Wall clock time and date at job start Mon Mar 8 2021 06:32:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86302 * 1 3 3 C 1.86301 * 109.46967 * 2 1 4 4 C 1.86302 * 109.47097 * 240.00154 * 2 1 3 5 5 C 1.86799 * 109.47144 * 119.99848 * 2 1 3 6 6 C 1.38235 * 119.99718 * 90.00178 * 5 2 1 7 7 C 1.38234 * 119.99825 * 180.02562 * 6 5 2 8 8 C 1.38238 * 120.00071 * 0.02562 * 7 6 5 9 9 C 1.50696 * 120.00111 * 179.97438 * 8 7 6 10 10 C 1.53002 * 109.47300 * 89.99479 * 9 8 7 11 11 N 1.46506 * 109.47035 * 179.97438 * 10 9 8 12 12 C 1.38404 * 119.99573 * 179.97438 * 11 10 9 13 13 N 1.32494 * 119.22406 * 359.73730 * 12 11 10 14 14 C 1.32271 * 120.74260 * 179.71489 * 13 12 11 15 15 C 1.38602 * 119.20008 * 0.54592 * 14 13 12 16 16 C 1.50701 * 120.72368 * 179.70858 * 15 14 13 17 17 O 1.42899 * 109.47124 * 245.01809 * 16 15 14 18 18 Si 1.86301 * 109.46946 * 5.01891 * 16 15 14 19 19 H 1.48500 * 109.46959 * 60.00195 * 18 16 15 20 20 H 1.48504 * 109.46747 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47202 * 299.99855 * 18 16 15 22 22 C 1.38603 * 118.55451 * 359.72628 * 15 14 13 23 23 N 1.32279 * 119.20335 * 0.02562 * 22 15 14 24 24 C 1.38233 * 119.99872 * 0.24890 * 8 7 6 25 25 C 1.38232 * 120.00094 * 359.49261 * 24 8 7 26 26 H 1.09004 * 109.47223 * 299.99592 * 1 2 3 27 27 H 1.09001 * 109.47256 * 60.00095 * 1 2 3 28 28 H 1.08997 * 109.47152 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47487 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.47055 * 300.00028 * 3 2 1 31 31 H 1.09001 * 109.47061 * 59.99700 * 3 2 1 32 32 H 1.08997 * 109.46842 * 299.99849 * 4 2 1 33 33 H 1.09001 * 109.46814 * 60.00034 * 4 2 1 34 34 H 1.08996 * 109.46874 * 179.97438 * 4 2 1 35 35 H 1.07997 * 120.00225 * 0.02562 * 6 5 2 36 36 H 1.08003 * 120.00104 * 179.97438 * 7 6 5 37 37 H 1.09004 * 109.47043 * 329.99653 * 9 8 7 38 38 H 1.09004 * 109.47476 * 209.99727 * 9 8 7 39 39 H 1.09004 * 109.46930 * 60.00105 * 10 9 8 40 40 H 1.09000 * 109.47312 * 300.00049 * 10 9 8 41 41 H 0.96999 * 120.00080 * 0.02562 * 11 10 9 42 42 H 1.08002 * 120.39909 * 180.25018 * 14 13 12 43 43 H 1.09004 * 109.46946 * 125.01841 * 16 15 14 44 44 H 0.96708 * 113.99616 * 60.00009 * 17 16 15 45 45 H 1.08001 * 120.40029 * 179.97438 * 22 15 14 46 46 H 1.08006 * 119.99928 * 179.73274 * 24 8 7 47 47 H 1.08002 * 120.00247 * 180.22681 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4840 -0.8782 -1.5212 5 6 2.4857 -0.8805 1.5252 6 6 2.7161 -2.2431 1.4910 7 6 3.1764 -2.8948 2.6198 8 6 3.4057 -2.1841 3.7830 9 6 3.9070 -2.8946 5.0138 10 6 5.4370 -2.8948 5.0152 11 7 5.9242 -3.5851 6.2120 12 6 7.2848 -3.7120 6.4320 13 7 8.1328 -3.2080 5.5474 14 6 9.4390 -3.3073 5.7304 15 6 9.9164 -3.9575 6.8575 16 6 11.3979 -4.0961 7.0968 17 8 11.7612 -5.4772 7.0470 18 14 12.3294 -3.1609 5.7821 19 1 11.9518 -1.7257 5.8340 20 1 13.7892 -3.2981 6.0176 21 1 11.9899 -3.7142 4.4466 22 6 9.0017 -4.4777 7.7596 23 7 7.7083 -4.3396 7.5193 24 6 3.1699 -0.8225 3.8189 25 6 2.7147 -0.1698 2.6886 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 3.5739 1.7566 -0.0005 30 1 2.1206 2.2703 -0.8900 31 1 2.1206 2.2703 0.8900 32 1 2.1207 -1.9058 -1.5211 33 1 2.1207 -0.3643 -2.4111 34 1 3.5740 -0.8778 -1.5214 35 1 2.5365 -2.7985 0.5823 36 1 3.3560 -3.9595 2.5932 37 1 3.5436 -3.9223 5.0134 38 1 3.5429 -2.3809 5.9036 39 1 5.8004 -1.8671 5.0156 40 1 5.8011 -3.4085 4.1254 41 1 5.2933 -3.9537 6.8499 42 1 10.1253 -2.8910 5.0078 43 1 11.6471 -3.6900 8.0772 44 1 11.5676 -5.9046 6.2013 45 1 9.3409 -4.9904 8.6476 46 1 3.3450 -0.2679 4.7290 47 1 2.5340 0.8946 2.7155 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_12221184_12175864.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:32:04 Heat of formation + Delta-G solvation = 5.026554 kcal Electronic energy + Delta-G solvation = -24506.412216 eV Core-core repulsion = 21005.609120 eV Total energy + Delta-G solvation = -3500.803096 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 331.158 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.13388 -40.15478 -38.27895 -37.17555 -34.80897 -34.21269 -32.24260 -31.80432 -29.61847 -29.00891 -28.29885 -28.27816 -26.46929 -26.02343 -24.19787 -23.41320 -23.05492 -21.76864 -19.52886 -18.80141 -18.04366 -17.35602 -16.85501 -16.41533 -16.27826 -16.07544 -16.05639 -15.69494 -15.58620 -14.83298 -14.76017 -14.32489 -14.26199 -14.15266 -14.04220 -13.96564 -13.73581 -13.69901 -13.21421 -13.15082 -13.12258 -12.97783 -12.76845 -12.69667 -12.59769 -12.21531 -12.20854 -11.92459 -11.83537 -11.66856 -11.33059 -10.89139 -10.76100 -10.72741 -10.56953 -10.04639 -9.75078 -9.51409 -9.16635 -0.00771 0.10177 0.33903 0.57624 1.19032 1.46535 1.52940 1.76855 1.87694 1.93789 2.02907 2.11453 2.67856 2.75071 2.94920 3.11009 3.54601 3.59012 3.66792 3.77729 3.87968 3.99241 4.01127 4.20774 4.21238 4.21725 4.52118 4.59424 4.65164 4.67264 4.70908 4.82900 4.83678 4.85898 4.87798 4.88872 4.89879 4.92611 4.93718 5.12241 5.22403 5.23854 5.50046 5.58644 5.62104 5.66569 5.68531 5.70477 5.72467 5.96854 6.20626 6.35381 6.71219 7.21881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.462 4.462 2 Si 1.124 2.876 3 C -0.462 4.462 4 C -0.462 4.462 5 C -0.384 4.384 6 C -0.101 4.101 7 C -0.140 4.140 8 C -0.082 4.082 9 C -0.084 4.084 10 C 0.153 3.847 11 N -0.693 5.693 12 C 0.550 3.450 13 N -0.583 5.583 14 C 0.180 3.820 15 C -0.286 4.286 16 C -0.052 4.052 17 O -0.550 6.550 18 Si 0.970 3.030 19 H -0.258 1.258 20 H -0.268 1.268 21 H -0.251 1.251 22 C 0.218 3.782 23 N -0.587 5.587 24 C -0.140 4.140 25 C -0.101 4.101 26 H 0.066 0.934 27 H 0.074 0.926 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.067 0.933 35 H 0.134 0.866 36 H 0.126 0.874 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.059 0.941 40 H 0.059 0.941 41 H 0.421 0.579 42 H 0.175 0.825 43 H 0.133 0.867 44 H 0.388 0.612 45 H 0.192 0.808 46 H 0.126 0.874 47 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.613 0.888 -1.597 1.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.569 4.569 2 Si 1.311 2.689 3 C -0.569 4.569 4 C -0.569 4.569 5 C -0.424 4.424 6 C -0.119 4.119 7 C -0.158 4.158 8 C -0.083 4.083 9 C -0.122 4.122 10 C 0.029 3.971 11 N -0.330 5.330 12 C 0.193 3.807 13 N -0.307 5.307 14 C 0.014 3.986 15 C -0.294 4.294 16 C -0.164 4.164 17 O -0.357 6.357 18 Si 0.794 3.206 19 H -0.182 1.182 20 H -0.193 1.193 21 H -0.175 1.175 22 C 0.050 3.950 23 N -0.309 5.309 24 C -0.158 4.158 25 C -0.119 4.119 26 H 0.085 0.915 27 H 0.093 0.907 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.093 0.907 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.093 0.907 34 H 0.086 0.914 35 H 0.152 0.848 36 H 0.144 0.856 37 H 0.107 0.893 38 H 0.107 0.893 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.259 0.741 42 H 0.191 0.809 43 H 0.150 0.850 44 H 0.237 0.763 45 H 0.208 0.792 46 H 0.144 0.856 47 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -1.060 1.616 -1.915 2.721 hybrid contribution 0.259 -0.620 0.368 0.766 sum -0.801 0.996 -1.547 2.007 Atomic orbital electron populations 1.26286 1.21685 1.04392 1.04495 0.77188 0.65172 0.64640 0.61904 1.26277 1.06343 1.19481 1.04785 1.26275 1.06346 1.08450 1.15807 1.27885 1.03757 0.99646 1.11118 1.21362 0.97106 0.95157 0.98227 1.21372 1.00689 1.00350 0.93359 1.19751 0.99386 0.94115 0.95056 1.20719 0.93109 1.01914 0.96419 1.21181 0.93302 0.96571 0.86051 1.44208 1.00808 1.61266 1.26747 1.19625 0.87775 0.87475 0.85813 1.67943 1.04404 1.26180 1.32128 1.23152 0.90844 0.90217 0.94435 1.21808 0.99813 1.08348 0.99420 1.24649 0.91105 0.88921 1.11740 1.86502 1.85382 1.22228 1.41598 0.85393 0.78973 0.78833 0.77398 1.18196 1.19264 1.17456 1.23259 0.85701 0.88878 0.97169 1.68033 1.19361 1.22284 1.21215 1.21371 1.00706 0.94284 0.99422 1.21362 0.97133 1.00497 0.92867 0.91463 0.90731 0.91456 0.91390 0.90716 0.90993 0.90983 0.90714 0.91385 0.84827 0.85589 0.89326 0.89332 0.92296 0.92258 0.74070 0.80883 0.84969 0.76308 0.79157 0.85600 0.84839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 1.36 8.65 113.37 0.98 2.34 16 2 Si 1.12 -5.61 12.32 68.60 0.85 -4.77 16 3 C -0.46 1.63 8.53 113.37 0.97 2.60 16 4 C -0.46 1.65 8.53 113.37 0.97 2.62 16 5 C -0.38 0.03 4.59 22.27 0.10 0.14 16 6 C -0.10 -0.09 9.29 22.27 0.21 0.11 16 7 C -0.14 -0.25 9.70 22.27 0.22 -0.03 16 8 C -0.08 -0.12 5.13 -19.87 -0.10 -0.23 16 9 C -0.08 0.15 5.46 29.85 0.16 0.32 16 10 C 0.15 0.22 5.63 86.38 0.49 0.70 16 11 N -0.69 -1.99 5.70 -351.02 -2.00 -3.99 16 12 C 0.55 3.96 8.43 261.48 2.20 6.17 16 13 N -0.58 -4.36 9.59 -197.99 -1.90 -6.26 16 14 C 0.18 0.54 9.92 84.71 0.84 1.38 16 15 C -0.29 -0.11 5.36 -19.69 -0.11 -0.22 16 16 C -0.05 0.18 2.83 71.24 0.20 0.38 16 17 O -0.55 1.15 12.85 -148.98 -1.91 -0.76 16 18 Si 0.97 -2.96 25.21 68.60 1.73 -1.23 16 19 H -0.26 0.37 7.11 99.48 0.71 1.08 16 20 H -0.27 -0.09 7.11 99.48 0.71 0.61 16 21 H -0.25 0.74 7.05 99.48 0.70 1.44 16 22 C 0.22 0.49 10.99 84.71 0.93 1.42 16 23 N -0.59 -3.91 10.46 -197.98 -2.07 -5.98 16 24 C -0.14 -0.25 9.70 22.27 0.22 -0.04 16 25 C -0.10 -0.10 9.29 22.27 0.21 0.11 16 26 H 0.07 -0.15 7.96 -2.39 -0.02 -0.17 16 27 H 0.07 -0.26 7.96 -2.39 -0.02 -0.28 16 28 H 0.07 -0.15 7.96 -2.39 -0.02 -0.17 16 29 H 0.07 -0.18 7.96 -2.39 -0.02 -0.20 16 30 H 0.07 -0.29 7.96 -2.39 -0.02 -0.31 16 31 H 0.07 -0.28 7.69 -2.39 -0.02 -0.30 16 32 H 0.07 -0.28 7.69 -2.39 -0.02 -0.30 16 33 H 0.07 -0.30 7.96 -2.39 -0.02 -0.32 16 34 H 0.07 -0.18 7.96 -2.39 -0.02 -0.20 16 35 H 0.13 -0.37 7.43 -2.91 -0.02 -0.40 16 36 H 0.13 -0.10 8.06 -2.91 -0.02 -0.12 16 37 H 0.09 -0.30 8.09 -2.38 -0.02 -0.32 16 38 H 0.09 -0.30 8.08 -2.39 -0.02 -0.32 16 39 H 0.06 0.22 8.14 -2.38 -0.02 0.20 16 40 H 0.06 0.22 8.14 -2.39 -0.02 0.20 16 41 H 0.42 -0.10 8.59 -92.71 -0.80 -0.89 16 42 H 0.17 -0.20 5.03 -2.91 -0.01 -0.21 16 43 H 0.13 -0.79 7.96 -2.38 -0.02 -0.80 16 44 H 0.39 -3.00 8.70 -74.05 -0.64 -3.65 16 45 H 0.19 -0.49 8.06 -2.91 -0.02 -0.52 16 46 H 0.13 -0.09 8.06 -2.91 -0.02 -0.11 16 47 H 0.13 -0.37 7.43 -2.91 -0.02 -0.39 16 Total: 0.00 -15.11 392.32 3.45 -11.66 By element: Atomic # 1 Polarization: -6.72 SS G_CDS: 0.28 Total: -6.44 kcal Atomic # 6 Polarization: 9.29 SS G_CDS: 8.48 Total: 17.77 kcal Atomic # 7 Polarization: -10.26 SS G_CDS: -5.97 Total: -16.24 kcal Atomic # 8 Polarization: 1.15 SS G_CDS: -1.91 Total: -0.76 kcal Atomic # 14 Polarization: -8.57 SS G_CDS: 2.57 Total: -5.99 kcal Total: -15.11 3.45 -11.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12221184_12175864.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.690 kcal (2) G-P(sol) polarization free energy of solvation -15.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -11.663 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds