Wall clock time and date at job start Mon Mar 8 2021 06:32:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86302 * 1 3 3 C 1.86296 * 109.47118 * 2 1 4 4 C 1.86303 * 109.47220 * 240.00426 * 2 1 3 5 5 C 1.86794 * 109.47380 * 120.00266 * 2 1 3 6 6 C 1.38229 * 120.00392 * 89.99634 * 5 2 1 7 7 C 1.38234 * 120.00615 * 180.02562 * 6 5 2 8 8 C 1.38239 * 119.99681 * 0.02562 * 7 6 5 9 9 C 1.50699 * 120.00049 * 179.97438 * 8 7 6 10 10 C 1.53006 * 109.46866 * 89.99881 * 9 8 7 11 11 N 1.46500 * 109.46998 * 179.97438 * 10 9 8 12 12 C 1.39000 * 120.00371 * 180.02562 * 11 10 9 13 13 C 1.39096 * 119.70303 * 0.02562 * 12 11 10 14 14 C 1.38345 * 119.10126 * 179.97438 * 13 12 11 15 15 C 1.38839 * 118.50006 * 359.97438 * 14 13 12 16 16 C 1.50707 * 120.32891 * 180.02562 * 15 14 13 17 17 O 1.42898 * 109.47323 * 65.00384 * 16 15 14 18 18 Si 1.86299 * 109.46852 * 185.00121 * 16 15 14 19 19 H 1.48497 * 109.47256 * 59.99752 * 18 16 15 20 20 H 1.48500 * 109.47474 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.46925 * 300.00004 * 18 16 15 22 22 C 1.38058 * 119.33054 * 359.97438 * 15 14 13 23 23 N 1.31946 * 120.85728 * 359.74647 * 22 15 14 24 24 C 1.38236 * 119.99618 * 0.24824 * 8 7 6 25 25 C 1.38231 * 120.00348 * 359.49741 * 24 8 7 26 26 H 1.08993 * 109.47055 * 299.99634 * 1 2 3 27 27 H 1.09003 * 109.47023 * 60.00078 * 1 2 3 28 28 H 1.09000 * 109.46948 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47404 * 180.02562 * 3 2 1 30 30 H 1.09003 * 109.47567 * 300.00144 * 3 2 1 31 31 H 1.09001 * 109.47166 * 60.00245 * 3 2 1 32 32 H 1.09005 * 109.46656 * 299.99464 * 4 2 1 33 33 H 1.08997 * 109.47190 * 59.99193 * 4 2 1 34 34 H 1.08993 * 109.47404 * 180.02562 * 4 2 1 35 35 H 1.08006 * 120.00063 * 0.02562 * 6 5 2 36 36 H 1.07993 * 120.00649 * 179.97438 * 7 6 5 37 37 H 1.09000 * 109.47247 * 330.00049 * 9 8 7 38 38 H 1.09001 * 109.47358 * 209.99475 * 9 8 7 39 39 H 1.08993 * 109.46955 * 300.00219 * 10 9 8 40 40 H 1.09000 * 109.47050 * 60.00048 * 10 9 8 41 41 H 0.97010 * 119.99909 * 359.97438 * 11 10 9 42 42 H 1.08008 * 120.44908 * 359.95707 * 13 12 11 43 43 H 1.07999 * 120.74327 * 180.02562 * 14 13 12 44 44 H 1.08999 * 109.47151 * 304.99593 * 16 15 14 45 45 H 0.96697 * 114.00361 * 59.99495 * 17 16 15 46 46 H 1.08006 * 119.56909 * 179.97438 * 22 15 14 47 47 H 1.08004 * 119.99728 * 179.72715 * 24 8 7 48 48 H 1.08001 * 119.99970 * 180.22692 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4841 -0.8781 -1.5212 5 6 2.4857 -0.8806 1.5251 6 6 2.7161 -2.2431 1.4909 7 6 3.1764 -2.8950 2.6197 8 6 3.4059 -2.1842 3.7829 9 6 3.9072 -2.8948 5.0137 10 6 5.4373 -2.8949 5.0148 11 7 5.9246 -3.5851 6.2116 12 6 7.2910 -3.7117 6.4330 13 6 8.1903 -3.1802 5.5145 14 6 9.5475 -3.3128 5.7475 15 6 9.9609 -3.9746 6.8959 16 6 11.4293 -4.1421 7.1907 17 8 12.0197 -2.8601 7.4138 18 14 11.6408 -5.1963 8.7122 19 1 11.0273 -6.5286 8.4805 20 1 13.0877 -5.3609 9.0032 21 1 10.9760 -4.5391 9.8660 22 6 9.0133 -4.4767 7.7654 23 7 7.7251 -4.3306 7.5203 24 6 3.1701 -0.8226 3.8187 25 6 2.7148 -0.1699 2.6885 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.5740 1.7565 -0.0005 30 1 2.1207 2.2703 -0.8900 31 1 2.1207 2.2702 0.8900 32 1 2.1208 -1.9058 -1.5212 33 1 2.1206 -0.3643 -2.4111 34 1 3.5740 -0.8785 -1.5210 35 1 2.5364 -2.7986 0.5822 36 1 3.3560 -3.9595 2.5931 37 1 3.5439 -3.9225 5.0132 38 1 3.5433 -2.3811 5.9035 39 1 5.8012 -3.4085 4.1251 40 1 5.8006 -1.8672 5.0153 41 1 5.2937 -3.9533 6.8500 42 1 7.8337 -2.6710 4.6312 43 1 10.2690 -2.9099 5.0522 44 1 11.9173 -4.6245 6.3438 45 1 11.6337 -2.3727 8.1544 46 1 9.3307 -4.9925 8.6596 47 1 3.3452 -0.2680 4.7288 48 1 2.5342 0.8945 2.7155 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_12221184_13915762.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:32:15 Heat of formation + Delta-G solvation = -21.375186 kcal Electronic energy + Delta-G solvation = -24327.959288 eV Core-core repulsion = 20891.437238 eV Total energy + Delta-G solvation = -3436.522050 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 330.163 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.35735 -40.22184 -38.20340 -37.03251 -34.16904 -33.30111 -31.88220 -31.50294 -29.69839 -28.94319 -28.47331 -28.43846 -26.25604 -25.05815 -24.06986 -23.48409 -22.36437 -21.78978 -18.78956 -18.54292 -17.56479 -17.36847 -16.69318 -16.59988 -16.19193 -16.03124 -15.56283 -15.51507 -15.47904 -14.83889 -14.52599 -14.33941 -14.30851 -14.16087 -14.12552 -13.99188 -13.87312 -13.79160 -13.39984 -13.31393 -13.29403 -13.13297 -12.85251 -12.74030 -12.70435 -12.36407 -12.15297 -11.91724 -11.89472 -11.16234 -11.04373 -10.93399 -10.83798 -10.68319 -10.37484 -10.32305 -9.80025 -9.58990 -8.70266 0.26611 0.27471 0.45835 0.52668 1.18583 1.44996 1.53050 1.69432 1.82340 1.90641 1.93876 2.08933 2.52389 2.89387 2.89521 3.51467 3.60142 3.76561 3.79490 3.82363 3.87190 4.05292 4.11222 4.11716 4.14954 4.38450 4.38641 4.50319 4.55466 4.59591 4.67309 4.67554 4.69762 4.72435 4.73044 4.74027 4.77214 4.81242 4.82195 5.02597 5.05518 5.15804 5.32561 5.39381 5.46196 5.47700 5.51045 5.53035 5.61930 5.64838 5.98889 6.12130 6.52694 6.58378 7.17778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.450 4.450 2 Si 1.059 2.941 3 C -0.450 4.450 4 C -0.450 4.450 5 C -0.370 4.370 6 C -0.086 4.086 7 C -0.125 4.125 8 C -0.075 4.075 9 C -0.092 4.092 10 C 0.134 3.866 11 N -0.725 5.725 12 C 0.407 3.593 13 C -0.238 4.238 14 C -0.002 4.002 15 C -0.237 4.237 16 C -0.065 4.065 17 O -0.541 6.541 18 Si 0.941 3.059 19 H -0.249 1.249 20 H -0.252 1.252 21 H -0.250 1.250 22 C 0.148 3.852 23 N -0.540 5.540 24 C -0.125 4.125 25 C -0.086 4.086 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.121 0.879 36 H 0.119 0.881 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.067 0.933 40 H 0.066 0.934 41 H 0.406 0.594 42 H 0.133 0.867 43 H 0.138 0.862 44 H 0.116 0.884 45 H 0.376 0.624 46 H 0.149 0.851 47 H 0.119 0.881 48 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.799 1.192 -2.116 3.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.557 4.557 2 Si 1.250 2.750 3 C -0.557 4.557 4 C -0.557 4.557 5 C -0.412 4.412 6 C -0.104 4.104 7 C -0.143 4.143 8 C -0.076 4.076 9 C -0.130 4.130 10 C 0.009 3.991 11 N -0.358 5.358 12 C 0.172 3.828 13 C -0.263 4.263 14 C -0.028 4.028 15 C -0.242 4.242 16 C -0.176 4.176 17 O -0.346 6.346 18 Si 0.764 3.236 19 H -0.172 1.172 20 H -0.176 1.176 21 H -0.174 1.174 22 C -0.010 4.010 23 N -0.257 5.257 24 C -0.143 4.143 25 C -0.104 4.104 26 H 0.088 0.912 27 H 0.089 0.911 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.138 0.862 36 H 0.137 0.863 37 H 0.099 0.901 38 H 0.099 0.901 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.242 0.758 42 H 0.151 0.849 43 H 0.155 0.845 44 H 0.134 0.866 45 H 0.223 0.777 46 H 0.166 0.834 47 H 0.137 0.863 48 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -1.992 0.240 -1.433 2.466 hybrid contribution -0.099 0.488 -0.130 0.515 sum -2.092 0.729 -1.563 2.711 Atomic orbital electron populations 1.26129 1.20537 1.04549 1.04469 0.78177 0.66840 0.66118 0.63821 1.26139 1.06445 1.18604 1.04549 1.26137 1.06443 1.08038 1.15116 1.27373 1.04101 0.99523 1.10208 1.21075 0.96994 0.94641 0.97715 1.21141 1.00440 0.99726 0.93021 1.19611 0.99421 0.93946 0.94579 1.20751 0.94033 1.01570 0.96615 1.21388 0.93525 0.97057 0.87096 1.44512 1.02747 1.62415 1.26111 1.18368 0.85496 0.89728 0.89258 1.21476 0.93465 1.08830 1.02557 1.21193 0.94885 0.91957 0.94752 1.20953 0.97023 1.07329 0.98902 1.24711 0.90435 0.91917 1.10560 1.86505 1.62069 1.30103 1.55896 0.85814 0.81401 0.79400 0.76980 1.17223 1.17553 1.17383 1.22246 0.87216 0.94246 0.97256 1.67140 1.17658 1.20711 1.20172 1.21142 1.00447 0.93944 0.98793 1.21076 0.97012 0.99636 0.92698 0.91197 0.91056 0.91201 0.91072 0.90971 0.91199 0.91205 0.90967 0.91073 0.86151 0.86321 0.90051 0.90054 0.91523 0.91536 0.75838 0.84905 0.84461 0.86639 0.77736 0.83414 0.86321 0.86148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.73 8.65 101.05 0.87 1.61 16 2 Si 1.06 -2.91 12.32 -169.99 -2.09 -5.01 16 3 C -0.45 0.89 8.53 101.05 0.86 1.76 16 4 C -0.45 0.90 8.53 101.05 0.86 1.76 16 5 C -0.37 0.25 4.59 -39.58 -0.18 0.06 16 6 C -0.09 0.02 9.29 -39.59 -0.37 -0.34 16 7 C -0.13 0.01 9.70 -39.58 -0.38 -0.37 16 8 C -0.07 0.02 5.13 -104.62 -0.54 -0.51 16 9 C -0.09 0.16 5.46 -27.88 -0.15 0.01 16 10 C 0.13 -0.17 4.87 -4.04 -0.02 -0.19 16 11 N -0.73 -0.22 5.73 -60.43 -0.35 -0.57 16 12 C 0.41 0.98 7.65 -155.02 -1.19 -0.21 16 13 C -0.24 -0.31 9.33 -39.22 -0.37 -0.68 16 14 C 0.00 0.00 9.83 -39.32 -0.39 -0.39 16 15 C -0.24 -0.26 5.36 -104.46 -0.56 -0.82 16 16 C -0.06 0.01 2.82 36.01 0.10 0.12 16 17 O -0.54 -0.25 12.84 -35.23 -0.45 -0.70 16 18 Si 0.94 -0.35 25.17 -169.99 -4.28 -4.63 16 19 H -0.25 -0.08 7.11 56.52 0.40 0.32 16 20 H -0.25 -0.25 7.11 56.52 0.40 0.15 16 21 H -0.25 0.05 7.04 56.52 0.40 0.45 16 22 C 0.15 0.32 9.84 -17.57 -0.17 0.15 16 23 N -0.54 -1.96 10.39 -12.44 -0.13 -2.09 16 24 C -0.13 0.01 9.70 -39.58 -0.38 -0.37 16 25 C -0.09 0.02 9.29 -39.58 -0.37 -0.34 16 26 H 0.07 -0.09 7.96 -51.93 -0.41 -0.51 16 27 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 28 H 0.07 -0.09 7.96 -51.93 -0.41 -0.51 16 29 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 30 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 31 H 0.07 -0.15 7.69 -51.93 -0.40 -0.55 16 32 H 0.07 -0.15 7.69 -51.93 -0.40 -0.55 16 33 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 34 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 35 H 0.12 -0.23 7.43 -52.48 -0.39 -0.62 16 36 H 0.12 -0.16 8.06 -52.49 -0.42 -0.58 16 37 H 0.08 -0.17 8.09 -51.93 -0.42 -0.59 16 38 H 0.08 -0.17 8.08 -51.93 -0.42 -0.59 16 39 H 0.07 -0.07 7.93 -51.93 -0.41 -0.49 16 40 H 0.07 -0.07 7.93 -51.93 -0.41 -0.48 16 41 H 0.41 -0.13 8.60 -40.82 -0.35 -0.48 16 42 H 0.13 -0.03 6.71 -52.48 -0.35 -0.39 16 43 H 0.14 -0.06 8.06 -52.49 -0.42 -0.48 16 44 H 0.12 -0.13 7.96 -51.93 -0.41 -0.54 16 45 H 0.38 -0.95 8.70 45.56 0.40 -0.55 16 46 H 0.15 0.09 4.87 -52.48 -0.26 -0.16 16 47 H 0.12 -0.16 8.06 -52.48 -0.42 -0.58 16 48 H 0.12 -0.23 7.43 -52.49 -0.39 -0.62 16 LS Contribution 395.30 15.07 5.96 5.96 Total: 0.00 -5.99 395.30 -10.89 -16.88 By element: Atomic # 1 Polarization: -3.89 SS G_CDS: -7.18 Total: -11.07 kcal Atomic # 6 Polarization: 3.59 SS G_CDS: -2.37 Total: 1.23 kcal Atomic # 7 Polarization: -2.18 SS G_CDS: -0.48 Total: -2.66 kcal Atomic # 8 Polarization: -0.25 SS G_CDS: -0.45 Total: -0.70 kcal Atomic # 14 Polarization: -3.26 SS G_CDS: -6.37 Total: -9.63 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -5.99 -10.89 -16.88 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12221184_13915762.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.496 kcal (2) G-P(sol) polarization free energy of solvation -5.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds