Wall clock time and date at job start Mon Mar 8 2021 06:32:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86305 * 109.46980 * 2 1 4 4 C 1.86296 * 109.47367 * 240.00054 * 2 1 3 5 5 C 1.86803 * 109.46852 * 119.99832 * 2 1 3 6 6 C 1.38234 * 119.99940 * 90.00443 * 5 2 1 7 7 C 1.38238 * 119.99675 * 180.28096 * 6 5 2 8 8 C 1.38228 * 120.00120 * 359.47825 * 7 6 5 9 9 C 1.50698 * 120.00200 * 180.23540 * 8 7 6 10 10 C 1.53004 * 109.47248 * 270.28309 * 9 8 7 11 11 N 1.46498 * 109.47123 * 179.97438 * 10 9 8 12 12 C 1.38614 * 120.00230 * 180.02562 * 11 10 9 13 13 N 1.29683 * 124.94296 * 0.02562 * 12 11 10 14 14 C 1.32122 * 116.86235 * 179.97438 * 13 12 11 15 15 C 1.33332 * 114.57862 * 0.02562 * 14 13 12 16 16 C 1.50703 * 125.94968 * 179.97438 * 15 14 13 17 17 O 1.42897 * 109.47292 * 300.00374 * 16 15 14 18 18 Si 1.86299 * 109.47093 * 180.02562 * 16 15 14 19 19 H 1.48497 * 109.46995 * 60.00007 * 18 16 15 20 20 H 1.48497 * 109.47263 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.46760 * 300.00219 * 18 16 15 22 22 S 1.70964 * 124.95027 * 179.72334 * 12 11 10 23 23 C 1.38234 * 120.00000 * 0.52176 * 8 7 6 24 24 C 1.38234 * 119.99820 * 270.02211 * 5 2 1 25 25 H 1.08992 * 109.47179 * 300.00318 * 1 2 3 26 26 H 1.09007 * 109.47049 * 59.99985 * 1 2 3 27 27 H 1.08994 * 109.47120 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46698 * 179.97438 * 3 2 1 29 29 H 1.08998 * 109.47017 * 299.99765 * 3 2 1 30 30 H 1.09004 * 109.46851 * 60.00120 * 3 2 1 31 31 H 1.09006 * 109.46796 * 300.00138 * 4 2 1 32 32 H 1.08998 * 109.47288 * 59.99832 * 4 2 1 33 33 H 1.09002 * 109.47253 * 180.02562 * 4 2 1 34 34 H 1.08002 * 119.99744 * 359.97438 * 6 5 2 35 35 H 1.08004 * 119.99577 * 179.72816 * 7 6 5 36 36 H 1.09007 * 109.46985 * 30.28368 * 9 8 7 37 37 H 1.08998 * 109.47169 * 150.27754 * 9 8 7 38 38 H 1.08995 * 109.47035 * 299.99517 * 10 9 8 39 39 H 1.09002 * 109.46797 * 59.99828 * 10 9 8 40 40 H 0.97002 * 120.00227 * 0.02562 * 11 10 9 41 41 H 1.08000 * 122.71167 * 179.97438 * 14 13 12 42 42 H 1.09007 * 109.46870 * 60.00303 * 16 15 14 43 43 H 0.96696 * 114.00231 * 300.00106 * 17 16 15 44 44 H 1.08001 * 120.00310 * 179.72161 * 23 8 7 45 45 H 1.07997 * 120.00460 * 359.97438 * 24 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4841 -0.8782 -1.5211 5 6 2.4856 -0.8806 1.5253 6 6 2.7160 -2.2431 1.4911 7 6 3.1712 -2.8957 2.6215 8 6 3.4062 -2.1840 3.7829 9 6 3.9075 -2.8945 5.0138 10 6 2.7168 -3.3754 5.8456 11 7 3.2041 -4.0666 7.0418 12 6 2.3027 -4.5940 7.9531 13 7 1.0121 -4.5314 7.8425 14 6 0.3025 -5.0899 8.8069 15 6 1.0274 -5.6491 9.7762 16 6 0.4845 -6.3528 10.9933 17 8 -0.3167 -5.4440 11.7512 18 14 1.8992 -6.9572 12.0439 19 1 2.7289 -5.8015 12.4693 20 1 1.3643 -7.6511 13.2428 21 1 2.7322 -7.9014 11.2565 22 16 2.7302 -5.4281 9.3829 23 6 3.1758 -0.8214 3.8172 24 6 2.7155 -0.1696 2.6883 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 3.5740 1.7565 0.0005 29 1 2.1207 2.2703 -0.8900 30 1 2.1206 2.2703 0.8900 31 1 2.1207 -1.9059 -1.5211 32 1 2.1208 -0.3644 -2.4111 33 1 3.5741 -0.8786 -1.5208 34 1 2.5357 -2.7986 0.5826 35 1 3.3471 -3.9610 2.5960 36 1 4.5134 -3.7509 4.7175 37 1 4.5127 -2.2094 5.6076 38 1 2.1111 -2.5190 6.1419 39 1 2.1118 -4.0604 5.2517 40 1 4.1577 -4.1552 7.1961 41 1 -0.7775 -5.0926 8.8103 42 1 -0.1249 -7.2009 10.6810 43 1 0.1616 -4.6635 12.0625 44 1 3.3551 -0.2660 4.7259 45 1 2.5356 0.8949 2.7150 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_12221184_15704118.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:32:24 Heat of formation + Delta-G solvation = -5.775176 kcal Electronic energy + Delta-G solvation = -22851.300781 eV Core-core repulsion = 19504.607444 eV Total energy + Delta-G solvation = -3346.693336 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 336.119 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.81359 -40.11362 -38.11575 -37.09910 -33.95336 -31.80404 -31.42317 -29.66361 -29.08991 -28.29827 -28.28347 -26.52745 -25.16448 -23.88121 -23.41592 -21.83856 -20.83951 -19.77068 -18.28838 -17.44961 -16.95542 -16.76977 -16.43208 -16.24531 -16.01505 -15.64677 -15.58765 -15.23449 -14.68714 -14.33403 -14.25781 -14.15261 -14.07071 -13.94382 -13.74236 -13.69934 -13.20078 -13.12226 -12.97945 -12.95539 -12.74723 -12.66744 -12.61004 -12.39292 -12.36345 -11.93385 -11.82610 -11.24009 -10.89621 -10.77754 -10.76174 -10.71371 -10.33998 -10.22352 -9.75012 -9.51338 -8.79640 -0.11036 -0.06751 0.35575 0.57559 0.60199 1.13548 1.39538 1.47383 1.86935 1.87643 1.93729 2.03085 2.07134 2.16211 2.67680 2.95814 3.50024 3.63364 3.88085 3.93101 3.96010 4.02076 4.20811 4.21350 4.51907 4.59369 4.61914 4.64861 4.68206 4.82488 4.83158 4.85684 4.87661 4.87680 4.88731 4.90173 4.93704 5.06415 5.13873 5.23752 5.50002 5.58358 5.62107 5.66126 5.70272 5.72338 5.73148 6.09129 6.21295 6.65742 6.96269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.464 4.464 2 Si 1.123 2.877 3 C -0.461 4.461 4 C -0.461 4.461 5 C -0.385 4.385 6 C -0.102 4.102 7 C -0.140 4.140 8 C -0.083 4.083 9 C -0.083 4.083 10 C 0.151 3.849 11 N -0.686 5.686 12 C 0.319 3.681 13 N -0.580 5.580 14 C 0.107 3.893 15 C -0.305 4.305 16 C -0.020 4.020 17 O -0.547 6.547 18 Si 0.925 3.075 19 H -0.242 1.242 20 H -0.242 1.242 21 H -0.245 1.245 22 S 0.086 5.914 23 C -0.140 4.140 24 C -0.102 4.102 25 H 0.065 0.935 26 H 0.074 0.926 27 H 0.065 0.935 28 H 0.068 0.932 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.068 0.932 34 H 0.133 0.867 35 H 0.127 0.873 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.056 0.944 39 H 0.055 0.945 40 H 0.426 0.574 41 H 0.184 0.816 42 H 0.135 0.865 43 H 0.389 0.611 44 H 0.127 0.873 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.155 0.855 -1.253 3.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.570 4.570 2 Si 1.310 2.690 3 C -0.568 4.568 4 C -0.568 4.568 5 C -0.424 4.424 6 C -0.119 4.119 7 C -0.158 4.158 8 C -0.084 4.084 9 C -0.121 4.121 10 C 0.025 3.975 11 N -0.327 5.327 12 C -0.052 4.052 13 N -0.307 5.307 14 C -0.043 4.043 15 C -0.428 4.428 16 C -0.134 4.134 17 O -0.354 6.354 18 Si 0.747 3.253 19 H -0.165 1.165 20 H -0.165 1.165 21 H -0.168 1.168 22 S 0.335 5.665 23 C -0.158 4.158 24 C -0.119 4.119 25 H 0.084 0.916 26 H 0.093 0.907 27 H 0.084 0.916 28 H 0.088 0.912 29 H 0.093 0.907 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.093 0.907 33 H 0.088 0.912 34 H 0.151 0.849 35 H 0.145 0.855 36 H 0.110 0.890 37 H 0.110 0.890 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.265 0.735 41 H 0.201 0.799 42 H 0.152 0.848 43 H 0.238 0.762 44 H 0.145 0.855 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 4.070 0.161 -0.942 4.180 hybrid contribution -0.524 0.454 -0.069 0.697 sum 3.545 0.615 -1.011 3.738 Atomic orbital electron populations 1.26313 1.21961 1.04315 1.04450 0.77199 0.65017 0.64775 0.61989 1.26263 1.06405 1.19336 1.04780 1.26263 1.06407 1.08399 1.15722 1.27876 1.03702 0.99688 1.11173 1.21366 0.97130 0.95155 0.98284 1.21380 1.00726 1.00252 0.93450 1.19773 0.99597 0.94036 0.95012 1.20726 0.96706 1.01107 0.93553 1.21222 0.96363 0.95781 0.84169 1.44079 1.06755 1.60159 1.21719 1.23827 0.91081 0.96101 0.94201 1.66507 1.03261 1.29385 1.31517 1.21502 1.01491 0.93940 0.87416 1.25765 0.93135 1.17035 1.06899 1.24133 1.03499 0.94957 0.90793 1.86494 1.40235 1.37171 1.71512 0.85902 0.76735 0.81940 0.80753 1.16486 1.16459 1.16848 1.83952 1.08594 1.55349 1.18562 1.21382 1.00704 0.94426 0.99284 1.21366 0.97108 1.00524 0.92935 0.91568 0.90721 0.91574 0.91248 0.90705 0.91031 0.91036 0.90705 0.91247 0.84880 0.85531 0.89038 0.89017 0.92590 0.92619 0.73482 0.79917 0.84790 0.76220 0.85511 0.84872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 1.03 8.65 113.37 0.98 2.01 16 2 Si 1.12 -5.41 12.32 68.60 0.85 -4.57 16 3 C -0.46 1.68 8.53 113.37 0.97 2.65 16 4 C -0.46 1.67 8.53 113.37 0.97 2.64 16 5 C -0.38 0.00 4.59 22.27 0.10 0.10 16 6 C -0.10 -0.10 9.29 22.27 0.21 0.11 16 7 C -0.14 -0.21 9.70 22.27 0.22 0.00 16 8 C -0.08 -0.08 5.13 -19.87 -0.10 -0.18 16 9 C -0.08 0.27 5.46 29.85 0.16 0.44 16 10 C 0.15 0.05 5.93 86.38 0.51 0.57 16 11 N -0.69 0.20 5.71 -351.01 -2.01 -1.81 16 12 C 0.32 1.43 8.09 179.32 1.45 2.88 16 13 N -0.58 -4.83 10.14 -202.02 -2.05 -6.88 16 14 C 0.11 0.58 11.22 83.54 0.94 1.52 16 15 C -0.31 -0.81 5.74 24.58 0.14 -0.67 16 16 C -0.02 0.01 2.99 71.24 0.21 0.22 16 17 O -0.55 -0.34 12.87 -148.98 -1.92 -2.26 16 18 Si 0.93 -0.46 26.34 68.60 1.81 1.35 16 19 H -0.24 0.00 7.11 99.48 0.71 0.71 16 20 H -0.24 -0.32 7.11 99.48 0.71 0.39 16 21 H -0.24 -0.20 7.11 99.48 0.71 0.50 16 22 S 0.09 0.16 20.57 -56.49 -1.16 -1.00 16 23 C -0.14 -0.21 9.70 22.27 0.22 0.01 16 24 C -0.10 -0.10 9.29 22.27 0.21 0.11 16 25 H 0.07 -0.09 7.96 -2.39 -0.02 -0.11 16 26 H 0.07 -0.22 7.96 -2.38 -0.02 -0.24 16 27 H 0.07 -0.09 7.96 -2.39 -0.02 -0.11 16 28 H 0.07 -0.21 7.96 -2.39 -0.02 -0.23 16 29 H 0.07 -0.30 7.96 -2.39 -0.02 -0.32 16 30 H 0.07 -0.28 7.69 -2.38 -0.02 -0.29 16 31 H 0.07 -0.27 7.69 -2.38 -0.02 -0.29 16 32 H 0.07 -0.30 7.96 -2.39 -0.02 -0.32 16 33 H 0.07 -0.21 7.96 -2.39 -0.02 -0.23 16 34 H 0.13 -0.36 7.43 -2.91 -0.02 -0.38 16 35 H 0.13 -0.15 8.06 -2.91 -0.02 -0.17 16 36 H 0.09 -0.49 8.09 -2.38 -0.02 -0.51 16 37 H 0.09 -0.50 8.09 -2.39 -0.02 -0.52 16 38 H 0.06 0.20 8.14 -2.39 -0.02 0.18 16 39 H 0.06 0.20 8.14 -2.39 -0.02 0.18 16 40 H 0.43 -2.38 8.60 -92.71 -0.80 -3.18 16 41 H 0.18 0.54 8.06 -2.91 -0.02 0.52 16 42 H 0.13 -0.35 7.96 -2.38 -0.02 -0.36 16 43 H 0.39 -2.02 8.70 -74.06 -0.64 -2.67 16 44 H 0.13 -0.16 8.06 -2.91 -0.02 -0.18 16 45 H 0.13 -0.36 7.43 -2.91 -0.02 -0.38 16 Total: 0.00 -13.77 389.99 3.00 -10.77 By element: Atomic # 1 Polarization: -8.33 SS G_CDS: 0.30 Total: -8.03 kcal Atomic # 6 Polarization: 5.23 SS G_CDS: 7.18 Total: 12.41 kcal Atomic # 7 Polarization: -4.63 SS G_CDS: -4.05 Total: -8.68 kcal Atomic # 8 Polarization: -0.34 SS G_CDS: -1.92 Total: -2.26 kcal Atomic # 14 Polarization: -5.87 SS G_CDS: 2.65 Total: -3.22 kcal Atomic # 16 Polarization: 0.16 SS G_CDS: -1.16 Total: -1.00 kcal Total: -13.77 3.00 -10.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12221184_15704118.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.000 kcal (2) G-P(sol) polarization free energy of solvation -13.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -10.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds