Wall clock time and date at job start Mon Mar 8 2021 06:32:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86305 * 109.46980 * 2 1 4 4 C 1.86296 * 109.47367 * 240.00054 * 2 1 3 5 5 C 1.86803 * 109.46852 * 119.99832 * 2 1 3 6 6 C 1.38234 * 119.99940 * 90.00443 * 5 2 1 7 7 C 1.38238 * 119.99675 * 180.28096 * 6 5 2 8 8 C 1.38228 * 120.00120 * 359.47825 * 7 6 5 9 9 C 1.50698 * 120.00200 * 180.23540 * 8 7 6 10 10 C 1.53004 * 109.47248 * 270.28309 * 9 8 7 11 11 N 1.46498 * 109.47123 * 179.97438 * 10 9 8 12 12 C 1.38614 * 120.00230 * 180.02562 * 11 10 9 13 13 N 1.29683 * 124.94296 * 0.02562 * 12 11 10 14 14 C 1.32122 * 116.86235 * 179.97438 * 13 12 11 15 15 C 1.33332 * 114.57862 * 0.02562 * 14 13 12 16 16 C 1.50703 * 125.94968 * 179.97438 * 15 14 13 17 17 O 1.42897 * 109.47292 * 300.00374 * 16 15 14 18 18 Si 1.86299 * 109.47093 * 180.02562 * 16 15 14 19 19 H 1.48497 * 109.46995 * 60.00007 * 18 16 15 20 20 H 1.48497 * 109.47263 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.46760 * 300.00219 * 18 16 15 22 22 S 1.70964 * 124.95027 * 179.72334 * 12 11 10 23 23 C 1.38234 * 120.00000 * 0.52176 * 8 7 6 24 24 C 1.38234 * 119.99820 * 270.02211 * 5 2 1 25 25 H 1.08992 * 109.47179 * 300.00318 * 1 2 3 26 26 H 1.09007 * 109.47049 * 59.99985 * 1 2 3 27 27 H 1.08994 * 109.47120 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46698 * 179.97438 * 3 2 1 29 29 H 1.08998 * 109.47017 * 299.99765 * 3 2 1 30 30 H 1.09004 * 109.46851 * 60.00120 * 3 2 1 31 31 H 1.09006 * 109.46796 * 300.00138 * 4 2 1 32 32 H 1.08998 * 109.47288 * 59.99832 * 4 2 1 33 33 H 1.09002 * 109.47253 * 180.02562 * 4 2 1 34 34 H 1.08002 * 119.99744 * 359.97438 * 6 5 2 35 35 H 1.08004 * 119.99577 * 179.72816 * 7 6 5 36 36 H 1.09007 * 109.46985 * 30.28368 * 9 8 7 37 37 H 1.08998 * 109.47169 * 150.27754 * 9 8 7 38 38 H 1.08995 * 109.47035 * 299.99517 * 10 9 8 39 39 H 1.09002 * 109.46797 * 59.99828 * 10 9 8 40 40 H 0.97002 * 120.00227 * 0.02562 * 11 10 9 41 41 H 1.08000 * 122.71167 * 179.97438 * 14 13 12 42 42 H 1.09007 * 109.46870 * 60.00303 * 16 15 14 43 43 H 0.96696 * 114.00231 * 300.00106 * 17 16 15 44 44 H 1.08001 * 120.00310 * 179.72161 * 23 8 7 45 45 H 1.07997 * 120.00460 * 359.97438 * 24 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4841 -0.8782 -1.5211 5 6 2.4856 -0.8806 1.5253 6 6 2.7160 -2.2431 1.4911 7 6 3.1712 -2.8957 2.6215 8 6 3.4062 -2.1840 3.7829 9 6 3.9075 -2.8945 5.0138 10 6 2.7168 -3.3754 5.8456 11 7 3.2041 -4.0666 7.0418 12 6 2.3027 -4.5940 7.9531 13 7 1.0121 -4.5314 7.8425 14 6 0.3025 -5.0899 8.8069 15 6 1.0274 -5.6491 9.7762 16 6 0.4845 -6.3528 10.9933 17 8 -0.3167 -5.4440 11.7512 18 14 1.8992 -6.9572 12.0439 19 1 2.7289 -5.8015 12.4693 20 1 1.3643 -7.6511 13.2428 21 1 2.7322 -7.9014 11.2565 22 16 2.7302 -5.4281 9.3829 23 6 3.1758 -0.8214 3.8172 24 6 2.7155 -0.1696 2.6883 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 3.5740 1.7565 0.0005 29 1 2.1207 2.2703 -0.8900 30 1 2.1206 2.2703 0.8900 31 1 2.1207 -1.9059 -1.5211 32 1 2.1208 -0.3644 -2.4111 33 1 3.5741 -0.8786 -1.5208 34 1 2.5357 -2.7986 0.5826 35 1 3.3471 -3.9610 2.5960 36 1 4.5134 -3.7509 4.7175 37 1 4.5127 -2.2094 5.6076 38 1 2.1111 -2.5190 6.1419 39 1 2.1118 -4.0604 5.2517 40 1 4.1577 -4.1552 7.1961 41 1 -0.7775 -5.0926 8.8103 42 1 -0.1249 -7.2009 10.6810 43 1 0.1616 -4.6635 12.0625 44 1 3.3551 -0.2660 4.7259 45 1 2.5356 0.8949 2.7150 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_12221184_15704118.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:32:25 Heat of formation + Delta-G solvation = -14.029089 kcal Electronic energy + Delta-G solvation = -22851.658697 eV Core-core repulsion = 19504.607444 eV Total energy + Delta-G solvation = -3347.051253 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 336.119 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.71722 -40.15090 -38.10295 -37.08025 -33.98203 -31.84621 -31.36440 -29.75171 -29.14096 -28.45084 -28.40885 -26.47344 -25.14444 -23.84157 -23.45136 -21.88142 -20.76015 -19.71475 -18.24368 -17.48941 -16.93521 -16.75567 -16.42733 -16.23505 -16.01391 -15.63413 -15.58705 -15.16823 -14.64817 -14.33242 -14.31521 -14.24064 -14.16641 -14.05067 -13.84286 -13.77760 -13.31421 -13.27311 -13.10640 -12.92946 -12.78259 -12.73721 -12.67598 -12.35026 -12.32949 -11.90940 -11.88646 -11.18587 -11.01503 -10.90953 -10.81230 -10.69353 -10.24789 -10.13619 -9.76092 -9.55106 -8.72951 -0.01133 0.01443 0.32359 0.56538 0.68721 1.14359 1.39744 1.48415 1.72428 1.85056 1.89561 1.94417 2.07080 2.14027 2.55176 2.92595 3.45479 3.65473 3.79778 3.91362 3.92666 4.00634 4.14992 4.16726 4.47138 4.53176 4.57808 4.61825 4.69830 4.70217 4.72422 4.74609 4.76433 4.77081 4.77180 4.87103 4.87284 5.06958 5.13842 5.19276 5.41875 5.49459 5.49880 5.54223 5.65220 5.68055 5.80615 6.02750 6.16286 6.51746 7.03300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.450 4.450 2 Si 1.059 2.941 3 C -0.449 4.449 4 C -0.449 4.449 5 C -0.370 4.370 6 C -0.086 4.086 7 C -0.125 4.125 8 C -0.074 4.074 9 C -0.094 4.094 10 C 0.141 3.859 11 N -0.695 5.695 12 C 0.330 3.670 13 N -0.550 5.550 14 C 0.123 3.877 15 C -0.307 4.307 16 C -0.022 4.022 17 O -0.536 6.536 18 Si 0.900 3.100 19 H -0.238 1.238 20 H -0.231 1.231 21 H -0.237 1.237 22 S 0.069 5.931 23 C -0.125 4.125 24 C -0.086 4.086 25 H 0.069 0.931 26 H 0.070 0.930 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.120 0.880 35 H 0.118 0.882 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.414 0.586 41 H 0.178 0.822 42 H 0.125 0.875 43 H 0.377 0.623 44 H 0.118 0.882 45 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.599 0.809 -1.248 2.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.557 4.557 2 Si 1.250 2.750 3 C -0.557 4.557 4 C -0.557 4.557 5 C -0.412 4.412 6 C -0.104 4.104 7 C -0.143 4.143 8 C -0.074 4.074 9 C -0.132 4.132 10 C 0.016 3.984 11 N -0.335 5.335 12 C -0.041 4.041 13 N -0.275 5.275 14 C -0.028 4.028 15 C -0.430 4.430 16 C -0.136 4.136 17 O -0.341 6.341 18 Si 0.720 3.280 19 H -0.161 1.161 20 H -0.153 1.153 21 H -0.160 1.160 22 S 0.318 5.682 23 C -0.143 4.143 24 C -0.104 4.104 25 H 0.088 0.912 26 H 0.089 0.911 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.138 0.862 35 H 0.137 0.863 36 H 0.098 0.902 37 H 0.098 0.902 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.251 0.749 41 H 0.195 0.805 42 H 0.142 0.858 43 H 0.224 0.776 44 H 0.136 0.864 45 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 3.495 0.111 -0.948 3.623 hybrid contribution -0.340 0.465 -0.084 0.583 sum 3.155 0.576 -1.032 3.369 Atomic orbital electron populations 1.26129 1.20521 1.04577 1.04466 0.78179 0.66861 0.66106 0.63818 1.26136 1.06415 1.18619 1.04542 1.26136 1.06417 1.08051 1.15111 1.27371 1.04064 0.99541 1.10229 1.21069 0.97017 0.94644 0.97700 1.21129 1.00440 0.99610 0.93082 1.19568 0.99546 0.93885 0.94429 1.20799 0.97348 1.00652 0.94380 1.21383 0.95995 0.96809 0.84263 1.44052 1.06364 1.60818 1.22236 1.23614 0.91084 0.95889 0.93480 1.66511 1.02312 1.28241 1.30475 1.21353 1.01024 0.93326 0.87126 1.25575 0.92985 1.17591 1.06858 1.24052 1.03273 0.94910 0.91378 1.86521 1.39550 1.36479 1.71513 0.86257 0.77361 0.82687 0.81672 1.16102 1.15301 1.15973 1.84070 1.08936 1.55808 1.19341 1.21131 1.00428 0.94007 0.98697 1.21069 0.97001 0.99631 0.92730 0.91175 0.91078 0.91178 0.91096 0.90976 0.91196 0.91196 0.90976 0.91094 0.86159 0.86349 0.90162 0.90163 0.91096 0.91104 0.74861 0.80469 0.85773 0.77561 0.86350 0.86160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.53 8.65 101.05 0.87 1.41 16 2 Si 1.06 -2.50 12.32 -169.99 -2.09 -4.59 16 3 C -0.45 0.76 8.53 101.05 0.86 1.62 16 4 C -0.45 0.75 8.53 101.05 0.86 1.62 16 5 C -0.37 0.06 4.59 -39.58 -0.18 -0.12 16 6 C -0.09 -0.02 9.29 -39.58 -0.37 -0.39 16 7 C -0.12 -0.06 9.70 -39.58 -0.38 -0.44 16 8 C -0.07 -0.02 5.13 -104.63 -0.54 -0.55 16 9 C -0.09 0.16 5.46 -27.88 -0.15 0.00 16 10 C 0.14 -0.03 5.93 -4.04 -0.02 -0.05 16 11 N -0.69 0.18 5.71 -62.30 -0.36 -0.18 16 12 C 0.33 0.67 8.09 -87.68 -0.71 -0.04 16 13 N -0.55 -2.03 10.14 -15.21 -0.15 -2.18 16 14 C 0.12 0.29 11.22 -19.14 -0.21 0.08 16 15 C -0.31 -0.39 5.74 -36.02 -0.21 -0.60 16 16 C -0.02 0.00 2.99 36.01 0.11 0.11 16 17 O -0.54 -0.23 12.87 -35.23 -0.45 -0.68 16 18 Si 0.90 -0.10 26.34 -169.99 -4.48 -4.58 16 19 H -0.24 -0.06 7.11 56.52 0.40 0.35 16 20 H -0.23 -0.16 7.11 56.52 0.40 0.24 16 21 H -0.24 -0.13 7.11 56.52 0.40 0.27 16 22 S 0.07 0.07 20.57 -107.50 -2.21 -2.14 16 23 C -0.12 -0.06 9.70 -39.58 -0.38 -0.44 16 24 C -0.09 -0.02 9.29 -39.58 -0.37 -0.39 16 25 H 0.07 -0.06 7.96 -51.93 -0.41 -0.47 16 26 H 0.07 -0.10 7.96 -51.93 -0.41 -0.52 16 27 H 0.07 -0.06 7.96 -51.93 -0.41 -0.47 16 28 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 29 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 30 H 0.07 -0.13 7.69 -51.93 -0.40 -0.52 16 31 H 0.07 -0.13 7.69 -51.93 -0.40 -0.52 16 32 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 33 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 34 H 0.12 -0.17 7.43 -52.49 -0.39 -0.56 16 35 H 0.12 -0.10 8.06 -52.48 -0.42 -0.52 16 36 H 0.08 -0.20 8.09 -51.93 -0.42 -0.62 16 37 H 0.08 -0.20 8.09 -51.93 -0.42 -0.62 16 38 H 0.07 0.08 8.14 -51.93 -0.42 -0.34 16 39 H 0.07 0.08 8.14 -51.93 -0.42 -0.34 16 40 H 0.41 -1.09 8.60 -40.82 -0.35 -1.44 16 41 H 0.18 0.18 8.06 -52.49 -0.42 -0.25 16 42 H 0.12 -0.14 7.96 -51.92 -0.41 -0.55 16 43 H 0.38 -0.94 8.70 45.56 0.40 -0.55 16 44 H 0.12 -0.10 8.06 -52.49 -0.42 -0.52 16 45 H 0.12 -0.17 7.43 -52.49 -0.39 -0.56 16 LS Contribution 389.99 15.07 5.88 5.88 Total: 0.00 -6.03 389.99 -11.28 -17.31 By element: Atomic # 1 Polarization: -4.05 SS G_CDS: -6.59 Total: -10.64 kcal Atomic # 6 Polarization: 2.63 SS G_CDS: -0.82 Total: 1.80 kcal Atomic # 7 Polarization: -1.85 SS G_CDS: -0.51 Total: -2.36 kcal Atomic # 8 Polarization: -0.23 SS G_CDS: -0.45 Total: -0.68 kcal Atomic # 14 Polarization: -2.60 SS G_CDS: -6.57 Total: -9.17 kcal Atomic # 16 Polarization: 0.07 SS G_CDS: -2.21 Total: -2.14 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -6.03 -11.28 -17.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12221184_15704118.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.284 kcal (2) G-P(sol) polarization free energy of solvation -6.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds