Wall clock time and date at job start Mon Mar 8 2021 06:56:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.33325 * 125.95342 * 2 1 4 4 C 1.50700 * 122.70906 * 359.96438 * 3 2 1 5 5 O 1.42895 * 109.47313 * 30.00074 * 4 3 2 6 6 Si 1.86303 * 109.46768 * 149.99941 * 4 3 2 7 7 N 1.32118 * 114.57599 * 179.78890 * 3 2 1 8 8 C 1.29692 * 116.87056 * 0.51818 * 7 3 2 9 9 N 1.38607 * 124.94918 * 179.71478 * 8 7 3 10 10 C 1.46498 * 119.99774 * 180.02562 * 9 8 7 11 11 H 1.09005 * 109.47310 * 35.00331 * 10 9 8 12 12 C 1.53003 * 109.47395 * 155.00078 * 10 9 8 13 13 C 1.52994 * 109.47256 * 180.02562 * 12 10 9 14 14 C 1.53005 * 109.47261 * 299.99789 * 13 12 10 15 15 H 1.09000 * 109.46732 * 300.00508 * 14 13 12 16 16 C 1.52994 * 109.47261 * 179.97438 * 14 13 12 17 17 N 1.46503 * 109.47195 * 175.00095 * 16 14 13 18 18 C 1.34779 * 119.99874 * 180.02562 * 17 16 14 19 19 O 1.21511 * 120.00109 * 359.97438 * 18 17 16 20 20 O 1.34635 * 119.99405 * 180.02562 * 18 17 16 21 21 C 1.45200 * 116.99521 * 179.97438 * 20 18 17 22 22 C 1.52995 * 109.47189 * 60.00291 * 21 20 18 23 23 C 1.53007 * 109.47160 * 180.02562 * 21 20 18 24 24 C 1.52999 * 109.47383 * 299.99661 * 21 20 18 25 25 C 1.52999 * 109.46493 * 60.00075 * 14 13 12 26 26 C 1.52996 * 109.47639 * 300.00060 * 25 14 13 27 27 S 1.70963 * 110.09751 * 359.71811 * 8 7 3 28 28 H 1.08995 * 109.47411 * 179.71451 * 1 2 3 29 29 H 1.08998 * 109.46596 * 299.71390 * 1 2 3 30 30 H 1.09004 * 109.46950 * 59.71210 * 1 2 3 31 31 H 1.09002 * 109.47018 * 269.99584 * 4 3 2 32 32 H 0.96696 * 114.00437 * 59.99850 * 5 4 3 33 33 H 1.48507 * 109.99871 * 179.97438 * 6 4 3 34 34 H 1.48495 * 109.99998 * 301.31451 * 6 4 3 35 35 H 0.96994 * 120.00378 * 0.02809 * 9 8 7 36 36 H 1.09005 * 109.46835 * 300.00488 * 12 10 9 37 37 H 1.09000 * 109.47008 * 59.99554 * 12 10 9 38 38 H 1.09005 * 109.47565 * 60.00181 * 13 12 10 39 39 H 1.09004 * 109.47092 * 179.97438 * 13 12 10 40 40 H 1.08998 * 109.47689 * 295.00310 * 16 14 13 41 41 H 1.08998 * 109.46965 * 55.00196 * 16 14 13 42 42 H 0.97001 * 119.99790 * 0.02562 * 17 16 14 43 43 H 1.09003 * 109.47594 * 59.99597 * 22 21 20 44 44 H 1.09005 * 109.47180 * 180.02562 * 22 21 20 45 45 H 1.09002 * 109.46903 * 299.99859 * 22 21 20 46 46 H 1.08996 * 109.47038 * 59.99806 * 23 21 20 47 47 H 1.08995 * 109.47203 * 180.02562 * 23 21 20 48 48 H 1.09003 * 109.46722 * 299.99851 * 23 21 20 49 49 H 1.09002 * 109.46701 * 60.00146 * 24 21 20 50 50 H 1.09007 * 109.46973 * 179.97438 * 24 21 20 51 51 H 1.08996 * 109.47206 * 300.00433 * 24 21 20 52 52 H 1.09000 * 109.47278 * 60.00767 * 25 14 13 53 53 H 1.09005 * 109.46516 * 179.97438 * 25 14 13 54 54 H 1.09000 * 109.46807 * 300.00134 * 26 25 14 55 55 H 1.08995 * 109.47484 * 180.02562 * 26 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2899 1.0793 0.0000 4 6 1.7415 2.4830 -0.0008 5 8 0.4811 2.5024 0.6722 6 14 2.9321 3.6151 0.8777 7 7 3.5851 0.8186 0.0044 8 6 3.9315 -0.4311 -0.0023 9 7 5.2385 -0.8928 -0.0048 10 6 5.5065 -2.3330 -0.0131 11 1 4.7455 -2.8408 -0.6057 12 6 6.8852 -2.5917 -0.6241 13 6 7.1649 -4.0958 -0.6333 14 6 7.1342 -4.6292 0.8004 15 1 7.8953 -4.1216 1.3931 16 6 7.4133 -6.1334 0.7911 17 7 7.5023 -6.6221 2.1694 18 6 7.7444 -7.9264 2.4075 19 8 7.8885 -8.6970 1.4791 20 8 7.8257 -8.3755 3.6742 21 6 8.0882 -9.7920 3.8556 22 6 9.4263 -10.1501 3.2059 23 6 8.1447 -10.1129 5.3506 24 6 6.9698 -10.6059 3.2018 25 6 5.7556 -4.3704 1.4113 26 6 5.4758 -2.8663 1.4205 27 16 2.5413 -1.4261 -0.0077 28 1 -0.3634 -1.0276 -0.0051 29 1 -0.3632 0.5094 0.8926 30 1 -0.3633 0.5183 -0.8874 31 1 1.6099 2.8210 -1.0287 32 1 0.5228 2.2129 1.5939 33 1 2.4031 5.0028 0.8832 34 1 3.1446 3.1465 2.2706 35 1 5.9756 -0.2623 -0.0010 36 1 6.9069 -2.2121 -1.6457 37 1 7.6463 -2.0839 -0.0316 38 1 6.4038 -4.6034 -1.2261 39 1 8.1469 -4.2802 -1.0690 40 1 6.6046 -6.6499 0.2740 41 1 8.3546 -6.3251 0.2761 42 1 7.3869 -6.0070 2.9104 43 1 10.2232 -9.5702 3.6716 44 1 9.6232 -11.2135 3.3417 45 1 9.3856 -9.9216 2.1408 46 1 7.1912 -9.8579 5.8132 47 1 8.3422 -11.1761 5.4868 48 1 8.9413 -9.5330 5.8168 49 1 6.9291 -10.3775 2.1368 50 1 7.1672 -11.6693 3.3377 51 1 6.0165 -10.3509 3.6648 52 1 4.9945 -4.8780 0.8186 53 1 5.7336 -4.7508 2.4326 54 1 6.2369 -2.3589 2.0133 55 1 4.4938 -2.6820 1.8561 There are 70 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 70 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_12429298_15704122.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 06:56:14 Heat of formation + Delta-G solvation = -76.878620 kcal Electronic energy + Delta-G solvation = -33504.572732 eV Core-core repulsion = 29055.439113 eV Total energy + Delta-G solvation = -4449.133619 eV No. of doubly occupied orbitals = 70 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 384.192 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -41.83268 -41.12135 -40.29793 -38.55659 -37.91383 -36.74295 -35.43784 -34.68002 -32.89036 -31.81434 -31.07751 -29.17158 -28.38060 -28.31575 -26.64638 -25.56560 -24.44506 -23.88863 -23.08659 -22.28199 -21.40322 -20.96928 -20.31432 -19.19609 -19.12563 -18.02465 -17.67450 -17.36609 -17.26247 -16.80447 -16.61387 -16.27941 -15.90483 -15.78088 -15.69972 -15.48955 -15.25313 -15.08754 -14.84909 -14.45425 -14.27550 -14.11231 -13.99816 -13.85502 -13.56194 -13.52543 -13.35662 -13.30073 -13.17467 -13.09716 -12.92521 -12.87929 -12.79611 -12.51126 -12.47977 -12.34015 -12.17727 -12.10228 -11.97119 -11.72906 -11.53314 -11.40619 -11.26900 -11.13119 -10.86418 -10.65212 -10.54553 -10.21002 -10.03415 -8.61310 -4.79504 -0.02119 0.16226 0.73841 1.17996 1.29013 1.66360 1.75495 1.82413 1.93763 1.99605 3.15848 3.27918 3.47995 3.58133 3.66517 3.70452 3.73167 3.78299 3.93235 3.94280 4.13956 4.17212 4.21652 4.31772 4.40339 4.42708 4.49678 4.51724 4.54360 4.59834 4.61080 4.65062 4.75075 4.76218 4.78948 4.82181 4.83999 4.86295 4.88306 4.91311 5.00754 5.06194 5.10126 5.11154 5.18119 5.21077 5.23488 5.25702 5.28170 5.32905 5.36435 5.47840 5.58809 5.69783 6.31537 6.38551 6.44403 6.93254 7.33479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C -0.260 4.260 3 C 0.056 3.944 4 C -0.041 4.041 5 O -0.533 6.533 6 Si 0.783 3.217 7 N -0.559 5.559 8 C 0.314 3.686 9 N -0.682 5.682 10 C 0.151 3.849 11 H 0.078 0.922 12 C -0.115 4.115 13 C -0.106 4.106 14 C -0.089 4.089 15 H 0.093 0.907 16 C 0.142 3.858 17 N -0.699 5.699 18 C 0.641 3.359 19 O -0.596 6.596 20 O -0.371 6.371 21 C 0.127 3.873 22 C -0.180 4.180 23 C -0.138 4.138 24 C -0.180 4.180 25 C -0.110 4.110 26 C -0.131 4.131 27 S 0.113 5.887 28 H 0.064 0.936 29 H 0.085 0.915 30 H 0.071 0.929 31 H 0.131 0.869 32 H 0.384 0.616 33 H -0.292 1.292 34 H -0.305 1.305 35 H 0.417 0.583 36 H 0.078 0.922 37 H 0.084 0.916 38 H 0.072 0.928 39 H 0.083 0.917 40 H 0.064 0.936 41 H 0.067 0.933 42 H 0.416 0.584 43 H 0.062 0.938 44 H 0.086 0.914 45 H 0.063 0.937 46 H 0.069 0.931 47 H 0.098 0.902 48 H 0.069 0.931 49 H 0.063 0.937 50 H 0.086 0.914 51 H 0.061 0.939 52 H 0.067 0.933 53 H 0.072 0.928 54 H 0.076 0.924 55 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.879 -1.868 1.104 3.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.383 4.383 3 C -0.074 4.074 4 C -0.154 4.154 5 O -0.340 6.340 6 Si 0.689 3.311 7 N -0.287 5.287 8 C -0.057 4.057 9 N -0.322 5.322 10 C 0.046 3.954 11 H 0.096 0.904 12 C -0.154 4.154 13 C -0.144 4.144 14 C -0.108 4.108 15 H 0.112 0.888 16 C 0.020 3.980 17 N -0.360 5.360 18 C 0.394 3.606 19 O -0.487 6.487 20 O -0.285 6.285 21 C 0.091 3.909 22 C -0.237 4.237 23 C -0.195 4.195 24 C -0.237 4.237 25 C -0.148 4.148 26 C -0.170 4.170 27 S 0.362 5.638 28 H 0.083 0.917 29 H 0.103 0.897 30 H 0.090 0.910 31 H 0.148 0.852 32 H 0.234 0.766 33 H -0.220 1.220 34 H -0.233 1.233 35 H 0.257 0.743 36 H 0.097 0.903 37 H 0.103 0.897 38 H 0.090 0.910 39 H 0.102 0.898 40 H 0.083 0.917 41 H 0.086 0.914 42 H 0.253 0.747 43 H 0.081 0.919 44 H 0.105 0.895 45 H 0.082 0.918 46 H 0.088 0.912 47 H 0.116 0.884 48 H 0.088 0.912 49 H 0.082 0.918 50 H 0.105 0.895 51 H 0.080 0.920 52 H 0.086 0.914 53 H 0.090 0.910 54 H 0.095 0.905 55 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 3.171 -2.450 0.767 4.079 hybrid contribution -0.902 0.699 0.926 1.470 sum 2.268 -1.751 1.693 3.328 Atomic orbital electron populations 1.20138 0.85791 1.02040 1.03637 1.25366 1.02047 0.93330 1.17582 1.20208 0.87107 0.97531 1.02548 1.24497 0.91702 0.95102 1.04090 1.86595 1.28639 1.89090 1.29660 0.92877 0.85320 0.73786 0.79138 1.65740 1.17148 1.17167 1.28630 1.23529 0.92862 0.91307 0.98024 1.44204 1.00989 1.07777 1.79229 1.21301 0.99277 0.77788 0.97028 0.90435 1.21700 0.94470 0.97132 1.02051 1.21438 1.03589 0.94267 0.95126 1.21392 0.98378 0.92594 0.98412 0.88830 1.21463 1.02132 0.94506 0.79912 1.44767 1.74906 1.05536 1.10749 1.18385 0.76384 0.84063 0.81748 1.90910 1.56631 1.56058 1.45089 1.86307 1.84580 1.30301 1.27325 1.22340 0.95688 0.74849 0.98040 1.22470 0.95638 1.03421 1.02165 1.21891 1.03641 1.03490 0.90464 1.22473 0.97848 1.01236 1.02150 1.21564 0.96596 0.94907 1.01783 1.21995 1.02409 0.96370 0.96258 1.83883 0.96042 1.09866 1.73992 0.91726 0.89698 0.91005 0.85151 0.76621 1.21982 1.23279 0.74341 0.90319 0.89730 0.90975 0.89797 0.91731 0.91427 0.74732 0.91926 0.89526 0.91767 0.91210 0.88367 0.91185 0.91771 0.89527 0.91964 0.91447 0.90955 0.90497 0.92493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.04 8.90 71.24 0.63 0.59 16 2 C -0.26 -0.98 6.50 24.58 0.16 -0.82 16 3 C 0.06 0.28 5.92 41.40 0.25 0.52 16 4 C -0.04 -0.12 2.94 71.24 0.21 0.09 16 5 O -0.53 -1.42 10.18 -148.98 -1.52 -2.94 16 6 Si 0.78 2.64 32.08 68.60 2.20 4.85 16 7 N -0.56 -2.89 8.94 -189.86 -1.70 -4.58 16 8 C 0.31 0.69 8.22 179.32 1.47 2.16 16 9 N -0.68 2.30 5.23 -330.40 -1.73 0.57 16 10 C 0.15 -1.03 2.40 44.99 0.11 -0.92 16 11 H 0.08 -0.42 7.26 -2.38 -0.02 -0.44 16 12 C -0.12 1.14 5.39 30.59 0.16 1.31 16 13 C -0.11 1.05 5.20 30.59 0.16 1.21 16 14 C -0.09 0.83 2.23 -10.79 -0.02 0.81 16 15 H 0.09 -0.99 8.14 -2.39 -0.02 -1.01 16 16 C 0.14 -0.60 5.06 86.38 0.44 -0.16 16 17 N -0.70 1.15 5.29 -590.86 -3.12 -1.97 16 18 C 0.64 3.57 8.06 129.79 1.05 4.62 16 19 O -0.60 -6.68 11.88 19.80 0.24 -6.44 16 20 O -0.37 -1.75 9.94 -55.44 -0.55 -2.30 16 21 C 0.13 0.31 1.13 -10.79 -0.01 0.30 16 22 C -0.18 -0.50 8.37 71.98 0.60 0.11 16 23 C -0.14 0.34 8.85 71.98 0.64 0.98 16 24 C -0.18 -0.51 8.37 71.98 0.60 0.09 16 25 C -0.11 0.92 5.08 30.59 0.16 1.07 16 26 C -0.13 0.92 5.51 30.59 0.17 1.09 16 27 S 0.11 0.16 21.69 -56.49 -1.22 -1.07 16 28 H 0.06 -0.05 8.14 -2.39 -0.02 -0.07 16 29 H 0.08 -0.06 6.41 -2.39 -0.02 -0.08 16 30 H 0.07 0.12 8.14 -2.39 -0.02 0.10 16 31 H 0.13 0.16 7.96 -2.39 -0.02 0.14 16 32 H 0.38 -0.76 8.13 -74.06 -0.60 -1.36 16 33 H -0.29 -2.44 7.11 99.48 0.71 -1.73 16 34 H -0.31 -2.92 7.11 99.48 0.71 -2.22 16 35 H 0.42 -2.20 8.73 -92.71 -0.81 -3.01 16 36 H 0.08 -0.73 8.14 -2.38 -0.02 -0.75 16 37 H 0.08 -0.94 8.14 -2.39 -0.02 -0.96 16 38 H 0.07 -0.67 8.14 -2.38 -0.02 -0.69 16 39 H 0.08 -0.87 8.14 -2.39 -0.02 -0.89 16 40 H 0.06 -0.13 8.14 -2.39 -0.02 -0.15 16 41 H 0.07 -0.17 8.14 -2.39 -0.02 -0.19 16 42 H 0.42 -2.46 7.76 -92.71 -0.72 -3.18 16 43 H 0.06 0.13 8.14 -2.39 -0.02 0.11 16 44 H 0.09 -0.05 8.14 -2.38 -0.02 -0.07 16 45 H 0.06 0.51 5.88 -2.39 -0.01 0.50 16 46 H 0.07 -0.18 8.14 -2.39 -0.02 -0.20 16 47 H 0.10 -0.55 8.14 -2.39 -0.02 -0.57 16 48 H 0.07 -0.19 8.14 -2.39 -0.02 -0.21 16 49 H 0.06 0.52 5.88 -2.39 -0.01 0.50 16 50 H 0.09 -0.04 8.14 -2.38 -0.02 -0.06 16 51 H 0.06 0.13 8.14 -2.39 -0.02 0.11 16 52 H 0.07 -0.48 8.14 -2.39 -0.02 -0.49 16 53 H 0.07 -0.60 7.18 -2.38 -0.02 -0.62 16 54 H 0.08 -0.57 8.14 -2.39 -0.02 -0.59 16 55 H 0.06 -0.22 8.04 -2.39 -0.02 -0.24 16 Total: 0.00 -17.33 437.35 -1.82 -19.15 By element: Atomic # 1 Polarization: -17.13 SS G_CDS: -1.18 Total: -18.31 kcal Atomic # 6 Polarization: 6.28 SS G_CDS: 6.77 Total: 13.04 kcal Atomic # 7 Polarization: 0.57 SS G_CDS: -6.55 Total: -5.98 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: -1.83 Total: -11.68 kcal Atomic # 14 Polarization: 2.64 SS G_CDS: 2.20 Total: 4.85 kcal Atomic # 16 Polarization: 0.16 SS G_CDS: -1.22 Total: -1.07 kcal Total: -17.33 -1.82 -19.15 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12429298_15704122.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.724 kcal (2) G-P(sol) polarization free energy of solvation -17.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds