Wall clock time and date at job start Mon Mar 8 2021 06:34:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86299 * 1 3 3 C 1.86302 * 109.46924 * 2 1 4 4 C 1.86301 * 109.47083 * 240.00465 * 2 1 3 5 5 C 1.86791 * 109.47322 * 120.00350 * 2 1 3 6 6 C 1.38239 * 120.00119 * 89.99962 * 5 2 1 7 7 C 1.38236 * 119.99892 * 180.02562 * 6 5 2 8 8 C 1.38240 * 119.99946 * 0.02562 * 7 6 5 9 9 C 1.50698 * 119.99532 * 179.97438 * 8 7 6 10 10 C 1.53006 * 109.47184 * 90.00308 * 9 8 7 11 11 N 1.46504 * 109.46883 * 179.97438 * 10 9 8 12 12 C 1.39149 * 119.99730 * 180.02562 * 11 10 9 13 13 C 1.39298 * 119.72098 * 179.97438 * 12 11 10 14 14 F 1.35102 * 120.46525 * 359.97438 * 13 12 11 15 15 C 1.38476 * 119.06177 * 179.97438 * 13 12 11 16 16 C 1.38858 * 118.48796 * 359.97438 * 15 13 12 17 17 C 1.50703 * 120.33207 * 179.97438 * 16 15 13 18 18 O 1.42902 * 109.47092 * 300.00284 * 17 16 15 19 19 Si 1.86297 * 109.47191 * 180.02562 * 17 16 15 20 20 H 1.48499 * 109.46836 * 180.02562 * 19 17 16 21 21 H 1.48497 * 109.47253 * 299.99898 * 19 17 16 22 22 H 1.48501 * 109.46885 * 60.00266 * 19 17 16 23 23 C 1.38032 * 119.34161 * 0.02562 * 16 15 13 24 24 N 1.31979 * 120.89992 * 359.73422 * 23 16 15 25 25 C 1.38227 * 119.99973 * 0.25341 * 8 7 6 26 26 C 1.38229 * 120.00244 * 359.48999 * 25 8 7 27 27 H 1.08997 * 109.46787 * 299.99297 * 1 2 3 28 28 H 1.09002 * 109.47481 * 59.99808 * 1 2 3 29 29 H 1.09006 * 109.47064 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46973 * 180.02562 * 3 2 1 31 31 H 1.08998 * 109.47443 * 299.99905 * 3 2 1 32 32 H 1.08997 * 109.46814 * 60.00720 * 3 2 1 33 33 H 1.09006 * 109.47012 * 299.99838 * 4 2 1 34 34 H 1.09002 * 109.47185 * 59.99546 * 4 2 1 35 35 H 1.09001 * 109.47357 * 179.97438 * 4 2 1 36 36 H 1.07994 * 120.00222 * 0.02562 * 6 5 2 37 37 H 1.07998 * 119.99829 * 179.97438 * 7 6 5 38 38 H 1.09001 * 109.47612 * 330.00363 * 9 8 7 39 39 H 1.09001 * 109.47122 * 210.00194 * 9 8 7 40 40 H 1.09001 * 109.47002 * 299.99404 * 10 9 8 41 41 H 1.08993 * 109.46955 * 59.99842 * 10 9 8 42 42 H 0.96992 * 119.99966 * 359.97438 * 11 10 9 43 43 H 1.08007 * 120.75843 * 179.97438 * 15 13 12 44 44 H 1.08994 * 109.46934 * 60.00044 * 17 16 15 45 45 H 0.96697 * 113.99923 * 179.97438 * 18 17 16 46 46 H 1.07998 * 119.54881 * 180.02562 * 23 16 15 47 47 H 1.08003 * 119.99904 * 179.72588 * 25 8 7 48 48 H 1.08006 * 120.00456 * 180.22715 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4839 1.7565 0.0000 4 6 2.4840 -0.8781 -1.5212 5 6 2.4857 -0.8806 1.5251 6 6 2.7161 -2.2432 1.4908 7 6 3.1764 -2.8950 2.6196 8 6 3.4058 -2.1842 3.7829 9 6 3.9071 -2.8949 5.0136 10 6 5.4372 -2.8949 5.0149 11 7 5.9244 -3.5853 6.2117 12 6 7.2923 -3.7119 6.4334 13 6 7.7492 -4.3690 7.5735 14 9 6.8739 -4.8832 8.4648 15 6 9.1133 -4.4876 7.7802 16 6 9.9758 -3.9443 6.8374 17 6 11.4680 -4.0489 7.0212 18 8 11.8443 -3.4036 8.2394 19 14 12.3293 -3.2238 5.5902 20 1 13.7996 -3.3275 5.7710 21 1 11.9384 -3.8939 4.3240 22 1 11.9367 -1.7927 5.5346 23 6 9.4530 -3.3064 5.7305 24 7 8.1482 -3.2119 5.5561 25 6 3.1699 -0.8227 3.8188 26 6 2.7147 -0.1700 2.6885 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.5739 1.7565 -0.0005 31 1 2.1206 2.2703 -0.8900 32 1 2.1207 2.2702 0.8900 33 1 2.1206 -1.9058 -1.5213 34 1 2.1206 -0.3643 -2.4112 35 1 3.5740 -0.8777 -1.5215 36 1 2.5365 -2.7986 0.5822 37 1 3.3561 -3.9596 2.5929 38 1 3.5439 -3.9226 5.0131 39 1 3.5430 -2.3813 5.9034 40 1 5.8013 -3.4086 4.1252 41 1 5.8004 -1.8673 5.0155 42 1 5.2936 -3.9535 6.8498 43 1 9.4977 -4.9912 8.6550 44 1 11.7561 -5.0993 7.0624 45 1 12.7932 -3.4324 8.4229 46 1 10.1208 -2.8830 4.9949 47 1 3.3449 -0.2682 4.7289 48 1 2.5338 0.8945 2.7155 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_12221184_17656566.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:34:49 Heat of formation + Delta-G solvation = -63.618627 kcal Electronic energy + Delta-G solvation = -26789.496600 eV Core-core repulsion = 22881.688761 eV Total energy + Delta-G solvation = -3907.807839 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 348.154 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -49.80024 -41.31187 -40.15118 -38.18606 -37.07985 -34.24788 -33.12897 -31.81531 -31.59809 -29.66896 -28.94185 -28.43277 -28.40296 -26.33536 -25.35957 -23.63350 -23.41676 -22.68229 -21.75916 -19.28822 -18.67838 -18.25070 -17.94639 -17.36219 -16.92194 -16.50540 -16.40612 -16.08356 -15.85062 -15.61028 -15.31348 -15.02676 -14.71003 -14.36680 -14.29862 -14.24921 -14.12600 -14.11191 -14.05353 -13.83352 -13.77003 -13.68717 -13.30042 -13.25403 -13.09562 -12.77813 -12.71428 -12.64867 -12.50223 -12.10340 -12.05266 -11.85385 -11.23694 -11.00128 -10.89362 -10.79109 -10.65793 -10.61997 -10.33812 -9.73064 -9.51637 -8.69524 -0.00422 0.20482 0.33843 0.59616 1.08112 1.37765 1.46091 1.74263 1.85863 1.86567 1.93983 2.04563 2.56678 2.60003 2.95587 3.11715 3.25805 3.39704 3.67426 3.85638 3.87940 3.93213 4.03094 4.16698 4.19096 4.21738 4.28785 4.53802 4.56144 4.57594 4.66111 4.71062 4.71920 4.74102 4.75039 4.76344 4.76389 4.77566 4.92798 4.97098 5.04538 5.11307 5.22768 5.41662 5.43651 5.51825 5.52466 5.54529 5.67915 5.72314 5.97447 6.18035 6.22551 6.52705 7.01632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.449 4.449 2 Si 1.059 2.941 3 C -0.450 4.450 4 C -0.449 4.449 5 C -0.371 4.371 6 C -0.086 4.086 7 C -0.125 4.125 8 C -0.072 4.072 9 C -0.095 4.095 10 C 0.139 3.861 11 N -0.719 5.719 12 C 0.389 3.611 13 C -0.020 4.020 14 F -0.133 7.133 15 C -0.034 4.034 16 C -0.165 4.165 17 C -0.068 4.068 18 O -0.546 6.546 19 Si 0.938 3.062 20 H -0.252 1.252 21 H -0.246 1.246 22 H -0.244 1.244 23 C 0.142 3.858 24 N -0.511 5.511 25 C -0.125 4.125 26 C -0.086 4.086 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.120 0.880 37 H 0.118 0.882 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.070 0.930 41 H 0.069 0.931 42 H 0.412 0.588 43 H 0.151 0.849 44 H 0.079 0.921 45 H 0.382 0.618 46 H 0.157 0.843 47 H 0.118 0.882 48 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.023 -0.429 -1.472 1.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.557 4.557 2 Si 1.251 2.749 3 C -0.557 4.557 4 C -0.557 4.557 5 C -0.413 4.413 6 C -0.104 4.104 7 C -0.143 4.143 8 C -0.073 4.073 9 C -0.133 4.133 10 C 0.015 3.985 11 N -0.353 5.353 12 C 0.151 3.849 13 C -0.047 4.047 14 F -0.112 7.112 15 C -0.060 4.060 16 C -0.170 4.170 17 C -0.179 4.179 18 O -0.352 6.352 19 Si 0.760 3.240 20 H -0.176 1.176 21 H -0.170 1.170 22 H -0.167 1.167 23 C -0.015 4.015 24 N -0.227 5.227 25 C -0.143 4.143 26 C -0.104 4.104 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.138 0.862 37 H 0.136 0.864 38 H 0.098 0.902 39 H 0.098 0.902 40 H 0.088 0.912 41 H 0.088 0.912 42 H 0.250 0.750 43 H 0.168 0.832 44 H 0.097 0.903 45 H 0.229 0.771 46 H 0.174 0.826 47 H 0.136 0.864 48 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 0.369 0.553 -2.970 3.043 hybrid contribution 0.352 -1.097 1.722 2.072 sum 0.721 -0.544 -1.248 1.540 Atomic orbital electron populations 1.26129 1.20567 1.04528 1.04437 0.78171 0.66798 0.66120 0.63853 1.26136 1.06466 1.18613 1.04507 1.26137 1.06462 1.08024 1.15093 1.27361 1.04248 0.99517 1.10174 1.21063 0.97062 0.94641 0.97671 1.21130 1.00434 0.99713 0.93031 1.19594 0.99129 0.93945 0.94596 1.20810 0.94585 1.01344 0.96561 1.21290 0.92374 0.97662 0.87145 1.44554 1.01812 1.62234 1.26701 1.18399 0.86666 0.91206 0.88674 1.17965 0.88126 1.07197 0.91386 1.91488 1.68055 1.85309 1.66390 1.21232 0.89961 0.95885 0.98906 1.19845 0.94923 1.04888 0.97356 1.24498 0.95068 1.01364 0.97013 1.86507 1.29470 1.79220 1.40002 0.85860 0.79644 0.81398 0.77089 1.17587 1.16952 1.16678 1.22286 0.90489 0.93311 0.95422 1.67323 1.03138 1.23063 1.29218 1.21130 1.00420 0.93949 0.98800 1.21065 0.97068 0.99584 0.92709 0.91206 0.91086 0.91210 0.91061 0.91006 0.91208 0.91211 0.91006 0.91061 0.86196 0.86371 0.90246 0.90246 0.91199 0.91230 0.75049 0.83176 0.90348 0.77079 0.82644 0.86365 0.86192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.54 8.65 101.05 0.87 1.42 16 2 Si 1.06 -2.34 12.32 -169.99 -2.09 -4.43 16 3 C -0.45 0.66 8.53 101.05 0.86 1.52 16 4 C -0.45 0.67 8.53 101.05 0.86 1.54 16 5 C -0.37 -0.03 4.59 -39.58 -0.18 -0.21 16 6 C -0.09 -0.04 9.29 -39.58 -0.37 -0.41 16 7 C -0.12 -0.11 9.70 -39.58 -0.38 -0.49 16 8 C -0.07 -0.05 5.13 -104.63 -0.54 -0.59 16 9 C -0.10 0.07 5.46 -27.88 -0.15 -0.08 16 10 C 0.14 0.08 5.68 -4.04 -0.02 0.05 16 11 N -0.72 -0.79 5.71 -60.34 -0.34 -1.13 16 12 C 0.39 1.16 7.49 -154.84 -1.16 0.00 16 13 C -0.02 -0.06 7.35 -39.10 -0.29 -0.34 16 14 F -0.13 -0.39 16.65 2.25 0.04 -0.35 16 15 C -0.03 -0.06 9.75 -39.26 -0.38 -0.44 16 16 C -0.16 -0.23 5.43 -104.47 -0.57 -0.80 16 17 C -0.07 0.07 2.83 36.01 0.10 0.17 16 18 O -0.55 0.23 12.75 -35.23 -0.45 -0.22 16 19 Si 0.94 -1.20 25.10 -169.99 -4.27 -5.46 16 20 H -0.25 0.30 7.11 56.52 0.40 0.70 16 21 H -0.25 0.20 7.11 56.52 0.40 0.60 16 22 H -0.24 -0.05 7.11 56.52 0.40 0.35 16 23 C 0.14 0.30 9.84 -17.56 -0.17 0.13 16 24 N -0.51 -1.80 9.57 -12.36 -0.12 -1.92 16 25 C -0.12 -0.11 9.70 -39.59 -0.38 -0.50 16 26 C -0.09 -0.05 9.29 -39.58 -0.37 -0.42 16 27 H 0.07 -0.07 7.96 -51.93 -0.41 -0.48 16 28 H 0.07 -0.10 7.96 -51.93 -0.41 -0.52 16 29 H 0.07 -0.07 7.96 -51.93 -0.41 -0.48 16 30 H 0.07 -0.08 7.96 -51.93 -0.41 -0.49 16 31 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 32 H 0.07 -0.11 7.69 -51.93 -0.40 -0.51 16 33 H 0.07 -0.11 7.69 -51.93 -0.40 -0.51 16 34 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 35 H 0.07 -0.08 7.96 -51.93 -0.41 -0.50 16 36 H 0.12 -0.15 7.43 -52.49 -0.39 -0.54 16 37 H 0.12 -0.05 8.06 -52.49 -0.42 -0.47 16 38 H 0.08 -0.11 8.09 -51.93 -0.42 -0.53 16 39 H 0.08 -0.10 8.08 -51.93 -0.42 -0.52 16 40 H 0.07 0.10 8.14 -51.93 -0.42 -0.32 16 41 H 0.07 0.11 8.14 -51.93 -0.42 -0.31 16 42 H 0.41 -0.15 7.94 -40.82 -0.32 -0.47 16 43 H 0.15 0.05 8.06 -52.48 -0.42 -0.37 16 44 H 0.08 -0.22 7.96 -51.93 -0.41 -0.64 16 45 H 0.38 -1.84 8.74 45.56 0.40 -1.44 16 46 H 0.16 0.04 4.88 -52.49 -0.26 -0.21 16 47 H 0.12 -0.04 8.06 -52.48 -0.42 -0.46 16 48 H 0.12 -0.14 7.43 -52.48 -0.39 -0.53 16 LS Contribution 402.79 15.07 6.07 6.07 Total: 0.00 -6.37 402.79 -10.25 -16.62 By element: Atomic # 1 Polarization: -2.89 SS G_CDS: -6.82 Total: -9.71 kcal Atomic # 6 Polarization: 2.80 SS G_CDS: -2.27 Total: 0.54 kcal Atomic # 7 Polarization: -2.59 SS G_CDS: -0.46 Total: -3.05 kcal Atomic # 8 Polarization: 0.23 SS G_CDS: -0.45 Total: -0.22 kcal Atomic # 9 Polarization: -0.39 SS G_CDS: 0.04 Total: -0.35 kcal Atomic # 14 Polarization: -3.54 SS G_CDS: -6.36 Total: -9.90 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -6.37 -10.25 -16.62 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12221184_17656566.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.001 kcal (2) G-P(sol) polarization free energy of solvation -6.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds