Wall clock time and date at job start Mon Mar 8 2021 05:58:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46497 * 119.99904 * 2 1 4 4 C 1.53005 * 109.47002 * 269.99932 * 3 2 1 5 5 H 1.08996 * 112.85546 * 316.19601 * 4 3 2 6 6 C 1.53782 * 113.61412 * 87.50614 * 4 3 2 7 7 C 1.53773 * 87.08289 * 139.97968 * 6 4 3 8 8 H 1.08994 * 113.69462 * 89.12861 * 7 6 4 9 9 O 1.42901 * 113.61353 * 220.01657 * 7 6 4 10 10 C 1.53784 * 113.61286 * 185.00124 * 4 3 2 11 11 C 1.38617 * 120.00270 * 180.02562 * 2 1 3 12 12 N 1.29677 * 124.95049 * 180.02562 * 11 2 1 13 13 C 1.32124 * 116.86660 * 179.97438 * 12 11 2 14 14 C 1.33325 * 114.57827 * 0.02562 * 13 12 11 15 15 C 1.50698 * 125.94939 * 179.97438 * 14 13 12 16 16 O 1.42901 * 109.47214 * 245.02126 * 15 14 13 17 17 Si 1.86295 * 109.47290 * 5.02184 * 15 14 13 18 18 S 1.70965 * 124.94540 * 359.97438 * 11 2 1 19 19 H 1.09002 * 109.46765 * 270.00003 * 1 2 3 20 20 H 1.08998 * 109.47169 * 30.00213 * 1 2 3 21 21 H 1.09001 * 109.46916 * 150.00174 * 1 2 3 22 22 H 1.08997 * 109.47604 * 30.00302 * 3 2 1 23 23 H 1.09002 * 109.47545 * 150.00466 * 3 2 1 24 24 H 1.09001 * 113.61526 * 254.52905 * 6 4 3 25 25 H 1.09003 * 113.61350 * 25.42760 * 6 4 3 26 26 H 0.96697 * 114.00538 * 277.50162 * 9 7 6 27 27 H 1.08999 * 113.61289 * 334.56507 * 10 4 3 28 28 H 1.08998 * 113.61877 * 105.47241 * 10 4 3 29 29 H 1.08000 * 122.70899 * 179.97438 * 13 12 11 30 30 H 1.09002 * 109.47088 * 125.02436 * 15 14 13 31 31 H 0.96698 * 114.00180 * 180.02562 * 16 15 14 32 32 H 1.48497 * 110.00228 * 299.99939 * 17 15 14 33 33 H 1.48506 * 110.00154 * 61.32122 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 -1.4426 5 1 2.7834 0.8931 -2.0833 6 6 1.3071 2.5420 -2.0438 7 6 2.3901 3.4192 -2.6935 8 1 2.7040 3.0708 -3.6774 9 8 2.0860 4.8153 -2.6702 10 6 3.3232 2.9729 -1.5554 11 6 2.1581 -1.2004 -0.0005 12 7 3.4501 -1.3123 -0.0001 13 6 3.9433 -2.5380 -0.0002 14 6 3.0255 -3.5051 -0.0013 15 6 3.3013 -4.9866 -0.0022 16 8 2.8298 -5.5582 -1.2241 17 14 5.1350 -5.2769 0.1521 18 16 1.4342 -2.7492 -0.0006 19 1 -0.3633 0.0000 1.0277 20 1 -0.3633 0.8899 -0.5139 21 1 -0.3633 -0.8900 -0.5138 22 1 1.6085 2.0284 0.5138 23 1 3.1499 1.1384 0.5138 24 1 0.7001 1.9929 -2.7636 25 1 0.7099 3.0663 -1.2977 26 1 1.4995 5.1021 -3.3835 27 1 3.2772 3.6151 -0.6759 28 1 4.3438 2.7718 -1.8810 29 1 5.0042 -2.7402 -0.0003 30 1 2.7876 -5.4523 0.8388 31 1 2.9742 -6.5118 -1.2937 32 1 5.8469 -4.6469 -0.9886 33 1 5.6322 -4.7152 1.4338 There are 44 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 44 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_12312126_15704118.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:58:15 Heat of formation + Delta-G solvation = 6.226388 kcal Electronic energy + Delta-G solvation = -17095.784827 eV Core-core repulsion = 14251.352488 eV Total energy + Delta-G solvation = -2844.432339 eV No. of doubly occupied orbitals = 44 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 257.087 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.11994 -40.35109 -38.17681 -37.39872 -35.81966 -32.07175 -29.94496 -28.21141 -26.74471 -25.53565 -24.66254 -23.12331 -20.71408 -20.48870 -19.46690 -18.52750 -18.41015 -17.43878 -16.85076 -16.36496 -16.15421 -15.98512 -15.41397 -15.19887 -14.78824 -14.74746 -14.32231 -14.18023 -13.57972 -13.42924 -13.20304 -12.93034 -12.81914 -12.42192 -12.39870 -12.12829 -11.85420 -11.42499 -11.12457 -10.76098 -10.70752 -10.38731 -10.19478 -8.71507 -5.00945 -0.23166 -0.03208 0.57066 1.41834 1.64577 1.71377 1.75503 1.99995 3.20888 3.35180 3.45572 3.48839 3.57083 3.77185 3.89067 3.89767 4.03945 4.19194 4.23885 4.25416 4.47774 4.49936 4.53261 4.68621 4.71711 4.73548 4.76078 4.86307 4.96182 5.08040 5.33042 5.64795 5.84544 6.74200 6.83131 6.89210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.577 5.577 3 C 0.145 3.855 4 C -0.117 4.117 5 H 0.074 0.926 6 C -0.151 4.151 7 C 0.074 3.926 8 H 0.086 0.914 9 O -0.579 6.579 10 C -0.125 4.125 11 C 0.303 3.697 12 N -0.577 5.577 13 C 0.068 3.932 14 C -0.274 4.274 15 C -0.039 4.039 16 O -0.566 6.566 17 Si 0.804 3.196 18 S 0.148 5.852 19 H 0.074 0.926 20 H 0.103 0.897 21 H 0.071 0.929 22 H 0.102 0.898 23 H 0.070 0.930 24 H 0.074 0.926 25 H 0.097 0.903 26 H 0.395 0.605 27 H 0.091 0.909 28 H 0.069 0.931 29 H 0.163 0.837 30 H 0.094 0.906 31 H 0.406 0.594 32 H -0.297 1.297 33 H -0.288 1.288 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.775 -3.230 0.089 4.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.295 5.295 3 C 0.020 3.980 4 C -0.137 4.137 5 H 0.093 0.907 6 C -0.189 4.189 7 C 0.015 3.985 8 H 0.104 0.896 9 O -0.387 6.387 10 C -0.163 4.163 11 C -0.066 4.066 12 N -0.303 5.303 13 C -0.083 4.083 14 C -0.398 4.398 15 C -0.150 4.150 16 O -0.377 6.377 17 Si 0.708 3.292 18 S 0.398 5.602 19 H 0.093 0.907 20 H 0.121 0.879 21 H 0.089 0.911 22 H 0.120 0.880 23 H 0.088 0.912 24 H 0.093 0.907 25 H 0.116 0.884 26 H 0.245 0.755 27 H 0.109 0.891 28 H 0.087 0.913 29 H 0.179 0.821 30 H 0.112 0.888 31 H 0.257 0.743 32 H -0.225 1.225 33 H -0.215 1.215 Dipole moment (debyes) X Y Z Total from point charges -3.663 -1.993 0.589 4.211 hybrid contribution 0.459 0.353 -0.555 0.802 sum -3.204 -1.640 0.034 3.599 Atomic orbital electron populations 1.22108 0.75555 1.04703 1.03514 1.46220 1.06024 1.00630 1.76674 1.21534 0.97317 0.83338 0.95784 1.22587 0.97909 0.96002 0.97176 0.90738 1.23699 0.96708 0.97562 1.00927 1.23354 0.96352 0.80703 0.98116 0.89620 1.86487 1.71525 1.24270 1.56457 1.23073 0.98236 0.95879 0.99155 1.23964 0.91379 0.93321 0.97927 1.66372 1.10200 1.25235 1.28538 1.21223 1.00360 0.86105 1.00618 1.25335 0.94940 0.99928 1.19569 1.24210 1.13229 0.87173 0.90366 1.86459 1.84926 1.29274 1.36991 0.94291 0.70552 0.88203 0.76168 1.83737 1.08319 0.95470 1.72645 0.90734 0.87895 0.91074 0.87968 0.91169 0.90702 0.88428 0.75547 0.89076 0.91265 0.82063 0.88828 0.74255 1.22490 1.21544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 -0.34 10.41 127.77 1.33 0.99 16 2 N -0.58 -1.45 2.98 -735.81 -2.19 -3.64 16 3 C 0.14 0.20 5.36 86.38 0.46 0.67 16 4 C -0.12 -0.15 3.96 -10.26 -0.04 -0.19 16 5 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 6 C -0.15 0.31 7.04 31.12 0.22 0.53 16 7 C 0.07 0.03 5.21 31.12 0.16 0.20 16 8 H 0.09 -0.07 8.14 -2.39 -0.02 -0.09 16 9 O -0.58 -1.18 13.67 -148.98 -2.04 -3.21 16 10 C -0.13 -0.26 7.47 31.12 0.23 -0.02 16 11 C 0.30 2.42 7.74 179.32 1.39 3.81 16 12 N -0.58 -7.11 9.82 -202.03 -1.98 -9.09 16 13 C 0.07 0.75 10.07 83.54 0.84 1.59 16 14 C -0.27 -2.16 5.95 24.57 0.15 -2.01 16 15 C -0.04 -0.04 3.07 71.24 0.22 0.18 16 16 O -0.57 -0.48 12.86 -148.98 -1.92 -2.40 16 17 Si 0.80 -0.99 30.50 68.60 2.09 1.10 16 18 S 0.15 0.84 21.68 -56.49 -1.22 -0.39 16 19 H 0.07 -0.44 8.14 -2.39 -0.02 -0.46 16 20 H 0.10 -0.79 7.64 -2.39 -0.02 -0.81 16 21 H 0.07 -0.29 7.04 -2.39 -0.02 -0.30 16 22 H 0.10 -0.28 7.77 -2.39 -0.02 -0.30 16 23 H 0.07 0.39 7.62 -2.39 -0.02 0.37 16 24 H 0.07 -0.22 8.14 -2.39 -0.02 -0.24 16 25 H 0.10 -0.31 7.90 -2.39 -0.02 -0.33 16 26 H 0.39 -2.45 9.12 -74.06 -0.68 -3.13 16 27 H 0.09 0.21 8.10 -2.39 -0.02 0.19 16 28 H 0.07 0.22 8.14 -2.39 -0.02 0.20 16 29 H 0.16 1.55 5.87 -2.91 -0.02 1.53 16 30 H 0.09 -0.29 7.96 -2.39 -0.02 -0.30 16 31 H 0.41 -4.23 8.74 -74.06 -0.65 -4.88 16 32 H -0.30 -1.95 7.11 99.48 0.71 -1.24 16 33 H -0.29 -1.28 7.11 99.48 0.71 -0.58 16 Total: 0.00 -19.44 290.48 -2.45 -21.89 By element: Atomic # 1 Polarization: -9.82 SS G_CDS: -0.15 Total: -9.98 kcal Atomic # 6 Polarization: 0.76 SS G_CDS: 4.96 Total: 5.72 kcal Atomic # 7 Polarization: -8.56 SS G_CDS: -4.17 Total: -12.73 kcal Atomic # 8 Polarization: -1.66 SS G_CDS: -3.95 Total: -5.61 kcal Atomic # 14 Polarization: -0.99 SS G_CDS: 2.09 Total: 1.10 kcal Atomic # 16 Polarization: 0.84 SS G_CDS: -1.22 Total: -0.39 kcal Total: -19.44 -2.45 -21.89 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12312126_15704118.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.113 kcal (2) G-P(sol) polarization free energy of solvation -19.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.887 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds