Wall clock time and date at job start Mon Mar 8 2021 06:32:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86302 * 1 3 3 C 1.86296 * 109.47118 * 2 1 4 4 C 1.86303 * 109.47220 * 240.00426 * 2 1 3 5 5 C 1.86794 * 109.47380 * 120.00266 * 2 1 3 6 6 C 1.38229 * 120.00392 * 89.99634 * 5 2 1 7 7 C 1.38234 * 120.00615 * 180.02562 * 6 5 2 8 8 C 1.38239 * 119.99681 * 0.02562 * 7 6 5 9 9 C 1.50699 * 120.00049 * 179.97438 * 8 7 6 10 10 C 1.53006 * 109.46866 * 89.99881 * 9 8 7 11 11 N 1.46500 * 109.46998 * 179.97438 * 10 9 8 12 12 C 1.39000 * 120.00371 * 180.02562 * 11 10 9 13 13 C 1.39096 * 119.70303 * 0.02562 * 12 11 10 14 14 C 1.38345 * 119.10126 * 179.97438 * 13 12 11 15 15 C 1.38839 * 118.50006 * 359.97438 * 14 13 12 16 16 C 1.50707 * 120.32891 * 180.02562 * 15 14 13 17 17 O 1.42898 * 109.47323 * 65.00384 * 16 15 14 18 18 Si 1.86299 * 109.46852 * 185.00121 * 16 15 14 19 19 H 1.48497 * 109.47256 * 59.99752 * 18 16 15 20 20 H 1.48500 * 109.47474 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.46925 * 300.00004 * 18 16 15 22 22 C 1.38058 * 119.33054 * 359.97438 * 15 14 13 23 23 N 1.31946 * 120.85728 * 359.74647 * 22 15 14 24 24 C 1.38236 * 119.99618 * 0.24824 * 8 7 6 25 25 C 1.38231 * 120.00348 * 359.49741 * 24 8 7 26 26 H 1.08993 * 109.47055 * 299.99634 * 1 2 3 27 27 H 1.09003 * 109.47023 * 60.00078 * 1 2 3 28 28 H 1.09000 * 109.46948 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47404 * 180.02562 * 3 2 1 30 30 H 1.09003 * 109.47567 * 300.00144 * 3 2 1 31 31 H 1.09001 * 109.47166 * 60.00245 * 3 2 1 32 32 H 1.09005 * 109.46656 * 299.99464 * 4 2 1 33 33 H 1.08997 * 109.47190 * 59.99193 * 4 2 1 34 34 H 1.08993 * 109.47404 * 180.02562 * 4 2 1 35 35 H 1.08006 * 120.00063 * 0.02562 * 6 5 2 36 36 H 1.07993 * 120.00649 * 179.97438 * 7 6 5 37 37 H 1.09000 * 109.47247 * 330.00049 * 9 8 7 38 38 H 1.09001 * 109.47358 * 209.99475 * 9 8 7 39 39 H 1.08993 * 109.46955 * 300.00219 * 10 9 8 40 40 H 1.09000 * 109.47050 * 60.00048 * 10 9 8 41 41 H 0.97010 * 119.99909 * 359.97438 * 11 10 9 42 42 H 1.08008 * 120.44908 * 359.95707 * 13 12 11 43 43 H 1.07999 * 120.74327 * 180.02562 * 14 13 12 44 44 H 1.08999 * 109.47151 * 304.99593 * 16 15 14 45 45 H 0.96697 * 114.00361 * 59.99495 * 17 16 15 46 46 H 1.08006 * 119.56909 * 179.97438 * 22 15 14 47 47 H 1.08004 * 119.99728 * 179.72715 * 24 8 7 48 48 H 1.08001 * 119.99970 * 180.22692 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7564 0.0000 4 6 2.4841 -0.8781 -1.5212 5 6 2.4857 -0.8806 1.5251 6 6 2.7161 -2.2431 1.4909 7 6 3.1764 -2.8950 2.6197 8 6 3.4059 -2.1842 3.7829 9 6 3.9072 -2.8948 5.0137 10 6 5.4373 -2.8949 5.0148 11 7 5.9246 -3.5851 6.2116 12 6 7.2910 -3.7117 6.4330 13 6 8.1903 -3.1802 5.5145 14 6 9.5475 -3.3128 5.7475 15 6 9.9609 -3.9746 6.8959 16 6 11.4293 -4.1421 7.1907 17 8 12.0197 -2.8601 7.4138 18 14 11.6408 -5.1963 8.7122 19 1 11.0273 -6.5286 8.4805 20 1 13.0877 -5.3609 9.0032 21 1 10.9760 -4.5391 9.8660 22 6 9.0133 -4.4767 7.7654 23 7 7.7251 -4.3306 7.5203 24 6 3.1701 -0.8226 3.8187 25 6 2.7148 -0.1699 2.6885 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.5740 1.7565 -0.0005 30 1 2.1207 2.2703 -0.8900 31 1 2.1207 2.2702 0.8900 32 1 2.1208 -1.9058 -1.5212 33 1 2.1206 -0.3643 -2.4111 34 1 3.5740 -0.8785 -1.5210 35 1 2.5364 -2.7986 0.5822 36 1 3.3560 -3.9595 2.5931 37 1 3.5439 -3.9225 5.0132 38 1 3.5433 -2.3811 5.9035 39 1 5.8012 -3.4085 4.1251 40 1 5.8006 -1.8672 5.0153 41 1 5.2937 -3.9533 6.8500 42 1 7.8337 -2.6710 4.6312 43 1 10.2690 -2.9099 5.0522 44 1 11.9173 -4.6245 6.3438 45 1 11.6337 -2.3727 8.1544 46 1 9.3307 -4.9925 8.6596 47 1 3.3452 -0.2680 4.7288 48 1 2.5342 0.8945 2.7155 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_12221184_13915762.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:32:14 Heat of formation + Delta-G solvation = -12.757643 kcal Electronic energy + Delta-G solvation = -24327.585603 eV Core-core repulsion = 20891.437238 eV Total energy + Delta-G solvation = -3436.148365 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 330.163 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.42853 -40.13418 -38.20282 -37.02141 -34.13222 -33.37083 -31.79601 -31.51972 -29.55206 -28.87054 -28.29177 -28.27503 -26.26403 -25.08378 -24.06369 -23.40386 -22.40750 -21.70394 -18.81666 -18.57489 -17.57886 -17.29823 -16.65462 -16.59120 -16.17255 -15.97346 -15.57409 -15.50572 -15.45670 -14.86491 -14.53901 -14.24395 -14.16869 -14.05736 -14.02243 -13.94949 -13.73170 -13.68355 -13.40410 -13.17859 -13.11741 -12.97209 -12.76056 -12.64607 -12.59396 -12.36410 -12.16646 -11.94668 -11.80964 -11.17752 -10.88726 -10.77770 -10.75513 -10.71928 -10.44665 -10.35321 -9.74340 -9.50854 -8.74752 0.18360 0.34623 0.37690 0.58296 1.20893 1.46386 1.53325 1.87693 1.92983 2.03463 2.03597 2.14539 2.68402 2.79885 2.97117 3.53026 3.59598 3.78747 3.88227 3.88475 3.95208 4.02880 4.12352 4.21517 4.22431 4.35882 4.48533 4.60469 4.60983 4.65286 4.75986 4.83250 4.83901 4.86369 4.88231 4.89388 4.89854 4.91375 4.94336 4.99764 5.14020 5.24707 5.27812 5.48343 5.51726 5.59261 5.63015 5.66939 5.71312 5.73316 5.96331 6.21273 6.49322 6.72746 7.09500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.464 4.464 2 Si 1.124 2.876 3 C -0.462 4.462 4 C -0.462 4.462 5 C -0.384 4.384 6 C -0.100 4.100 7 C -0.139 4.139 8 C -0.082 4.082 9 C -0.084 4.084 10 C 0.140 3.860 11 N -0.722 5.722 12 C 0.392 3.608 13 C -0.243 4.243 14 C -0.007 4.007 15 C -0.236 4.236 16 C -0.060 4.060 17 O -0.553 6.553 18 Si 0.972 3.028 19 H -0.259 1.259 20 H -0.270 1.270 21 H -0.253 1.253 22 C 0.134 3.866 23 N -0.567 5.567 24 C -0.139 4.139 25 C -0.100 4.100 26 H 0.066 0.934 27 H 0.073 0.927 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.068 0.932 35 H 0.133 0.867 36 H 0.127 0.873 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.407 0.593 42 H 0.146 0.854 43 H 0.152 0.848 44 H 0.125 0.875 45 H 0.387 0.613 46 H 0.156 0.844 47 H 0.127 0.873 48 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.764 1.577 -2.683 3.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.570 4.570 2 Si 1.311 2.689 3 C -0.569 4.569 4 C -0.569 4.569 5 C -0.424 4.424 6 C -0.118 4.118 7 C -0.157 4.157 8 C -0.083 4.083 9 C -0.121 4.121 10 C 0.016 3.984 11 N -0.355 5.355 12 C 0.156 3.844 13 C -0.267 4.267 14 C -0.032 4.032 15 C -0.241 4.241 16 C -0.171 4.171 17 O -0.360 6.360 18 Si 0.797 3.203 19 H -0.184 1.184 20 H -0.195 1.195 21 H -0.177 1.177 22 C -0.024 4.024 23 N -0.285 5.285 24 C -0.157 4.157 25 C -0.118 4.118 26 H 0.085 0.915 27 H 0.092 0.908 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.087 0.913 35 H 0.151 0.849 36 H 0.145 0.855 37 H 0.103 0.897 38 H 0.103 0.897 39 H 0.085 0.915 40 H 0.084 0.916 41 H 0.243 0.757 42 H 0.164 0.836 43 H 0.170 0.830 44 H 0.143 0.857 45 H 0.236 0.764 46 H 0.173 0.827 47 H 0.145 0.855 48 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -1.972 0.631 -1.989 2.871 hybrid contribution -0.123 0.376 0.047 0.399 sum -2.095 1.007 -1.942 3.029 Atomic orbital electron populations 1.26304 1.21869 1.04353 1.04456 0.77180 0.65066 0.64670 0.61988 1.26279 1.06402 1.19455 1.04756 1.26278 1.06403 1.08427 1.15783 1.27845 1.03771 0.99664 1.11081 1.21359 0.97074 0.95118 0.98276 1.21369 1.00707 1.00341 0.93320 1.19756 0.99482 0.94058 0.94984 1.20675 0.93524 1.01692 0.96234 1.21372 0.93785 0.96797 0.86483 1.44583 1.02190 1.62245 1.26469 1.18625 0.86373 0.90028 0.89380 1.21666 0.93585 1.08699 1.02787 1.21437 0.95132 0.91708 0.94944 1.21067 0.97458 1.06890 0.98688 1.24715 0.89659 0.91786 1.10967 1.86475 1.62418 1.30386 1.56709 0.85366 0.79661 0.78563 0.76672 1.18371 1.19531 1.17685 1.22469 0.87199 0.94748 0.97940 1.67124 1.18464 1.21767 1.21101 1.21370 1.00718 0.94293 0.99359 1.21361 0.97094 1.00499 0.92872 0.91495 0.90795 0.91496 0.91286 0.90789 0.91007 0.91010 0.90785 0.91284 0.84890 0.85542 0.89668 0.89672 0.91536 0.91567 0.75677 0.83604 0.82998 0.85677 0.76372 0.82676 0.85548 0.84890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 1.58 8.65 113.37 0.98 2.56 16 2 Si 1.12 -6.54 12.32 68.60 0.85 -5.69 16 3 C -0.46 2.01 8.53 113.37 0.97 2.98 16 4 C -0.46 2.01 8.53 113.37 0.97 2.98 16 5 C -0.38 0.52 4.59 22.27 0.10 0.62 16 6 C -0.10 0.05 9.29 22.27 0.21 0.25 16 7 C -0.14 -0.01 9.70 22.27 0.22 0.21 16 8 C -0.08 0.03 5.13 -19.86 -0.10 -0.07 16 9 C -0.08 0.29 5.46 29.85 0.16 0.45 16 10 C 0.14 -0.33 4.87 86.38 0.42 0.09 16 11 N -0.72 -0.71 5.73 -345.09 -1.98 -2.69 16 12 C 0.39 2.05 7.65 133.05 1.02 3.07 16 13 C -0.24 -0.63 9.33 22.50 0.21 -0.42 16 14 C -0.01 -0.01 9.83 22.44 0.22 0.21 16 15 C -0.24 -0.51 5.36 -19.76 -0.11 -0.62 16 16 C -0.06 0.05 2.82 71.24 0.20 0.25 16 17 O -0.55 -0.22 12.84 -148.98 -1.91 -2.13 16 18 Si 0.97 -0.54 25.17 68.60 1.73 1.19 16 19 H -0.26 -0.29 7.11 99.48 0.71 0.42 16 20 H -0.27 -0.66 7.11 99.48 0.71 0.04 16 21 H -0.25 0.07 7.04 99.48 0.70 0.78 16 22 C 0.13 0.65 9.84 84.63 0.83 1.48 16 23 N -0.57 -4.53 10.39 -193.27 -2.01 -6.54 16 24 C -0.14 -0.01 9.70 22.27 0.22 0.20 16 25 C -0.10 0.05 9.29 22.27 0.21 0.25 16 26 H 0.07 -0.18 7.96 -2.39 -0.02 -0.20 16 27 H 0.07 -0.29 7.96 -2.39 -0.02 -0.31 16 28 H 0.07 -0.18 7.96 -2.39 -0.02 -0.20 16 29 H 0.07 -0.25 7.96 -2.39 -0.02 -0.27 16 30 H 0.07 -0.34 7.96 -2.39 -0.02 -0.36 16 31 H 0.07 -0.33 7.69 -2.39 -0.02 -0.35 16 32 H 0.07 -0.33 7.69 -2.38 -0.02 -0.35 16 33 H 0.07 -0.34 7.96 -2.39 -0.02 -0.36 16 34 H 0.07 -0.25 7.96 -2.39 -0.02 -0.27 16 35 H 0.13 -0.53 7.43 -2.91 -0.02 -0.55 16 36 H 0.13 -0.31 8.06 -2.91 -0.02 -0.33 16 37 H 0.08 -0.35 8.09 -2.39 -0.02 -0.37 16 38 H 0.08 -0.35 8.08 -2.39 -0.02 -0.37 16 39 H 0.07 -0.14 7.93 -2.39 -0.02 -0.16 16 40 H 0.07 -0.14 7.93 -2.39 -0.02 -0.16 16 41 H 0.41 -0.02 8.60 -92.70 -0.80 -0.82 16 42 H 0.15 -0.12 6.71 -2.91 -0.02 -0.14 16 43 H 0.15 -0.27 8.06 -2.91 -0.02 -0.29 16 44 H 0.13 -0.35 7.96 -2.39 -0.02 -0.37 16 45 H 0.39 -2.10 8.70 -74.06 -0.64 -2.75 16 46 H 0.16 0.30 4.87 -2.91 -0.01 0.28 16 47 H 0.13 -0.30 8.06 -2.91 -0.02 -0.33 16 48 H 0.13 -0.53 7.43 -2.91 -0.02 -0.55 16 Total: 0.00 -13.36 395.30 3.66 -9.71 By element: Atomic # 1 Polarization: -8.60 SS G_CDS: 0.26 Total: -8.34 kcal Atomic # 6 Polarization: 7.78 SS G_CDS: 6.72 Total: 14.50 kcal Atomic # 7 Polarization: -5.24 SS G_CDS: -3.99 Total: -9.23 kcal Atomic # 8 Polarization: -0.22 SS G_CDS: -1.91 Total: -2.13 kcal Atomic # 14 Polarization: -7.08 SS G_CDS: 2.57 Total: -4.51 kcal Total: -13.36 3.66 -9.71 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12221184_13915762.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.048 kcal (2) G-P(sol) polarization free energy of solvation -13.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -9.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds