Wall clock time and date at job start Mon Mar 8 2021 06:34:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86299 * 1 3 3 C 1.86302 * 109.46924 * 2 1 4 4 C 1.86301 * 109.47083 * 240.00465 * 2 1 3 5 5 C 1.86791 * 109.47322 * 120.00350 * 2 1 3 6 6 C 1.38239 * 120.00119 * 89.99962 * 5 2 1 7 7 C 1.38236 * 119.99892 * 180.02562 * 6 5 2 8 8 C 1.38240 * 119.99946 * 0.02562 * 7 6 5 9 9 C 1.50698 * 119.99532 * 179.97438 * 8 7 6 10 10 C 1.53006 * 109.47184 * 90.00308 * 9 8 7 11 11 N 1.46504 * 109.46883 * 179.97438 * 10 9 8 12 12 C 1.39149 * 119.99730 * 180.02562 * 11 10 9 13 13 C 1.39298 * 119.72098 * 179.97438 * 12 11 10 14 14 F 1.35102 * 120.46525 * 359.97438 * 13 12 11 15 15 C 1.38476 * 119.06177 * 179.97438 * 13 12 11 16 16 C 1.38858 * 118.48796 * 359.97438 * 15 13 12 17 17 C 1.50703 * 120.33207 * 179.97438 * 16 15 13 18 18 O 1.42902 * 109.47092 * 300.00284 * 17 16 15 19 19 Si 1.86297 * 109.47191 * 180.02562 * 17 16 15 20 20 H 1.48499 * 109.46836 * 180.02562 * 19 17 16 21 21 H 1.48497 * 109.47253 * 299.99898 * 19 17 16 22 22 H 1.48501 * 109.46885 * 60.00266 * 19 17 16 23 23 C 1.38032 * 119.34161 * 0.02562 * 16 15 13 24 24 N 1.31979 * 120.89992 * 359.73422 * 23 16 15 25 25 C 1.38227 * 119.99973 * 0.25341 * 8 7 6 26 26 C 1.38229 * 120.00244 * 359.48999 * 25 8 7 27 27 H 1.08997 * 109.46787 * 299.99297 * 1 2 3 28 28 H 1.09002 * 109.47481 * 59.99808 * 1 2 3 29 29 H 1.09006 * 109.47064 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46973 * 180.02562 * 3 2 1 31 31 H 1.08998 * 109.47443 * 299.99905 * 3 2 1 32 32 H 1.08997 * 109.46814 * 60.00720 * 3 2 1 33 33 H 1.09006 * 109.47012 * 299.99838 * 4 2 1 34 34 H 1.09002 * 109.47185 * 59.99546 * 4 2 1 35 35 H 1.09001 * 109.47357 * 179.97438 * 4 2 1 36 36 H 1.07994 * 120.00222 * 0.02562 * 6 5 2 37 37 H 1.07998 * 119.99829 * 179.97438 * 7 6 5 38 38 H 1.09001 * 109.47612 * 330.00363 * 9 8 7 39 39 H 1.09001 * 109.47122 * 210.00194 * 9 8 7 40 40 H 1.09001 * 109.47002 * 299.99404 * 10 9 8 41 41 H 1.08993 * 109.46955 * 59.99842 * 10 9 8 42 42 H 0.96992 * 119.99966 * 359.97438 * 11 10 9 43 43 H 1.08007 * 120.75843 * 179.97438 * 15 13 12 44 44 H 1.08994 * 109.46934 * 60.00044 * 17 16 15 45 45 H 0.96697 * 113.99923 * 179.97438 * 18 17 16 46 46 H 1.07998 * 119.54881 * 180.02562 * 23 16 15 47 47 H 1.08003 * 119.99904 * 179.72588 * 25 8 7 48 48 H 1.08006 * 120.00456 * 180.22715 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4839 1.7565 0.0000 4 6 2.4840 -0.8781 -1.5212 5 6 2.4857 -0.8806 1.5251 6 6 2.7161 -2.2432 1.4908 7 6 3.1764 -2.8950 2.6196 8 6 3.4058 -2.1842 3.7829 9 6 3.9071 -2.8949 5.0136 10 6 5.4372 -2.8949 5.0149 11 7 5.9244 -3.5853 6.2117 12 6 7.2923 -3.7119 6.4334 13 6 7.7492 -4.3690 7.5735 14 9 6.8739 -4.8832 8.4648 15 6 9.1133 -4.4876 7.7802 16 6 9.9758 -3.9443 6.8374 17 6 11.4680 -4.0489 7.0212 18 8 11.8443 -3.4036 8.2394 19 14 12.3293 -3.2238 5.5902 20 1 13.7996 -3.3275 5.7710 21 1 11.9384 -3.8939 4.3240 22 1 11.9367 -1.7927 5.5346 23 6 9.4530 -3.3064 5.7305 24 7 8.1482 -3.2119 5.5561 25 6 3.1699 -0.8227 3.8188 26 6 2.7147 -0.1700 2.6885 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.5739 1.7565 -0.0005 31 1 2.1206 2.2703 -0.8900 32 1 2.1207 2.2702 0.8900 33 1 2.1206 -1.9058 -1.5213 34 1 2.1206 -0.3643 -2.4112 35 1 3.5740 -0.8777 -1.5215 36 1 2.5365 -2.7986 0.5822 37 1 3.3561 -3.9596 2.5929 38 1 3.5439 -3.9226 5.0131 39 1 3.5430 -2.3813 5.9034 40 1 5.8013 -3.4086 4.1252 41 1 5.8004 -1.8673 5.0155 42 1 5.2936 -3.9535 6.8498 43 1 9.4977 -4.9912 8.6550 44 1 11.7561 -5.0993 7.0624 45 1 12.7932 -3.4324 8.4229 46 1 10.1208 -2.8830 4.9949 47 1 3.3449 -0.2682 4.7289 48 1 2.5338 0.8945 2.7155 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_12221184_17656566.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:34:47 Heat of formation + Delta-G solvation = -55.126767 kcal Electronic energy + Delta-G solvation = -26789.128365 eV Core-core repulsion = 22881.688761 eV Total energy + Delta-G solvation = -3907.439604 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 348.154 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -49.98674 -41.43311 -40.14321 -38.17047 -37.09546 -34.27267 -33.24992 -31.80799 -31.66487 -29.57371 -28.93569 -28.29778 -28.27711 -26.35255 -25.45619 -23.70719 -23.41613 -22.77286 -21.76390 -19.39145 -18.68147 -18.31222 -18.03533 -17.35012 -17.06771 -16.53975 -16.45244 -16.11189 -15.82999 -15.63809 -15.39693 -15.08247 -14.66940 -14.42767 -14.26142 -14.24983 -14.12788 -14.03757 -14.02379 -13.79749 -13.73324 -13.67555 -13.18613 -13.12125 -12.97746 -12.77101 -12.71570 -12.60447 -12.48984 -12.03887 -12.00768 -11.83253 -11.32059 -10.89205 -10.79979 -10.77280 -10.76025 -10.71399 -10.25819 -9.75402 -9.51350 -8.81437 -0.15101 0.08092 0.33966 0.57237 1.17897 1.48157 1.55010 1.86473 1.92680 1.94337 2.03001 2.12044 2.47179 2.67897 2.94818 2.98288 3.20823 3.40301 3.67202 3.81442 3.87678 3.92443 4.01739 4.13768 4.21285 4.21451 4.37888 4.46838 4.52955 4.59333 4.65547 4.68119 4.83074 4.83720 4.86022 4.87937 4.88961 4.90000 4.93414 4.93785 4.96444 5.12340 5.23511 5.32429 5.49872 5.58656 5.61924 5.66626 5.70252 5.72344 5.86973 6.12405 6.20981 6.84890 6.90781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.462 4.462 2 Si 1.124 2.876 3 C -0.462 4.462 4 C -0.461 4.461 5 C -0.385 4.385 6 C -0.100 4.100 7 C -0.140 4.140 8 C -0.083 4.083 9 C -0.085 4.085 10 C 0.148 3.852 11 N -0.716 5.716 12 C 0.376 3.624 13 C -0.033 4.033 14 F -0.137 7.137 15 C -0.036 4.036 16 C -0.167 4.167 17 C -0.066 4.066 18 O -0.564 6.564 19 Si 0.968 3.032 20 H -0.248 1.248 21 H -0.253 1.253 22 H -0.269 1.269 23 C 0.131 3.869 24 N -0.531 5.531 25 C -0.141 4.141 26 C -0.101 4.101 27 H 0.066 0.934 28 H 0.074 0.926 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.067 0.933 36 H 0.135 0.865 37 H 0.126 0.874 38 H 0.087 0.913 39 H 0.086 0.914 40 H 0.059 0.941 41 H 0.057 0.943 42 H 0.418 0.582 43 H 0.165 0.835 44 H 0.103 0.897 45 H 0.400 0.600 46 H 0.168 0.832 47 H 0.125 0.875 48 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.418 -0.707 -1.498 2.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.568 4.568 2 Si 1.311 2.689 3 C -0.569 4.569 4 C -0.569 4.569 5 C -0.424 4.424 6 C -0.118 4.118 7 C -0.158 4.158 8 C -0.083 4.083 9 C -0.123 4.123 10 C 0.025 3.975 11 N -0.350 5.350 12 C 0.138 3.862 13 C -0.059 4.059 14 F -0.116 7.116 15 C -0.062 4.062 16 C -0.173 4.173 17 C -0.177 4.177 18 O -0.373 6.373 19 Si 0.792 3.208 20 H -0.172 1.172 21 H -0.178 1.178 22 H -0.194 1.194 23 C -0.026 4.026 24 N -0.249 5.249 25 C -0.159 4.159 26 C -0.118 4.118 27 H 0.085 0.915 28 H 0.093 0.907 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.093 0.907 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.093 0.907 35 H 0.086 0.914 36 H 0.152 0.848 37 H 0.144 0.856 38 H 0.106 0.894 39 H 0.105 0.895 40 H 0.077 0.923 41 H 0.075 0.925 42 H 0.257 0.743 43 H 0.182 0.818 44 H 0.121 0.879 45 H 0.251 0.749 46 H 0.184 0.816 47 H 0.143 0.857 48 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 0.782 0.258 -2.974 3.086 hybrid contribution 0.261 -0.986 1.726 2.005 sum 1.043 -0.728 -1.248 1.782 Atomic orbital electron populations 1.26282 1.21652 1.04400 1.04499 0.77185 0.65190 0.64628 0.61880 1.26279 1.06339 1.19496 1.04784 1.26274 1.06344 1.08452 1.15785 1.27905 1.03763 0.99652 1.11119 1.21366 0.97074 0.95157 0.98211 1.21369 1.00715 1.00349 0.93355 1.19761 0.99333 0.94127 0.95100 1.20729 0.93396 1.01799 0.96353 1.21159 0.93173 0.96626 0.86587 1.44576 1.01443 1.62075 1.26896 1.18573 0.87233 0.91535 0.88906 1.18090 0.88593 1.07759 0.91484 1.91471 1.68244 1.85410 1.66462 1.21465 0.89636 0.95681 0.99400 1.20123 0.96375 1.03999 0.96762 1.24525 0.93320 1.02854 0.97002 1.86455 1.31451 1.79422 1.40001 0.85430 0.79481 0.79404 0.76475 1.17172 1.17755 1.19389 1.22589 0.90336 0.93474 0.96173 1.67321 1.03899 1.23810 1.29856 1.21363 1.00779 0.94298 0.99426 1.21361 0.97128 1.00489 0.92861 0.91475 0.90704 0.91444 0.91407 0.90684 0.91016 0.90967 0.90685 0.91389 0.84769 0.85585 0.89409 0.89541 0.92263 0.92504 0.74333 0.81776 0.87911 0.74883 0.81567 0.85709 0.84840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 1.22 8.65 113.37 0.98 2.20 16 2 Si 1.12 -5.19 12.32 68.60 0.85 -4.34 16 3 C -0.46 1.45 8.53 113.37 0.97 2.42 16 4 C -0.46 1.51 8.53 113.37 0.97 2.48 16 5 C -0.38 -0.18 4.59 22.27 0.10 -0.08 16 6 C -0.10 -0.15 9.29 22.27 0.21 0.06 16 7 C -0.14 -0.35 9.70 22.27 0.22 -0.13 16 8 C -0.08 -0.20 5.13 -19.87 -0.10 -0.30 16 9 C -0.09 0.06 5.46 29.85 0.16 0.23 16 10 C 0.15 0.36 5.68 86.38 0.49 0.85 16 11 N -0.72 -2.35 5.71 -344.81 -1.97 -4.31 16 12 C 0.38 2.66 7.49 133.06 1.00 3.66 16 13 C -0.03 -0.20 7.35 22.58 0.17 -0.04 16 14 F -0.14 -0.87 16.65 44.97 0.75 -0.13 16 15 C -0.04 -0.13 9.75 22.48 0.22 0.09 16 16 C -0.17 -0.47 5.43 -19.76 -0.11 -0.58 16 17 C -0.07 0.18 2.83 71.24 0.20 0.38 16 18 O -0.56 1.01 12.75 -148.98 -1.90 -0.89 16 19 Si 0.97 -2.77 25.10 68.60 1.72 -1.05 16 20 H -0.25 0.87 7.11 99.48 0.71 1.57 16 21 H -0.25 0.44 7.11 99.48 0.71 1.15 16 22 H -0.27 -0.33 7.11 99.48 0.71 0.38 16 23 C 0.13 0.66 9.84 84.62 0.83 1.49 16 24 N -0.53 -4.42 9.57 -193.03 -1.85 -6.27 16 25 C -0.14 -0.38 9.70 22.27 0.22 -0.17 16 26 C -0.10 -0.17 9.29 22.27 0.21 0.04 16 27 H 0.07 -0.13 7.96 -2.39 -0.02 -0.15 16 28 H 0.07 -0.25 7.96 -2.39 -0.02 -0.27 16 29 H 0.07 -0.14 7.96 -2.38 -0.02 -0.15 16 30 H 0.07 -0.15 7.96 -2.39 -0.02 -0.17 16 31 H 0.07 -0.27 7.96 -2.39 -0.02 -0.29 16 32 H 0.07 -0.25 7.69 -2.39 -0.02 -0.26 16 33 H 0.07 -0.26 7.69 -2.38 -0.02 -0.28 16 34 H 0.07 -0.28 7.96 -2.39 -0.02 -0.30 16 35 H 0.07 -0.16 7.96 -2.39 -0.02 -0.18 16 36 H 0.13 -0.32 7.43 -2.91 -0.02 -0.34 16 37 H 0.13 -0.01 8.06 -2.91 -0.02 -0.04 16 38 H 0.09 -0.21 8.09 -2.39 -0.02 -0.23 16 39 H 0.09 -0.18 8.08 -2.39 -0.02 -0.20 16 40 H 0.06 0.27 8.14 -2.39 -0.02 0.25 16 41 H 0.06 0.28 8.14 -2.39 -0.02 0.26 16 42 H 0.42 0.05 7.94 -92.71 -0.74 -0.69 16 43 H 0.16 0.02 8.06 -2.91 -0.02 0.00 16 44 H 0.10 -0.77 7.96 -2.39 -0.02 -0.79 16 45 H 0.40 -4.36 8.74 -74.06 -0.65 -5.01 16 46 H 0.17 0.24 4.88 -2.91 -0.01 0.23 16 47 H 0.12 0.04 8.06 -2.91 -0.02 0.02 16 48 H 0.13 -0.28 7.43 -2.91 -0.02 -0.30 16 Total: 0.00 -14.86 402.79 4.67 -10.20 By element: Atomic # 1 Polarization: -6.13 SS G_CDS: 0.34 Total: -5.79 kcal Atomic # 6 Polarization: 5.87 SS G_CDS: 6.72 Total: 12.59 kcal Atomic # 7 Polarization: -6.77 SS G_CDS: -3.81 Total: -10.58 kcal Atomic # 8 Polarization: 1.01 SS G_CDS: -1.90 Total: -0.89 kcal Atomic # 9 Polarization: -0.87 SS G_CDS: 0.75 Total: -0.13 kcal Atomic # 14 Polarization: -7.96 SS G_CDS: 2.57 Total: -5.39 kcal Total: -14.86 4.67 -10.20 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12221184_17656566.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.930 kcal (2) G-P(sol) polarization free energy of solvation -14.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -10.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds