Wall clock time and date at job start Mon Mar 8 2021 05:58:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.33323 * 125.94692 * 2 1 4 4 C 1.50695 * 122.71634 * 359.95816 * 3 2 1 5 5 O 1.42900 * 109.47422 * 113.28301 * 4 3 2 6 6 Si 1.86293 * 109.47623 * 233.28738 * 4 3 2 7 7 N 1.32123 * 114.57819 * 179.69951 * 3 2 1 8 8 C 1.29687 * 116.86312 * 0.25696 * 7 3 2 9 9 N 1.38610 * 124.94649 * 179.97438 * 8 7 3 10 10 C 1.46501 * 120.00333 * 0.02562 * 9 8 7 11 11 C 1.46508 * 119.99715 * 180.02562 * 9 8 7 12 12 C 1.53000 * 109.46757 * 90.00441 * 11 9 8 13 13 H 1.09000 * 112.85153 * 43.80664 * 12 11 9 14 14 C 1.53784 * 113.61146 * 174.99875 * 12 11 9 15 15 C 1.53782 * 87.08069 * 139.98223 * 14 12 11 16 16 H 1.08994 * 113.61239 * 89.11692 * 15 14 12 17 17 O 1.42900 * 113.61069 * 219.93536 * 15 14 12 18 18 C 1.53777 * 87.08061 * 334.56619 * 15 14 12 19 19 S 1.70961 * 110.10455 * 0.02562 * 8 7 3 20 20 H 1.09001 * 109.47277 * 84.91931 * 1 2 3 21 21 H 1.09001 * 109.46610 * 204.91572 * 1 2 3 22 22 H 1.09004 * 109.47045 * 324.91722 * 1 2 3 23 23 H 1.09010 * 109.46998 * 353.28757 * 4 3 2 24 24 H 0.96698 * 114.00606 * 180.02562 * 5 4 3 25 25 H 1.48508 * 110.00441 * 178.67863 * 6 4 3 26 26 H 1.48496 * 109.99952 * 299.99718 * 6 4 3 27 27 H 1.08997 * 109.47349 * 89.99324 * 10 9 8 28 28 H 1.08998 * 109.46879 * 209.99944 * 10 9 8 29 29 H 1.09001 * 109.46385 * 329.99225 * 10 9 8 30 30 H 1.08997 * 109.47087 * 210.00300 * 11 9 8 31 31 H 1.08999 * 109.47084 * 330.00606 * 11 9 8 32 32 H 1.09003 * 113.61486 * 254.53220 * 14 12 11 33 33 H 1.09003 * 113.61681 * 25.34860 * 14 12 11 34 34 H 0.96703 * 113.99577 * 179.97438 * 17 15 14 35 35 H 1.09000 * 113.61962 * 270.88674 * 18 15 14 36 36 H 1.09004 * 113.61444 * 139.98145 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2897 1.0793 0.0000 4 6 1.7414 2.4830 -0.0009 5 8 2.0634 3.1210 1.2365 6 14 2.4942 3.4430 -1.4088 7 7 3.5850 0.8189 0.0063 8 6 3.9315 -0.4308 0.0064 9 7 5.2384 -0.8924 0.0120 10 6 6.3517 0.0599 0.0190 11 6 5.5066 -2.3328 0.0110 12 6 5.6070 -2.8317 -1.4319 13 1 6.1944 -2.1702 -2.0686 14 6 6.0081 -4.3120 -1.5452 15 6 4.9854 -4.4202 -2.6886 16 1 5.4019 -4.1931 -3.6698 17 8 4.2350 -5.6362 -2.6720 18 6 4.2531 -3.2334 -2.0405 19 16 2.5414 -1.4260 -0.0027 20 1 -0.3634 0.0910 -1.0236 21 1 -0.3632 -0.9321 0.4330 22 1 -0.3633 0.8410 0.5907 23 1 0.6585 2.4500 -0.1217 24 1 1.7404 4.0298 1.3063 25 1 1.9377 4.8195 -1.4401 26 1 3.9703 3.4953 -1.2559 27 1 6.6227 0.2945 1.0483 28 1 7.2087 -0.3794 -0.4914 29 1 6.0516 0.9731 -0.4950 30 1 6.4455 -2.5279 0.5291 31 1 4.6956 -2.8537 0.5199 32 1 7.0391 -4.4617 -1.8660 33 1 5.7479 -4.9034 -0.6674 34 1 3.5897 -5.7099 -3.3885 35 1 3.5117 -3.5301 -1.2985 36 1 3.8671 -2.5123 -2.7610 There are 47 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 47 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_12312126_15704122.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:58:18 Heat of formation + Delta-G solvation = 2.405264 kcal Electronic energy + Delta-G solvation = -19270.938581 eV Core-core repulsion = 16270.802926 eV Total energy + Delta-G solvation = -3000.135655 eV No. of doubly occupied orbitals = 47 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 271.103 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.00667 -40.49487 -38.15448 -37.19227 -35.77116 -33.24065 -29.86816 -29.28903 -27.40834 -26.70895 -25.58107 -24.07856 -22.39345 -20.72693 -19.71798 -19.18532 -18.54644 -18.37532 -17.40869 -16.74634 -16.15855 -15.99921 -15.75650 -15.47455 -15.09851 -14.83561 -14.55201 -14.01381 -13.86320 -13.61842 -13.55643 -13.51989 -13.29443 -13.11398 -12.93577 -12.77211 -12.44570 -12.17443 -11.96864 -11.56356 -11.40096 -10.92944 -10.75884 -10.39636 -10.26632 -9.83258 -8.39622 -4.85550 0.10926 0.26907 0.87416 1.36572 1.73158 1.82572 1.96345 2.28221 3.15864 3.30898 3.47664 3.50891 3.64146 3.71376 3.86045 4.04867 4.10066 4.16296 4.22445 4.28179 4.33944 4.44677 4.54690 4.68418 4.69104 4.70641 4.71560 4.86078 4.89542 4.96292 4.98962 5.05813 5.26824 5.29416 5.75873 6.07651 6.51548 6.66491 7.10819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.253 4.253 3 C 0.118 3.882 4 C -0.038 4.038 5 O -0.529 6.529 6 Si 0.694 3.306 7 N -0.535 5.535 8 C 0.319 3.681 9 N -0.583 5.583 10 C 0.102 3.898 11 C 0.135 3.865 12 C -0.133 4.133 13 H 0.100 0.900 14 C -0.121 4.121 15 C 0.077 3.923 16 H 0.082 0.918 17 O -0.560 6.560 18 C -0.165 4.165 19 S 0.104 5.896 20 H 0.075 0.925 21 H 0.067 0.933 22 H 0.076 0.924 23 H 0.080 0.920 24 H 0.378 0.622 25 H -0.261 1.261 26 H -0.247 1.247 27 H 0.053 0.947 28 H 0.070 0.930 29 H 0.077 0.923 30 H 0.093 0.907 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.093 0.907 34 H 0.380 0.620 35 H 0.093 0.907 36 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.038 -1.550 -3.418 3.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.376 4.376 3 C -0.012 4.012 4 C -0.150 4.150 5 O -0.335 6.335 6 Si 0.593 3.407 7 N -0.260 5.260 8 C -0.051 4.051 9 N -0.302 5.302 10 C -0.042 4.042 11 C 0.012 3.988 12 C -0.153 4.153 13 H 0.118 0.882 14 C -0.159 4.159 15 C 0.018 3.982 16 H 0.100 0.900 17 O -0.365 6.365 18 C -0.203 4.203 19 S 0.356 5.644 20 H 0.094 0.906 21 H 0.086 0.914 22 H 0.094 0.906 23 H 0.097 0.903 24 H 0.226 0.774 25 H -0.186 1.186 26 H -0.171 1.171 27 H 0.071 0.929 28 H 0.089 0.911 29 H 0.096 0.904 30 H 0.111 0.889 31 H 0.097 0.903 32 H 0.096 0.904 33 H 0.112 0.888 34 H 0.227 0.773 35 H 0.112 0.888 36 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.524 -2.286 -2.989 3.799 hybrid contribution -0.738 1.661 0.566 1.903 sum -0.214 -0.626 -2.423 2.511 Atomic orbital electron populations 1.20164 0.86917 1.03056 1.02732 1.25099 1.01059 0.93520 1.17898 1.18772 0.86648 0.94382 1.01430 1.24263 1.01939 0.93080 0.95734 1.86638 1.81420 1.31027 1.34439 0.94818 0.81925 0.79424 0.84525 1.66061 1.17285 1.16335 1.26302 1.23297 0.91259 0.91537 0.99021 1.45852 1.00260 1.05820 1.78264 1.21664 0.87552 0.93130 1.01876 1.21651 1.02936 0.78146 0.96114 1.22884 0.98654 0.96597 0.97163 0.88207 1.23069 0.98970 0.94774 0.99090 1.23297 0.92984 0.83970 0.97924 0.90015 1.86528 1.55439 1.39339 1.55210 1.23852 0.96803 0.98481 1.01179 1.83920 0.96478 1.09909 1.74140 0.90621 0.91355 0.90577 0.90257 0.77382 1.18643 1.17057 0.92872 0.91136 0.90377 0.88899 0.90328 0.90416 0.88817 0.77283 0.88819 0.91014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 0.03 9.71 36.01 0.35 0.38 16 2 C -0.25 -0.60 6.57 -36.02 -0.24 -0.84 16 3 C 0.12 0.46 5.22 -84.19 -0.44 0.02 16 4 C -0.04 -0.08 2.82 36.00 0.10 0.02 16 5 O -0.53 -1.76 12.86 -35.23 -0.45 -2.22 16 6 Si 0.69 0.93 32.62 -169.99 -5.54 -4.62 16 7 N -0.53 -2.79 8.98 -11.37 -0.10 -2.89 16 8 C 0.32 1.06 7.74 -87.68 -0.68 0.39 16 9 N -0.58 -0.73 2.98 -183.92 -0.55 -1.28 16 10 C 0.10 0.04 10.56 59.85 0.63 0.67 16 11 C 0.13 -0.14 5.22 -4.04 -0.02 -0.16 16 12 C -0.13 0.22 3.96 -89.81 -0.36 -0.14 16 13 H 0.10 -0.16 8.14 -51.93 -0.42 -0.58 16 14 C -0.12 0.18 7.47 -25.92 -0.19 -0.02 16 15 C 0.08 -0.08 5.21 -25.92 -0.14 -0.22 16 16 H 0.08 -0.17 8.14 -51.93 -0.42 -0.59 16 17 O -0.56 -0.15 13.67 -35.23 -0.48 -0.63 16 18 C -0.17 0.18 6.41 -25.92 -0.17 0.01 16 19 S 0.10 0.18 19.39 -107.50 -2.08 -1.91 16 20 H 0.08 -0.15 8.14 -51.93 -0.42 -0.58 16 21 H 0.07 -0.06 8.14 -51.93 -0.42 -0.49 16 22 H 0.08 -0.06 7.18 -51.93 -0.37 -0.44 16 23 H 0.08 -0.05 6.34 -51.92 -0.33 -0.38 16 24 H 0.38 -0.47 8.74 45.56 0.40 -0.07 16 25 H -0.26 -0.61 7.11 56.52 0.40 -0.21 16 26 H -0.25 -1.35 7.11 56.52 0.40 -0.95 16 27 H 0.05 0.03 8.14 -51.93 -0.42 -0.39 16 28 H 0.07 -0.13 8.07 -51.93 -0.42 -0.55 16 29 H 0.08 0.17 7.62 -51.93 -0.40 -0.23 16 30 H 0.09 -0.23 8.07 -51.93 -0.42 -0.65 16 31 H 0.08 -0.06 6.75 -51.93 -0.35 -0.41 16 32 H 0.08 -0.16 8.14 -51.93 -0.42 -0.58 16 33 H 0.09 -0.09 8.10 -51.93 -0.42 -0.51 16 34 H 0.38 -1.35 9.12 45.56 0.42 -0.94 16 35 H 0.09 -0.03 6.67 -51.93 -0.35 -0.38 16 36 H 0.07 -0.06 8.14 -51.93 -0.42 -0.48 16 LS Contribution 309.26 15.07 4.66 4.66 Total: 0.00 -8.06 309.26 -10.09 -18.15 By element: Atomic # 1 Polarization: -5.00 SS G_CDS: -4.40 Total: -9.39 kcal Atomic # 6 Polarization: 1.27 SS G_CDS: -1.14 Total: 0.13 kcal Atomic # 7 Polarization: -3.52 SS G_CDS: -0.65 Total: -4.17 kcal Atomic # 8 Polarization: -1.91 SS G_CDS: -0.93 Total: -2.85 kcal Atomic # 14 Polarization: 0.93 SS G_CDS: -5.54 Total: -4.62 kcal Atomic # 16 Polarization: 0.18 SS G_CDS: -2.08 Total: -1.91 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -8.06 -10.09 -18.15 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12312126_15704122.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.557 kcal (2) G-P(sol) polarization free energy of solvation -8.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.152 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds