Wall clock time and date at job start Mon Mar 8 2021 06:32:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.33327 * 125.95264 * 2 1 4 4 C 1.50697 * 122.71210 * 0.02562 * 3 2 1 5 5 O 1.42901 * 109.46703 * 330.00173 * 4 3 2 6 6 Si 1.86298 * 109.47394 * 210.00440 * 4 3 2 7 7 H 1.48503 * 109.47296 * 59.99554 * 6 4 3 8 8 H 1.48495 * 109.47392 * 180.02562 * 6 4 3 9 9 H 1.48499 * 109.46964 * 299.99912 * 6 4 3 10 10 N 1.32121 * 114.57961 * 179.97438 * 3 2 1 11 11 C 1.29685 * 116.86754 * 0.02562 * 10 3 2 12 12 N 1.38614 * 124.94941 * 179.97438 * 11 10 3 13 13 C 1.46499 * 119.99813 * 179.72084 * 12 11 10 14 14 C 1.53004 * 109.47198 * 180.27673 * 13 12 11 15 15 C 1.50700 * 109.47208 * 180.02562 * 14 13 12 16 16 C 1.38235 * 119.99866 * 269.72461 * 15 14 13 17 17 C 1.38235 * 119.99851 * 179.76627 * 16 15 14 18 18 C 1.38234 * 119.99917 * 0.50645 * 17 16 15 19 19 Si 1.86804 * 119.99965 * 179.72273 * 18 17 16 20 20 C 1.86298 * 109.47300 * 270.02457 * 19 18 17 21 21 C 1.86300 * 109.47041 * 30.02357 * 19 18 17 22 22 C 1.86296 * 109.46852 * 150.02448 * 19 18 17 23 23 C 1.38232 * 119.99842 * 359.74885 * 18 17 16 24 24 C 1.38231 * 120.00427 * 359.97438 * 23 18 17 25 25 S 1.70961 * 110.10182 * 0.24066 * 11 10 3 26 26 H 1.09000 * 109.46752 * 90.00363 * 1 2 3 27 27 H 1.08997 * 109.47552 * 210.00039 * 1 2 3 28 28 H 1.08995 * 109.47319 * 330.00556 * 1 2 3 29 29 H 1.09001 * 109.47133 * 90.00493 * 4 3 2 30 30 H 0.96695 * 114.00217 * 299.99671 * 5 4 3 31 31 H 0.97001 * 120.00338 * 0.02562 * 12 11 10 32 32 H 1.09009 * 109.47454 * 300.27442 * 13 12 11 33 33 H 1.08998 * 109.47492 * 60.27737 * 13 12 11 34 34 H 1.08995 * 109.46638 * 300.00121 * 14 13 12 35 35 H 1.09006 * 109.47139 * 60.00254 * 14 13 12 36 36 H 1.08005 * 120.00237 * 0.02562 * 16 15 14 37 37 H 1.07998 * 119.99873 * 180.23530 * 17 16 15 38 38 H 1.09009 * 109.46819 * 59.99789 * 20 19 18 39 39 H 1.09000 * 109.47206 * 179.97438 * 20 19 18 40 40 H 1.09002 * 109.47389 * 300.00237 * 20 19 18 41 41 H 1.09005 * 109.46769 * 59.99938 * 21 19 18 42 42 H 1.09000 * 109.47308 * 180.02562 * 21 19 18 43 43 H 1.08995 * 109.47351 * 300.00350 * 21 19 18 44 44 H 1.08996 * 109.47349 * 60.00278 * 22 19 18 45 45 H 1.09000 * 109.46678 * 180.02562 * 22 19 18 46 46 H 1.08998 * 109.47027 * 299.99691 * 22 19 18 47 47 H 1.08002 * 119.99582 * 179.97438 * 23 18 17 48 48 H 1.08001 * 120.00324 * 179.97438 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2897 1.0793 0.0000 4 6 1.7415 2.4830 0.0006 5 8 0.4811 2.5022 -0.6726 6 14 2.9320 3.6151 -0.8779 7 1 3.1116 3.1544 -2.2782 8 1 2.3920 4.9984 -0.8768 9 1 4.2417 3.5950 -0.1784 10 7 3.5850 0.8187 0.0005 11 6 3.9315 -0.4310 0.0005 12 7 5.2384 -0.8926 0.0005 13 6 5.5065 -2.3329 0.0066 14 6 7.0180 -2.5703 0.0122 15 6 7.2938 -4.0519 0.0178 16 6 7.4220 -4.7265 1.2176 17 6 7.6702 -6.0863 1.2228 18 6 7.8005 -6.7697 0.0283 19 14 8.1435 -8.6060 0.0353 20 6 9.9841 -8.8939 0.0421 21 6 7.3894 -9.3727 1.5565 22 6 7.3991 -9.3825 -1.4858 23 6 7.6774 -6.0941 -1.1714 24 6 7.4236 -4.7353 -1.1767 25 16 2.5413 -1.4261 -0.0071 26 1 -0.3633 -0.0001 -1.0277 27 1 -0.3634 -0.8899 0.5138 28 1 -0.3634 0.8900 0.5137 29 1 1.6097 2.8212 1.0284 30 1 0.5229 2.2127 -1.5942 31 1 5.9756 -0.2621 0.0009 32 1 5.0651 -2.7809 0.8969 33 1 5.0707 -2.7874 -0.8831 34 1 7.4594 -2.1223 -0.8780 35 1 7.4539 -2.1159 0.9020 36 1 7.3242 -4.1918 2.1509 37 1 7.7666 -6.6141 2.1601 38 1 10.4196 -8.4394 0.9321 39 1 10.1842 -9.9654 0.0467 40 1 10.4254 -8.4452 -0.8479 41 1 6.3124 -9.2043 1.5524 42 1 7.5899 -10.4441 1.5609 43 1 7.8248 -8.9184 2.4464 44 1 7.8403 -8.9339 -2.3758 45 1 7.5989 -10.4540 -1.4814 46 1 6.3222 -9.2141 -1.4897 47 1 7.7796 -6.6280 -2.1047 48 1 7.3279 -4.2074 -2.1140 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_12221184_15704122.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:32:33 Heat of formation + Delta-G solvation = -8.365665 kcal Electronic energy + Delta-G solvation = -24951.539304 eV Core-core repulsion = 21449.196017 eV Total energy + Delta-G solvation = -3502.343287 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 350.135 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.09822 -40.17357 -38.22993 -37.06805 -34.09966 -32.53961 -31.80539 -29.95628 -29.38633 -28.46023 -28.29476 -28.27492 -25.68854 -24.68164 -24.01823 -23.41611 -21.88651 -20.53968 -19.19229 -18.05870 -17.66839 -17.05796 -16.89426 -16.45311 -16.24188 -15.92266 -15.67378 -15.57874 -14.84095 -14.79102 -14.26780 -14.19346 -14.08068 -13.98460 -13.85014 -13.82062 -13.73837 -13.71850 -13.36275 -13.20154 -13.11990 -12.97427 -12.86657 -12.79471 -12.65891 -12.58161 -12.36142 -12.21518 -11.88745 -11.79586 -11.08823 -10.89273 -10.75803 -10.72833 -10.66488 -10.36869 -10.05460 -9.75068 -9.52711 -8.67237 -0.04733 0.12110 0.32857 0.57516 0.72395 1.17571 1.48297 1.59721 1.79258 1.85726 1.90296 2.03132 2.07228 2.11806 2.68014 2.95642 3.37807 3.53845 3.83401 3.86087 3.91853 4.16357 4.18383 4.21743 4.35151 4.39382 4.58303 4.59600 4.60123 4.81607 4.82315 4.83688 4.85225 4.85758 4.87921 4.89212 4.90130 4.91991 4.92121 5.10819 5.13875 5.23585 5.36353 5.48771 5.54686 5.59040 5.62427 5.66717 5.69714 5.72568 6.19520 6.26006 6.59956 6.89924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C -0.245 4.245 3 C 0.049 3.951 4 C -0.037 4.037 5 O -0.536 6.536 6 Si 1.014 2.986 7 H -0.276 1.276 8 H -0.268 1.268 9 H -0.273 1.273 10 N -0.576 5.576 11 C 0.307 3.693 12 N -0.691 5.691 13 C 0.132 3.868 14 C -0.081 4.081 15 C -0.084 4.084 16 C -0.139 4.139 17 C -0.101 4.101 18 C -0.383 4.383 19 Si 1.124 2.876 20 C -0.464 4.464 21 C -0.462 4.462 22 C -0.462 4.462 23 C -0.101 4.101 24 C -0.138 4.138 25 S 0.114 5.886 26 H 0.082 0.918 27 H 0.063 0.937 28 H 0.092 0.908 29 H 0.132 0.868 30 H 0.388 0.612 31 H 0.416 0.584 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.127 0.873 37 H 0.133 0.867 38 H 0.066 0.934 39 H 0.073 0.927 40 H 0.066 0.934 41 H 0.068 0.932 42 H 0.073 0.927 43 H 0.071 0.929 44 H 0.071 0.929 45 H 0.073 0.927 46 H 0.068 0.932 47 H 0.134 0.866 48 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.855 -4.345 -0.504 4.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.368 4.368 3 C -0.081 4.081 4 C -0.151 4.151 5 O -0.342 6.342 6 Si 0.840 3.160 7 H -0.201 1.201 8 H -0.193 1.193 9 H -0.198 1.198 10 N -0.304 5.304 11 C -0.064 4.064 12 N -0.332 5.332 13 C 0.008 3.992 14 C -0.118 4.118 15 C -0.084 4.084 16 C -0.157 4.157 17 C -0.119 4.119 18 C -0.423 4.423 19 Si 1.312 2.688 20 C -0.570 4.570 21 C -0.569 4.569 22 C -0.569 4.569 23 C -0.118 4.118 24 C -0.156 4.156 25 S 0.362 5.638 26 H 0.100 0.900 27 H 0.082 0.918 28 H 0.110 0.890 29 H 0.150 0.850 30 H 0.237 0.763 31 H 0.254 0.746 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.145 0.855 37 H 0.151 0.849 38 H 0.085 0.915 39 H 0.092 0.908 40 H 0.085 0.915 41 H 0.087 0.913 42 H 0.092 0.908 43 H 0.090 0.910 44 H 0.090 0.910 45 H 0.092 0.908 46 H 0.087 0.913 47 H 0.151 0.849 48 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 1.512 -4.413 -0.369 4.680 hybrid contribution 0.224 0.743 -0.218 0.806 sum 1.736 -3.670 -0.587 4.102 Atomic orbital electron populations 1.20252 0.85090 1.03364 1.03495 1.25403 1.02248 0.92563 1.16576 1.20375 0.86669 0.98110 1.02933 1.24345 0.92497 0.94259 1.04015 1.86490 1.28164 1.89624 1.29955 0.84694 0.76741 0.76469 0.78135 1.20068 1.19300 1.19837 1.65976 1.18105 1.17607 1.28734 1.23487 0.92734 0.91572 0.98633 1.44056 1.01346 1.07857 1.79942 1.21545 0.97130 0.78090 1.02397 1.20644 0.93654 0.92649 1.04902 1.19723 1.00193 0.94907 0.93623 1.21381 1.01080 0.95415 0.97790 1.21363 0.97325 0.94196 0.98968 1.27849 1.02378 1.18065 0.93971 0.77171 0.65515 0.60166 0.65986 1.26307 1.21455 1.04922 1.04305 1.26283 1.07283 1.07559 1.15798 1.26279 1.07213 1.07628 1.15788 1.21363 0.97316 0.94253 0.98915 1.21377 1.01062 0.95368 0.97838 1.83913 0.95985 1.10136 1.73730 0.89951 0.91814 0.88987 0.85029 0.76255 0.74563 0.91271 0.91206 0.89211 0.89228 0.85468 0.84875 0.91496 0.90807 0.91485 0.91292 0.90798 0.91009 0.90993 0.90798 0.91291 0.84858 0.85442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 0.02 8.95 71.23 0.64 0.66 16 2 C -0.24 -0.98 6.50 24.57 0.16 -0.82 16 3 C 0.05 0.29 5.92 41.40 0.24 0.54 16 4 C -0.04 -0.09 2.83 71.23 0.20 0.11 16 5 O -0.54 -0.07 9.89 -148.98 -1.47 -1.54 16 6 Si 1.01 4.42 27.37 68.60 1.88 6.30 16 7 H -0.28 -1.79 7.11 99.48 0.71 -1.09 16 8 H -0.27 -1.35 7.11 99.48 0.71 -0.64 16 9 H -0.27 -2.35 7.11 99.48 0.71 -1.65 16 10 N -0.58 -4.86 8.95 -189.87 -1.70 -6.56 16 11 C 0.31 1.64 8.24 179.32 1.48 3.12 16 12 N -0.69 -0.38 5.71 -351.00 -2.01 -2.39 16 13 C 0.13 -0.35 5.51 86.38 0.48 0.13 16 14 C -0.08 0.35 5.46 29.85 0.16 0.51 16 15 C -0.08 0.08 5.13 -19.87 -0.10 -0.02 16 16 C -0.14 0.05 9.70 22.27 0.22 0.27 16 17 C -0.10 0.08 9.29 22.27 0.21 0.29 16 18 C -0.38 0.64 4.59 22.27 0.10 0.74 16 19 Si 1.12 -6.78 12.32 68.60 0.85 -5.93 16 20 C -0.46 1.67 8.65 113.37 0.98 2.65 16 21 C -0.46 2.07 8.53 113.37 0.97 3.04 16 22 C -0.46 2.09 8.53 113.37 0.97 3.06 16 23 C -0.10 0.09 9.29 22.27 0.21 0.29 16 24 C -0.14 0.06 9.70 22.27 0.22 0.28 16 25 S 0.11 0.35 22.32 -56.49 -1.26 -0.91 16 26 H 0.08 -0.23 8.14 -2.39 -0.02 -0.25 16 27 H 0.06 -0.07 8.14 -2.39 -0.02 -0.09 16 28 H 0.09 0.03 6.61 -2.39 -0.02 0.02 16 29 H 0.13 0.09 7.96 -2.39 -0.02 0.07 16 30 H 0.39 -2.06 8.68 -74.06 -0.64 -2.70 16 31 H 0.42 -0.45 8.60 -92.71 -0.80 -1.25 16 32 H 0.07 -0.14 8.14 -2.38 -0.02 -0.16 16 33 H 0.07 -0.16 8.14 -2.39 -0.02 -0.18 16 34 H 0.09 -0.49 8.08 -2.39 -0.02 -0.51 16 35 H 0.09 -0.48 8.08 -2.38 -0.02 -0.50 16 36 H 0.13 -0.38 8.06 -2.91 -0.02 -0.40 16 37 H 0.13 -0.56 7.43 -2.91 -0.02 -0.59 16 38 H 0.07 -0.19 7.96 -2.38 -0.02 -0.21 16 39 H 0.07 -0.30 7.96 -2.39 -0.02 -0.32 16 40 H 0.07 -0.19 7.96 -2.39 -0.02 -0.21 16 41 H 0.07 -0.26 7.96 -2.38 -0.02 -0.28 16 42 H 0.07 -0.34 7.96 -2.39 -0.02 -0.36 16 43 H 0.07 -0.34 7.69 -2.39 -0.02 -0.36 16 44 H 0.07 -0.35 7.69 -2.39 -0.02 -0.37 16 45 H 0.07 -0.35 7.96 -2.39 -0.02 -0.36 16 46 H 0.07 -0.26 7.96 -2.39 -0.02 -0.28 16 47 H 0.13 -0.58 7.43 -2.91 -0.02 -0.60 16 48 H 0.13 -0.39 8.06 -2.91 -0.02 -0.42 16 Total: 0.00 -13.57 407.39 3.68 -9.89 By element: Atomic # 1 Polarization: -13.96 SS G_CDS: 0.27 Total: -13.69 kcal Atomic # 6 Polarization: 7.71 SS G_CDS: 7.12 Total: 14.83 kcal Atomic # 7 Polarization: -5.25 SS G_CDS: -3.70 Total: -8.95 kcal Atomic # 8 Polarization: -0.07 SS G_CDS: -1.47 Total: -1.54 kcal Atomic # 14 Polarization: -2.36 SS G_CDS: 2.72 Total: 0.37 kcal Atomic # 16 Polarization: 0.35 SS G_CDS: -1.26 Total: -0.91 kcal Total: -13.57 3.68 -9.89 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12221184_15704122.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.527 kcal (2) G-P(sol) polarization free energy of solvation -13.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -9.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds