 1 2.1206 2.2703 0.8900 32 1 2.1207 -1.9058 -1.5211 33 1 2.1207 -0.3643 -2.4111 34 1 3.5740 -0.8778 -1.5214 35 1 2.5365 -2.7985 0.5823 36 1 3.3560 -3.9595 2.5932 37 1 3.5436 -3.9223 5.0134 38 1 3.5429 -2.3809 5.9036 39 1 5.8004 -1.8671 5.0156 40 1 5.8011 -3.4085 4.1254 41 1 5.2933 -3.9537 6.8499 42 1 10.1253 -2.8910 5.0078 43 1 11.6471 -3.6900 8.0772 44 1 11.5676 -5.9046 6.2013 45 1 9.3409 -4.9904 8.6476 46 1 3.3450 -0.2679 4.7290 47 1 2.5340 0.8946 2.7155 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_12221184_12175864.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:32:05 Heat of formation + Delta-G solvation = -3.558204 kcal Electronic energy + Delta-G solvation = -24506.784479 eV Core-core repulsion = 21005.609120 eV Total energy + Delta-G solvation = -3501.175359 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 331.158 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.04177 -40.19281 -38.30121 -37.17592 -34.69500 -34.21585 -32.21883 -31.83954 -29.72256 -29.04990 -28.44924 -28.41785 -26.48026 -25.94607 -24.18956 -23.44193 -22.99986 -21.79753 -19.46901 -18.73942 -18.06665 -17.40330 -16.81523 -16.45122 -16.29397 -16.07188 -16.04288 -15.71039 -15.58856 -14.80584 -14.76092 -14.32389 -14.31531 -14.26838 -14.13402 -14.06600 -13.85132 -13.76812 -13.32514 -13.27032 -13.16717 -13.11067 -12.79595 -12.74014 -12.67489 -12.26864 -12.22075 -11.88468 -11.79190 -11.68172 -11.28238 -11.01828 -10.90967 -10.80392 -10.58747 -9.96974 -9.75554 -9.54482 -9.09282 0.08294 0.19304 0.31021 0.57190 1.08977 1.36666 1.44462 1.72143 1.81714 1.84894 1.86346 1.96795 2.54966 2.86028 2.92834 3.16263 3.41905 3.60455 3.71311 3.75174 3.82454 3.96139 4.00268 4.16170 4.18390 4.21396 4.50217 4.54259 4.57009 4.62998 4.69587 4.70188 4.72987 4.73839 4.74851 4.74908 4.76212 4.88916 4.91383 5.08252 5.20198 5.24195 5.41904 5.50062 5.50201 5.53048 5.65711 5.69453 5.77470 6.01647 6.16589 6.41872 6.48913 7.31827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.449 4.449 2 Si 1.059 2.941 3 C -0.450 4.450 4 C -0.450 4.450 5 C -0.371 4.371 6 C -0.086 4.086 7 C -0.125 4.125 8 C -0.073 4.073 9 C -0.095 4.095 10 C 0.143 3.857 11 N -0.697 5.697 12 C 0.567 3.433 13 N -0.562 5.562 14 C 0.192 3.808 15 C -0.296 4.296 16 C -0.058 4.058 17 O -0.539 6.539 18 Si 0.939 3.061 19 H -0.248 1.248 20 H -0.248 1.248 21 H -0.250 1.250 22 C 0.226 3.774 23 N -0.569 5.569 24 C -0.125 4.125 25 C -0.086 4.086 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.120 0.880 36 H 0.118 0.882 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.415 0.585 42 H 0.160 0.840 43 H 0.120 0.880 44 H 0.376 0.624 45 H 0.173 0.827 46 H 0.118 0.882 47 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.682 0.933 -1.568 1.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.557 4.557 2 Si 1.250 2.750 3 C -0.557 4.557 4 C -0.557 4.557 5 C -0.412 4.412 6 C -0.104 4.104 7 C -0.143 4.143 8 C -0.073 4.073 9 C -0.132 4.132 10 C 0.019 3.981 11 N -0.334 5.334 12 C 0.210 3.790 13 N -0.284 5.284 14 C 0.024 3.976 15 C -0.304 4.304 16 C -0.171 4.171 17 O -0.344 6.344 18 Si 0.761 3.239 19 H -0.172 1.172 20 H -0.171 1.171 21 H -0.173 1.173 22 C 0.058 3.942 23 N -0.291 5.291 24 C -0.143 4.143 25 C -0.104 4.104 26 H 0.088 0.912 27 H 0.089 0.911 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.138 0.862 36 H 0.136 0.864 37 H 0.099 0.901 38 H 0.099 0.901 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.253 0.747 42 H 0.177 0.823 43 H 0.137 0.863 44 H 0.223 0.777 45 H 0.190 0.810 46 H 0.137 0.863 47 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -1.126 1.675 -1.890 2.765 hybrid contribution 0.238 -0.628 0.364 0.764 sum -0.889 1.047 -1.526 2.053 Atomic orbital electron populations 1.26129 1.20551 1.04537 1.04447 0.78175 0.66812 0.66118 0.63847 1.26136 1.06457 1.18612 1.04519 1.26135 1.06456 1.08031 1.15100 1.27364 1.04185 0.99518 1.10183 1.21065 0.97046 0.94642 0.97684 1.21133 1.00398 0.99722 0.93022 1.19581 0.99246 0.93941 0.94562 1.20802 0.94306 1.01478 0.96642 1.21315 0.92528 0.97587 0.86711 1.44172 1.01233 1.61434 1.26530 1.19369 0.87094 0.86977 0.85513 1.67933 1.03520 1.25388 1.31580 1.22813 0.91097 0.90045 0.93673 1.21683 0.99054 1.09425 1.00231 1.24623 0.92478 0.89034 1.10922 1.86526 1.85405 1.22006 1.40430 0.85834 0.80674 0.79705 0.77677 1.17158 1.17147 1.17322 1.22851 0.86049 0.88940 0.96408 1.68001 1.18332 1.21705 1.21024 1.21133 1.00407 0.93937 0.98798 1.21067 0.97066 0.99597 0.92707 0.91206 0.91075 0.91204 0.91067 0.90997 0.91206 0.91205 0.90996 0.91068 0.86179 0.86352 0.90129 0.90126 0.91131 0.91121 0.74723 0.82279 0.86256 0.77671 0.81035 0.86350 0.86179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.62 8.65 101.05 0.87 1.49 16 2 Si 1.06 -2.54 12.32 -169.99 -2.09 -4.63 16 3 C -0.45 0.74 8.53 101.05 0.86 1.60 16 4 C -0.45 0.75 8.53 101.05 0.86 1.61 16 5 C -0.37 0.07 4.59 -39.58 -0.18 -0.12 16 6 C -0.09 -0.02 9.29 -39.58 -0.37 -0.39 16 7 C -0.12 -0.07 9.70 -39.58 -0.38 -0.45 16 8 C -0.07 -0.03 5.13 -104.63 -0.54 -0.56 16 9 C -0.09 0.11 5.46 -27.88 -0.15 -0.04 16 10 C 0.14 0.02 5.63 -4.04 -0.02 0.00 16 11 N -0.70 -0.69 5.70 -62.30 -0.36 -1.05 16 12 C 0.57 1.80 8.43 -322.80 -2.72 -0.92 16 13 N -0.56 -1.86 9.59 -13.93 -0.13 -1.99 16 14 C 0.19 0.26 9.92 -17.23 -0.17 0.09 16 15 C -0.30 -0.09 5.36 -104.35 -0.56 -0.65 16 16 C -0.06 0.08 2.83 36.01 0.10 0.18 16 17 O -0.54 0.34 12.85 -35.23 -0.45 -0.12 16 18 Si 0.94 -1.31 25.21 -169.99 -4.28 -5.59 16 19 H -0.25 0.17 7.11 56.52 0.40 0.57 16 20 H -0.25 -0.02 7.11 56.52 0.40 0.38 16 21 H -0.25 0.31 7.05 56.52 0.40 0.71 16 22 C 0.23 0.27 10.99 -17.22 -0.19 0.08 16 23 N -0.57 -1.77 10.46 -13.93 -0.15 -1.91 16 24 C -0.12 -0.07 9.70 -39.59 -0.38 -0.45 16 25 C -0.09 -0.02 9.29 -39.58 -0.37 -0.39 16 26 H 0.07 -0.08 7.96 -51.93 -0.41 -0.49 16 27 H 0.07 -0.11 7.96 -51.93 -0.41 -0.53 16 28 H 0.07 -0.08 7.96 -51.93 -0.41 -0.49 16 29 H 0.07 -0.09 7.96 -51.93 -0.41 -0.51 16 30 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 31 H 0.07 -0.13 7.69 -51.93 -0.40 -0.52 16 32 H 0.07 -0.13 7.69 -51.93 -0.40 -0.52 16 33 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 34 H 0.07 -0.09 7.96 -51.93 -0.41 -0.51 16 35 H 0.12 -0.17 7.43 -52.49 -0.39 -0.56 16 36 H 0.12 -0.08 8.06 -52.48 -0.42 -0.51 16 37 H 0.08 -0.14 8.09 -51.93 -0.42 -0.56 16 38 H 0.08 -0.14 8.08 -51.93 -0.42 -0.56 16 39 H 0.07 0.08 8.14 -51.93 -0.42 -0.34 16 40 H 0.07 0.08 8.14 -51.93 -0.42 -0.34 16 41 H 0.42 -0.19 8.59 -40.82 -0.35 -0.54 16 42 H 0.16 -0.10 5.03 -52.49 -0.26 -0.36 16 43 H 0.12 -0.29 7.96 -51.93 -0.41 -0.70 16 44 H 0.38 -1.32 8.70 45.56 0.40 -0.93 16 45 H 0.17 -0.16 8.06 -52.49 -0.42 -0.59 16 46 H 0.12 -0.08 8.06 -52.48 -0.42 -0.51 16 47 H 0.12 -0.17 7.43 -52.49 -0.39 -0.56 16 LS Contribution 392.32 15.07 5.91 5.91 Total: 0.00 -6.61 392.32 -11.75 -18.36 By element: Atomic # 1 Polarization: -3.20 SS G_CDS: -6.86 Total: -10.06 kcal Atomic # 6 Polarization: 4.42 SS G_CDS: -3.34 Total: 1.08 kcal Atomic # 7 Polarization: -4.32 SS G_CDS: -0.63 Total: -4.95 kcal Atomic # 8 Polarization: 0.34 SS G_CDS: -0.45 Total: -0.12 kcal Atomic # 14 Polarization: -3.85 SS G_CDS: -6.38 Total: -10.23 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -6.61 -11.75 -18.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12221184_12175864.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.804 kcal (2) G-P(sol) polarization free energy of solvation -6.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds