Wall clock time and date at job start Mon Mar 8 2021 05:58:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.33323 * 125.94692 * 2 1 4 4 C 1.50695 * 122.71634 * 359.95816 * 3 2 1 5 5 O 1.42900 * 109.47422 * 113.28301 * 4 3 2 6 6 Si 1.86293 * 109.47623 * 233.28738 * 4 3 2 7 7 N 1.32123 * 114.57819 * 179.69951 * 3 2 1 8 8 C 1.29687 * 116.86312 * 0.25696 * 7 3 2 9 9 N 1.38610 * 124.94649 * 179.97438 * 8 7 3 10 10 C 1.46501 * 120.00333 * 0.02562 * 9 8 7 11 11 C 1.46508 * 119.99715 * 180.02562 * 9 8 7 12 12 C 1.53000 * 109.46757 * 90.00441 * 11 9 8 13 13 H 1.09000 * 112.85153 * 43.80664 * 12 11 9 14 14 C 1.53784 * 113.61146 * 174.99875 * 12 11 9 15 15 C 1.53782 * 87.08069 * 139.98223 * 14 12 11 16 16 H 1.08994 * 113.61239 * 89.11692 * 15 14 12 17 17 O 1.42900 * 113.61069 * 219.93536 * 15 14 12 18 18 C 1.53777 * 87.08061 * 334.56619 * 15 14 12 19 19 S 1.70961 * 110.10455 * 0.02562 * 8 7 3 20 20 H 1.09001 * 109.47277 * 84.91931 * 1 2 3 21 21 H 1.09001 * 109.46610 * 204.91572 * 1 2 3 22 22 H 1.09004 * 109.47045 * 324.91722 * 1 2 3 23 23 H 1.09010 * 109.46998 * 353.28757 * 4 3 2 24 24 H 0.96698 * 114.00606 * 180.02562 * 5 4 3 25 25 H 1.48508 * 110.00441 * 178.67863 * 6 4 3 26 26 H 1.48496 * 109.99952 * 299.99718 * 6 4 3 27 27 H 1.08997 * 109.47349 * 89.99324 * 10 9 8 28 28 H 1.08998 * 109.46879 * 209.99944 * 10 9 8 29 29 H 1.09001 * 109.46385 * 329.99225 * 10 9 8 30 30 H 1.08997 * 109.47087 * 210.00300 * 11 9 8 31 31 H 1.08999 * 109.47084 * 330.00606 * 11 9 8 32 32 H 1.09003 * 113.61486 * 254.53220 * 14 12 11 33 33 H 1.09003 * 113.61681 * 25.34860 * 14 12 11 34 34 H 0.96703 * 113.99577 * 179.97438 * 17 15 14 35 35 H 1.09000 * 113.61962 * 270.88674 * 18 15 14 36 36 H 1.09004 * 113.61444 * 139.98145 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2897 1.0793 0.0000 4 6 1.7414 2.4830 -0.0009 5 8 2.0634 3.1210 1.2365 6 14 2.4942 3.4430 -1.4088 7 7 3.5850 0.8189 0.0063 8 6 3.9315 -0.4308 0.0064 9 7 5.2384 -0.8924 0.0120 10 6 6.3517 0.0599 0.0190 11 6 5.5066 -2.3328 0.0110 12 6 5.6070 -2.8317 -1.4319 13 1 6.1944 -2.1702 -2.0686 14 6 6.0081 -4.3120 -1.5452 15 6 4.9854 -4.4202 -2.6886 16 1 5.4019 -4.1931 -3.6698 17 8 4.2350 -5.6362 -2.6720 18 6 4.2531 -3.2334 -2.0405 19 16 2.5414 -1.4260 -0.0027 20 1 -0.3634 0.0910 -1.0236 21 1 -0.3632 -0.9321 0.4330 22 1 -0.3633 0.8410 0.5907 23 1 0.6585 2.4500 -0.1217 24 1 1.7404 4.0298 1.3063 25 1 1.9377 4.8195 -1.4401 26 1 3.9703 3.4953 -1.2559 27 1 6.6227 0.2945 1.0483 28 1 7.2087 -0.3794 -0.4914 29 1 6.0516 0.9731 -0.4950 30 1 6.4455 -2.5279 0.5291 31 1 4.6956 -2.8537 0.5199 32 1 7.0391 -4.4617 -1.8660 33 1 5.7479 -4.9034 -0.6674 34 1 3.5897 -5.7099 -3.3885 35 1 3.5117 -3.5301 -1.2985 36 1 3.8671 -2.5123 -2.7610 There are 47 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 47 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_12312126_15704122.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 05:58:18 Heat of formation + Delta-G solvation = 2.110697 kcal Electronic energy + Delta-G solvation = -19270.951354 eV Core-core repulsion = 16270.802926 eV Total energy + Delta-G solvation = -3000.148428 eV No. of doubly occupied orbitals = 47 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 271.103 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.10250 -40.45867 -38.22505 -37.30582 -35.73835 -33.30238 -29.84370 -29.36023 -27.45563 -26.62283 -25.64501 -24.08224 -22.42339 -20.64040 -19.82352 -19.28197 -18.61991 -18.39405 -17.49387 -16.73306 -16.17965 -16.00866 -15.82493 -15.62266 -15.09732 -14.81433 -14.54845 -14.05805 -14.02444 -13.61064 -13.58037 -13.44642 -13.26942 -13.12151 -13.06777 -12.73136 -12.43967 -12.28038 -11.96927 -11.61889 -11.30665 -10.95232 -10.75623 -10.55082 -10.36996 -9.97230 -8.49209 -4.98897 -0.03288 0.15283 0.74314 1.23422 1.56475 1.76075 1.82096 2.12511 3.29162 3.33959 3.49102 3.60523 3.61829 3.81123 3.97774 4.02810 4.14696 4.20079 4.26738 4.28371 4.44002 4.46055 4.56625 4.73939 4.79409 4.80465 4.82886 4.83531 4.89997 5.00503 5.01544 5.16374 5.28112 5.40441 5.74940 5.97142 6.56861 6.89768 6.97003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.255 4.255 3 C 0.090 3.910 4 C -0.045 4.045 5 O -0.554 6.554 6 Si 0.766 3.234 7 N -0.571 5.571 8 C 0.301 3.699 9 N -0.584 5.584 10 C 0.104 3.896 11 C 0.132 3.868 12 C -0.124 4.124 13 H 0.102 0.898 14 C -0.120 4.120 15 C 0.075 3.925 16 H 0.093 0.907 17 O -0.580 6.580 18 C -0.164 4.164 19 S 0.127 5.873 20 H 0.095 0.905 21 H 0.073 0.927 22 H 0.082 0.918 23 H 0.109 0.891 24 H 0.395 0.605 25 H -0.270 1.270 26 H -0.312 1.312 27 H 0.048 0.952 28 H 0.097 0.903 29 H 0.055 0.945 30 H 0.110 0.890 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.394 0.606 35 H 0.086 0.914 36 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.697 -2.190 -3.779 4.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.379 4.379 3 C -0.040 4.040 4 C -0.156 4.156 5 O -0.364 6.364 6 Si 0.671 3.329 7 N -0.297 5.297 8 C -0.069 4.069 9 N -0.303 5.303 10 C -0.040 4.040 11 C 0.010 3.990 12 C -0.144 4.144 13 H 0.121 0.879 14 C -0.158 4.158 15 C 0.016 3.984 16 H 0.111 0.889 17 O -0.388 6.388 18 C -0.202 4.202 19 S 0.378 5.622 20 H 0.113 0.887 21 H 0.092 0.908 22 H 0.100 0.900 23 H 0.127 0.873 24 H 0.245 0.755 25 H -0.196 1.196 26 H -0.240 1.240 27 H 0.067 0.933 28 H 0.115 0.885 29 H 0.074 0.926 30 H 0.128 0.872 31 H 0.093 0.907 32 H 0.105 0.895 33 H 0.106 0.894 34 H 0.243 0.757 35 H 0.104 0.896 36 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.170 -2.931 -3.359 4.461 hybrid contribution -0.481 1.839 0.691 2.023 sum -0.651 -1.092 -2.668 2.955 Atomic orbital electron populations 1.20302 0.84936 1.03613 1.04157 1.25540 1.02466 0.93347 1.16507 1.19098 0.86585 0.95590 1.02701 1.24467 1.03671 0.92376 0.95136 1.86589 1.82032 1.32534 1.35240 0.94036 0.77097 0.78144 0.83630 1.66082 1.18452 1.17598 1.27608 1.23609 0.92426 0.91665 0.99164 1.46086 0.99771 1.06717 1.77744 1.21658 0.88138 0.92590 1.01637 1.21801 1.03634 0.76836 0.96699 1.22799 0.98284 0.96590 0.96704 0.87932 1.23058 0.99404 0.94508 0.98793 1.23406 0.92955 0.83488 0.98576 0.88931 1.86486 1.56117 1.39920 1.56312 1.23807 0.96911 0.98524 1.00969 1.83759 0.95498 1.09225 1.73735 0.88664 0.90815 0.89961 0.87286 0.75459 1.19649 1.23967 0.93302 0.88476 0.92589 0.87189 0.90665 0.89541 0.89386 0.75664 0.89581 0.91403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 0.15 9.71 71.24 0.69 0.84 16 2 C -0.26 -1.19 6.57 24.58 0.16 -1.03 16 3 C 0.09 0.76 5.22 41.40 0.22 0.98 16 4 C -0.05 -0.19 2.82 71.23 0.20 0.01 16 5 O -0.55 -4.04 12.86 -148.98 -1.92 -5.96 16 6 Si 0.77 2.78 32.62 68.60 2.24 5.02 16 7 N -0.57 -6.88 8.98 -189.87 -1.71 -8.59 16 8 C 0.30 2.34 7.74 179.32 1.39 3.73 16 9 N -0.58 -1.89 2.98 -735.80 -2.19 -4.09 16 10 C 0.10 0.19 10.56 127.77 1.35 1.54 16 11 C 0.13 -0.29 5.22 86.38 0.45 0.17 16 12 C -0.12 0.43 3.96 -10.27 -0.04 0.39 16 13 H 0.10 -0.38 8.14 -2.39 -0.02 -0.40 16 14 C -0.12 0.41 7.47 31.12 0.23 0.64 16 15 C 0.07 -0.18 5.21 31.12 0.16 -0.02 16 16 H 0.09 -0.44 8.14 -2.39 -0.02 -0.46 16 17 O -0.58 -0.21 13.67 -148.98 -2.04 -2.24 16 18 C -0.16 0.34 6.41 31.12 0.20 0.54 16 19 S 0.13 0.47 19.39 -56.49 -1.10 -0.63 16 20 H 0.09 -0.56 8.14 -2.39 -0.02 -0.58 16 21 H 0.07 -0.23 8.14 -2.39 -0.02 -0.25 16 22 H 0.08 -0.26 7.18 -2.39 -0.02 -0.28 16 23 H 0.11 -0.26 6.34 -2.38 -0.02 -0.28 16 24 H 0.39 -0.85 8.74 -74.06 -0.65 -1.50 16 25 H -0.27 -1.28 7.11 99.48 0.71 -0.57 16 26 H -0.31 -4.50 7.11 99.48 0.71 -3.79 16 27 H 0.05 0.12 8.14 -2.39 -0.02 0.10 16 28 H 0.10 -0.39 8.07 -2.39 -0.02 -0.41 16 29 H 0.06 0.37 7.62 -2.39 -0.02 0.35 16 30 H 0.11 -0.62 8.07 -2.39 -0.02 -0.64 16 31 H 0.08 -0.10 6.75 -2.39 -0.02 -0.11 16 32 H 0.09 -0.44 8.14 -2.39 -0.02 -0.46 16 33 H 0.09 -0.18 8.10 -2.39 -0.02 -0.20 16 34 H 0.39 -2.85 9.12 -74.05 -0.68 -3.53 16 35 H 0.09 -0.03 6.67 -2.39 -0.02 -0.05 16 36 H 0.07 -0.09 8.14 -2.38 -0.02 -0.11 16 Total: 0.00 -19.96 309.26 -1.88 -21.84 By element: Atomic # 1 Polarization: -12.97 SS G_CDS: -0.19 Total: -13.15 kcal Atomic # 6 Polarization: 2.78 SS G_CDS: 5.01 Total: 7.79 kcal Atomic # 7 Polarization: -8.78 SS G_CDS: -3.90 Total: -12.67 kcal Atomic # 8 Polarization: -4.25 SS G_CDS: -3.95 Total: -8.20 kcal Atomic # 14 Polarization: 2.78 SS G_CDS: 2.24 Total: 5.02 kcal Atomic # 16 Polarization: 0.47 SS G_CDS: -1.10 Total: -0.63 kcal Total: -19.96 -1.88 -21.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12312126_15704122.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.953 kcal (2) G-P(sol) polarization free energy of solvation -19.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.842 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds