Wall clock time and date at job start Mon Mar 8 2021 06:32:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.33327 * 125.95264 * 2 1 4 4 C 1.50697 * 122.71210 * 0.02562 * 3 2 1 5 5 O 1.42901 * 109.46703 * 330.00173 * 4 3 2 6 6 Si 1.86298 * 109.47394 * 210.00440 * 4 3 2 7 7 H 1.48503 * 109.47296 * 59.99554 * 6 4 3 8 8 H 1.48495 * 109.47392 * 180.02562 * 6 4 3 9 9 H 1.48499 * 109.46964 * 299.99912 * 6 4 3 10 10 N 1.32121 * 114.57961 * 179.97438 * 3 2 1 11 11 C 1.29685 * 116.86754 * 0.02562 * 10 3 2 12 12 N 1.38614 * 124.94941 * 179.97438 * 11 10 3 13 13 C 1.46499 * 119.99813 * 179.72084 * 12 11 10 14 14 C 1.53004 * 109.47198 * 180.27673 * 13 12 11 15 15 C 1.50700 * 109.47208 * 180.02562 * 14 13 12 16 16 C 1.38235 * 119.99866 * 269.72461 * 15 14 13 17 17 C 1.38235 * 119.99851 * 179.76627 * 16 15 14 18 18 C 1.38234 * 119.99917 * 0.50645 * 17 16 15 19 19 Si 1.86804 * 119.99965 * 179.72273 * 18 17 16 20 20 C 1.86298 * 109.47300 * 270.02457 * 19 18 17 21 21 C 1.86300 * 109.47041 * 30.02357 * 19 18 17 22 22 C 1.86296 * 109.46852 * 150.02448 * 19 18 17 23 23 C 1.38232 * 119.99842 * 359.74885 * 18 17 16 24 24 C 1.38231 * 120.00427 * 359.97438 * 23 18 17 25 25 S 1.70961 * 110.10182 * 0.24066 * 11 10 3 26 26 H 1.09000 * 109.46752 * 90.00363 * 1 2 3 27 27 H 1.08997 * 109.47552 * 210.00039 * 1 2 3 28 28 H 1.08995 * 109.47319 * 330.00556 * 1 2 3 29 29 H 1.09001 * 109.47133 * 90.00493 * 4 3 2 30 30 H 0.96695 * 114.00217 * 299.99671 * 5 4 3 31 31 H 0.97001 * 120.00338 * 0.02562 * 12 11 10 32 32 H 1.09009 * 109.47454 * 300.27442 * 13 12 11 33 33 H 1.08998 * 109.47492 * 60.27737 * 13 12 11 34 34 H 1.08995 * 109.46638 * 300.00121 * 14 13 12 35 35 H 1.09006 * 109.47139 * 60.00254 * 14 13 12 36 36 H 1.08005 * 120.00237 * 0.02562 * 16 15 14 37 37 H 1.07998 * 119.99873 * 180.23530 * 17 16 15 38 38 H 1.09009 * 109.46819 * 59.99789 * 20 19 18 39 39 H 1.09000 * 109.47206 * 179.97438 * 20 19 18 40 40 H 1.09002 * 109.47389 * 300.00237 * 20 19 18 41 41 H 1.09005 * 109.46769 * 59.99938 * 21 19 18 42 42 H 1.09000 * 109.47308 * 180.02562 * 21 19 18 43 43 H 1.08995 * 109.47351 * 300.00350 * 21 19 18 44 44 H 1.08996 * 109.47349 * 60.00278 * 22 19 18 45 45 H 1.09000 * 109.46678 * 180.02562 * 22 19 18 46 46 H 1.08998 * 109.47027 * 299.99691 * 22 19 18 47 47 H 1.08002 * 119.99582 * 179.97438 * 23 18 17 48 48 H 1.08001 * 120.00324 * 179.97438 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2897 1.0793 0.0000 4 6 1.7415 2.4830 0.0006 5 8 0.4811 2.5022 -0.6726 6 14 2.9320 3.6151 -0.8779 7 1 3.1116 3.1544 -2.2782 8 1 2.3920 4.9984 -0.8768 9 1 4.2417 3.5950 -0.1784 10 7 3.5850 0.8187 0.0005 11 6 3.9315 -0.4310 0.0005 12 7 5.2384 -0.8926 0.0005 13 6 5.5065 -2.3329 0.0066 14 6 7.0180 -2.5703 0.0122 15 6 7.2938 -4.0519 0.0178 16 6 7.4220 -4.7265 1.2176 17 6 7.6702 -6.0863 1.2228 18 6 7.8005 -6.7697 0.0283 19 14 8.1435 -8.6060 0.0353 20 6 9.9841 -8.8939 0.0421 21 6 7.3894 -9.3727 1.5565 22 6 7.3991 -9.3825 -1.4858 23 6 7.6774 -6.0941 -1.1714 24 6 7.4236 -4.7353 -1.1767 25 16 2.5413 -1.4261 -0.0071 26 1 -0.3633 -0.0001 -1.0277 27 1 -0.3634 -0.8899 0.5138 28 1 -0.3634 0.8900 0.5137 29 1 1.6097 2.8212 1.0284 30 1 0.5229 2.2127 -1.5942 31 1 5.9756 -0.2621 0.0009 32 1 5.0651 -2.7809 0.8969 33 1 5.0707 -2.7874 -0.8831 34 1 7.4594 -2.1223 -0.8780 35 1 7.4539 -2.1159 0.9020 36 1 7.3242 -4.1918 2.1509 37 1 7.7666 -6.6141 2.1601 38 1 10.4196 -8.4394 0.9321 39 1 10.1842 -9.9654 0.0467 40 1 10.4254 -8.4452 -0.8479 41 1 6.3124 -9.2043 1.5524 42 1 7.5899 -10.4441 1.5609 43 1 7.8248 -8.9184 2.4464 44 1 7.8403 -8.9339 -2.3758 45 1 7.5989 -10.4540 -1.4814 46 1 6.3222 -9.2141 -1.4897 47 1 7.7796 -6.6280 -2.1047 48 1 7.3279 -4.2074 -2.1140 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_12221184_15704122.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:32:34 Heat of formation + Delta-G solvation = -18.075760 kcal Electronic energy + Delta-G solvation = -24951.960366 eV Core-core repulsion = 21449.196017 eV Total energy + Delta-G solvation = -3502.764349 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 350.135 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.98725 -40.27656 -38.21214 -37.06223 -34.14706 -32.51293 -31.90844 -30.00056 -29.50777 -28.48578 -28.48365 -28.43841 -25.63537 -24.68677 -23.98831 -23.51303 -21.97122 -20.47907 -19.10176 -17.99910 -17.71196 -17.06970 -16.89547 -16.46478 -16.27285 -15.85424 -15.69053 -15.59427 -14.80249 -14.68475 -14.38750 -14.34274 -14.21471 -14.14263 -13.91018 -13.90148 -13.80745 -13.75907 -13.37905 -13.31607 -13.30181 -13.14248 -12.96617 -12.81679 -12.76017 -12.62529 -12.25105 -11.98751 -11.92331 -11.73867 -11.06393 -11.04952 -10.94452 -10.85966 -10.53096 -10.27387 -9.94238 -9.82384 -9.62446 -8.59570 0.07394 0.21820 0.23917 0.50193 0.83838 1.30142 1.67118 1.67770 1.77264 1.81197 1.86273 1.95063 1.96988 2.23729 2.51094 2.86386 3.39900 3.56782 3.69444 3.74990 3.81743 4.05202 4.09003 4.23191 4.28604 4.40966 4.47519 4.48305 4.62293 4.66075 4.66350 4.68325 4.70560 4.71835 4.71958 4.73166 4.77546 4.82266 4.95107 5.01058 5.12934 5.16480 5.36048 5.37865 5.43719 5.46567 5.50047 5.56685 5.59758 5.61169 6.09145 6.26874 6.50951 6.99598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.238 4.238 3 C 0.065 3.935 4 C -0.047 4.047 5 O -0.535 6.535 6 Si 0.983 3.017 7 H -0.261 1.261 8 H -0.262 1.262 9 H -0.247 1.247 10 N -0.549 5.549 11 C 0.319 3.681 12 N -0.696 5.696 13 C 0.127 3.873 14 C -0.089 4.089 15 C -0.077 4.077 16 C -0.124 4.124 17 C -0.086 4.086 18 C -0.369 4.369 19 Si 1.059 2.941 20 C -0.450 4.450 21 C -0.450 4.450 22 C -0.450 4.450 23 C -0.086 4.086 24 C -0.124 4.124 25 S 0.101 5.899 26 H 0.070 0.930 27 H 0.059 0.941 28 H 0.093 0.907 29 H 0.125 0.875 30 H 0.376 0.624 31 H 0.413 0.587 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.119 0.881 37 H 0.121 0.879 38 H 0.069 0.931 39 H 0.070 0.930 40 H 0.069 0.931 41 H 0.070 0.930 42 H 0.071 0.929 43 H 0.069 0.931 44 H 0.069 0.931 45 H 0.071 0.929 46 H 0.070 0.930 47 H 0.121 0.879 48 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.231 -3.773 -0.469 3.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.361 4.361 3 C -0.066 4.066 4 C -0.160 4.160 5 O -0.339 6.339 6 Si 0.805 3.195 7 H -0.185 1.185 8 H -0.186 1.186 9 H -0.170 1.170 10 N -0.276 5.276 11 C -0.052 4.052 12 N -0.338 5.338 13 C 0.003 3.997 14 C -0.127 4.127 15 C -0.077 4.077 16 C -0.142 4.142 17 C -0.104 4.104 18 C -0.411 4.411 19 Si 1.251 2.749 20 C -0.557 4.557 21 C -0.557 4.557 22 C -0.557 4.557 23 C -0.104 4.104 24 C -0.142 4.142 25 S 0.349 5.651 26 H 0.088 0.912 27 H 0.078 0.922 28 H 0.112 0.888 29 H 0.142 0.858 30 H 0.224 0.776 31 H 0.251 0.749 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.102 0.898 35 H 0.102 0.898 36 H 0.137 0.863 37 H 0.139 0.861 38 H 0.088 0.912 39 H 0.090 0.910 40 H 0.088 0.912 41 H 0.089 0.911 42 H 0.090 0.910 43 H 0.088 0.912 44 H 0.088 0.912 45 H 0.090 0.910 46 H 0.089 0.911 47 H 0.139 0.861 48 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 1.883 -3.845 -0.323 4.294 hybrid contribution 0.065 0.597 -0.210 0.636 sum 1.948 -3.248 -0.534 3.825 Atomic orbital electron populations 1.20218 0.86318 1.03271 1.02687 1.25122 1.01348 0.92575 1.17036 1.20146 0.86746 0.97281 1.02397 1.24464 0.92571 0.95246 1.03676 1.86512 1.28801 1.89629 1.28941 0.85137 0.78060 0.76862 0.79477 1.18483 1.18644 1.16986 1.65956 1.17336 1.16752 1.27572 1.23230 0.91770 0.91518 0.98692 1.43941 1.01906 1.07214 1.80699 1.21538 0.96586 0.78999 1.02544 1.20710 0.94284 0.93403 1.04299 1.19572 1.00222 0.94257 0.93682 1.21146 1.00845 0.95003 0.97247 1.21080 0.97225 0.93942 0.98159 1.27389 1.02825 1.16702 0.94180 0.78174 0.67229 0.62232 0.67278 1.26132 1.20189 1.04785 1.04589 1.26139 1.07288 1.07263 1.15058 1.26137 1.07219 1.07332 1.15058 1.21077 0.97230 0.93993 0.98111 1.21140 1.00852 0.94964 0.97292 1.84028 0.96558 1.10568 1.73897 0.91173 0.92246 0.88812 0.85791 0.77608 0.74938 0.91132 0.91136 0.89828 0.89811 0.86279 0.86100 0.91200 0.91044 0.91198 0.91059 0.90958 0.91201 0.91199 0.90959 0.91064 0.86104 0.86289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.01 8.95 36.00 0.32 0.31 16 2 C -0.24 -0.49 6.50 -36.03 -0.23 -0.72 16 3 C 0.06 0.18 5.92 -84.18 -0.50 -0.32 16 4 C -0.05 -0.06 2.83 36.00 0.10 0.05 16 5 O -0.53 -0.17 9.89 -35.23 -0.35 -0.52 16 6 Si 0.98 1.75 27.37 -169.99 -4.65 -2.91 16 7 H -0.26 -0.72 7.11 56.52 0.40 -0.32 16 8 H -0.26 -0.61 7.11 56.52 0.40 -0.21 16 9 H -0.25 -0.85 7.11 56.52 0.40 -0.45 16 10 N -0.55 -2.13 8.95 -11.36 -0.10 -2.23 16 11 C 0.32 0.78 8.24 -87.68 -0.72 0.06 16 12 N -0.70 -0.07 5.71 -62.29 -0.36 -0.42 16 13 C 0.13 -0.18 5.51 -4.04 -0.02 -0.20 16 14 C -0.09 0.19 5.46 -27.88 -0.15 0.04 16 15 C -0.08 0.04 5.13 -104.62 -0.54 -0.49 16 16 C -0.12 0.04 9.70 -39.58 -0.38 -0.34 16 17 C -0.09 0.04 9.29 -39.58 -0.37 -0.33 16 18 C -0.37 0.31 4.59 -39.59 -0.18 0.13 16 19 Si 1.06 -3.07 12.32 -169.99 -2.09 -5.16 16 20 C -0.45 0.79 8.65 101.05 0.87 1.66 16 21 C -0.45 0.95 8.53 101.05 0.86 1.81 16 22 C -0.45 0.95 8.53 101.05 0.86 1.81 16 23 C -0.09 0.04 9.29 -39.59 -0.37 -0.33 16 24 C -0.12 0.04 9.70 -39.59 -0.38 -0.34 16 25 S 0.10 0.15 22.32 -107.50 -2.40 -2.25 16 26 H 0.07 -0.06 8.14 -51.93 -0.42 -0.48 16 27 H 0.06 -0.01 8.14 -51.93 -0.42 -0.43 16 28 H 0.09 0.05 6.61 -51.93 -0.34 -0.30 16 29 H 0.12 0.04 7.96 -51.93 -0.41 -0.37 16 30 H 0.38 -0.89 8.68 45.56 0.40 -0.50 16 31 H 0.41 -0.32 8.60 -40.82 -0.35 -0.67 16 32 H 0.07 -0.08 8.14 -51.92 -0.42 -0.50 16 33 H 0.07 -0.08 8.14 -51.93 -0.42 -0.51 16 34 H 0.08 -0.22 8.08 -51.93 -0.42 -0.64 16 35 H 0.08 -0.22 8.08 -51.93 -0.42 -0.64 16 36 H 0.12 -0.19 8.06 -52.48 -0.42 -0.61 16 37 H 0.12 -0.25 7.43 -52.49 -0.39 -0.64 16 38 H 0.07 -0.10 7.96 -51.92 -0.41 -0.52 16 39 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 40 H 0.07 -0.10 7.96 -51.93 -0.41 -0.52 16 41 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 42 H 0.07 -0.15 7.96 -51.93 -0.41 -0.57 16 43 H 0.07 -0.16 7.69 -51.93 -0.40 -0.55 16 44 H 0.07 -0.16 7.69 -51.93 -0.40 -0.56 16 45 H 0.07 -0.16 7.96 -51.93 -0.41 -0.57 16 46 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 47 H 0.12 -0.26 7.43 -52.49 -0.39 -0.65 16 48 H 0.12 -0.19 8.06 -52.49 -0.42 -0.62 16 LS Contribution 407.39 15.07 6.14 6.14 Total: 0.00 -5.99 407.39 -12.00 -17.99 By element: Atomic # 1 Polarization: -6.09 SS G_CDS: -7.36 Total: -13.45 kcal Atomic # 6 Polarization: 3.63 SS G_CDS: -0.83 Total: 2.80 kcal Atomic # 7 Polarization: -2.19 SS G_CDS: -0.46 Total: -2.65 kcal Atomic # 8 Polarization: -0.17 SS G_CDS: -0.35 Total: -0.52 kcal Atomic # 14 Polarization: -1.32 SS G_CDS: -6.75 Total: -8.07 kcal Atomic # 16 Polarization: 0.15 SS G_CDS: -2.40 Total: -2.25 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -5.99 -12.00 -17.99 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12221184_15704122.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.086 kcal (2) G-P(sol) polarization free energy of solvation -5.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds