Wall clock time and date at job start Mon Mar 8 2021 03:46:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42905 * 1 3 3 Si 1.86292 * 109.46905 * 2 1 4 4 C 1.50698 * 109.47320 * 239.99581 * 2 1 3 5 5 C 1.33329 * 125.95316 * 299.98260 * 4 2 1 6 6 N 1.32123 * 114.57848 * 179.75434 * 5 4 2 7 7 C 1.29686 * 116.86438 * 0.46714 * 6 5 4 8 8 N 1.38607 * 124.94891 * 179.81886 * 7 6 5 9 9 C 1.46500 * 120.00141 * 359.69363 * 8 7 6 10 10 H 1.08998 * 109.46845 * 325.00724 * 9 8 7 11 11 C 1.53006 * 109.47249 * 84.99877 * 9 8 7 12 12 C 1.52997 * 109.47164 * 180.02562 * 11 9 8 13 13 C 1.53002 * 109.46978 * 299.99874 * 12 11 9 14 14 H 1.08992 * 109.47056 * 300.00064 * 13 12 11 15 15 O 1.42903 * 109.46797 * 180.02562 * 13 12 11 16 16 C 1.35700 * 117.00052 * 90.00273 * 15 13 12 17 17 N 1.32221 * 119.69175 * 359.72809 * 16 15 13 18 18 C 1.31974 * 121.66413 * 179.70878 * 17 16 15 19 19 C 1.38030 * 120.85411 * 0.56542 * 18 17 16 20 20 C 1.38831 * 119.30465 * 359.72451 * 19 18 17 21 21 C 1.38468 * 118.47237 * 359.97438 * 20 19 18 22 22 Cl 1.73600 * 120.45792 * 180.02562 * 21 20 19 23 23 C 1.52996 * 109.46891 * 60.00410 * 13 12 11 24 24 C 1.52997 * 109.47473 * 205.00175 * 9 8 7 25 25 S 1.70962 * 110.10330 * 359.55024 * 7 6 5 26 26 H 0.96703 * 113.99270 * 60.00450 * 1 2 3 27 27 H 1.09004 * 109.46614 * 119.99954 * 2 1 3 28 28 H 1.48501 * 110.00395 * 59.99677 * 3 2 1 29 29 H 1.48504 * 109.99994 * 181.31754 * 3 2 1 30 30 H 1.07997 * 122.70678 * 359.97438 * 5 4 2 31 31 H 0.97005 * 120.00485 * 179.69328 * 8 7 6 32 32 H 1.09001 * 109.47002 * 60.00085 * 11 9 8 33 33 H 1.09000 * 109.47050 * 300.00351 * 11 9 8 34 34 H 1.09002 * 109.47045 * 180.02562 * 12 11 9 35 35 H 1.09001 * 109.47375 * 59.99966 * 12 11 9 36 36 H 1.07999 * 119.57261 * 180.28530 * 18 17 16 37 37 H 1.08003 * 120.34929 * 179.69957 * 19 18 17 38 38 H 1.08000 * 120.76906 * 180.02562 * 20 19 18 39 39 H 1.09004 * 109.47368 * 179.97438 * 23 13 12 40 40 H 1.09001 * 109.47372 * 59.99964 * 23 13 12 41 41 H 1.09002 * 109.47153 * 59.99757 * 24 9 8 42 42 H 1.09001 * 109.46832 * 299.99948 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7105 -1.2304 5 6 1.6839 -1.9790 -1.5577 6 7 2.2342 -2.3710 -2.6931 7 6 2.9427 -1.4943 -3.3344 8 7 3.5955 -1.7255 -4.5350 9 6 3.5181 -3.0440 -5.1689 10 1 3.4968 -3.8161 -4.3998 11 6 2.2449 -3.1301 -6.0132 12 6 2.1638 -4.5073 -6.6746 13 6 3.3857 -4.7150 -7.5717 14 1 3.4070 -3.9432 -8.3410 15 8 3.3096 -6.0011 -8.1900 16 6 2.6754 -6.0724 -9.3875 17 7 2.1597 -4.9784 -9.9217 18 6 1.5400 -5.0020 -11.0867 19 6 1.3972 -6.1819 -11.7887 20 6 1.9193 -7.3546 -11.2600 21 6 2.5694 -7.2961 -10.0388 22 17 3.2424 -8.7311 -9.3306 23 6 4.6587 -4.6290 -6.7274 24 6 4.7400 -3.2512 -6.0660 25 16 2.9480 -0.0095 -2.4869 26 1 -0.3932 0.4417 -0.7651 27 1 1.7923 -0.5139 0.8900 28 1 1.5614 2.4679 1.2084 29 1 3.5346 1.7703 -0.0321 30 1 1.0792 -2.6322 -0.9461 31 1 4.1036 -1.0143 -4.9557 32 1 2.2661 -2.3579 -6.7822 33 1 1.3744 -2.9825 -5.3740 34 1 1.2570 -4.5685 -7.2765 35 1 2.1424 -5.2792 -5.9053 36 1 1.1354 -4.0872 -11.4939 37 1 0.8842 -6.1927 -12.7391 38 1 1.8214 -8.2909 -11.7894 39 1 5.5293 -4.7774 -7.3664 40 1 4.6374 -5.4009 -5.9581 41 1 5.6469 -3.1899 -5.4645 42 1 4.7611 -2.4790 -6.8351 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_12496378_15704118.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 03:46:28 Heat of formation + Delta-G solvation = 16.904445 kcal Electronic energy + Delta-G solvation = -27653.545829 eV Core-core repulsion = 23560.371022 eV Total energy + Delta-G solvation = -4093.174807 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 368.075 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.87268 -40.90627 -40.04458 -38.55670 -37.72926 -37.60895 -35.50531 -33.41431 -31.96101 -31.85270 -31.19069 -29.60852 -26.59355 -25.28605 -24.58781 -24.34060 -23.76664 -22.95214 -21.30659 -20.68000 -19.76545 -19.47013 -18.23549 -18.17684 -17.38423 -17.13281 -16.83338 -16.62981 -16.34579 -15.99620 -15.90261 -15.72552 -15.44967 -15.17710 -14.93367 -14.76110 -14.42894 -14.24914 -14.04645 -13.97560 -13.39093 -13.33617 -13.15993 -13.01059 -12.91478 -12.70999 -12.45253 -12.28013 -12.21651 -12.10472 -12.01328 -11.68982 -11.34577 -11.04956 -10.80234 -10.75164 -10.72770 -10.27448 -10.15954 -9.47622 -8.74513 -5.11134 -0.11075 -0.05778 0.02083 0.12225 0.66500 1.03999 1.26741 1.57690 1.80721 1.88414 1.97881 2.19075 2.59011 3.21978 3.49764 3.54055 3.57526 3.63548 3.71139 3.89788 3.92163 3.95412 4.03440 4.05598 4.15037 4.25156 4.31007 4.37784 4.39413 4.48028 4.59729 4.71021 4.74458 4.80311 4.87301 4.98229 5.00911 5.03127 5.04187 5.06299 5.19337 5.27474 5.39026 5.82630 6.12069 6.17656 6.66476 6.72102 7.02390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.551 6.551 2 C -0.014 4.014 3 Si 0.731 3.269 4 C -0.309 4.309 5 C 0.103 3.897 6 N -0.578 5.578 7 C 0.317 3.683 8 N -0.680 5.680 9 C 0.163 3.837 10 H 0.073 0.927 11 C -0.111 4.111 12 C -0.122 4.122 13 C 0.092 3.908 14 H 0.092 0.908 15 O -0.305 6.305 16 C 0.317 3.683 17 N -0.541 5.541 18 C 0.137 3.863 19 C -0.191 4.191 20 C -0.035 4.035 21 C -0.134 4.134 22 Cl -0.056 7.056 23 C -0.109 4.109 24 C -0.112 4.112 25 S 0.117 5.883 26 H 0.395 0.605 27 H 0.117 0.883 28 H -0.272 1.272 29 H -0.267 1.267 30 H 0.175 0.825 31 H 0.426 0.574 32 H 0.077 0.923 33 H 0.056 0.944 34 H 0.059 0.941 35 H 0.060 0.940 36 H 0.196 0.804 37 H 0.180 0.820 38 H 0.170 0.830 39 H 0.083 0.917 40 H 0.070 0.930 41 H 0.090 0.910 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.056 4.355 -6.869 8.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.358 6.358 2 C -0.128 4.128 3 Si 0.635 3.365 4 C -0.432 4.432 5 C -0.048 4.048 6 N -0.304 5.304 7 C -0.053 4.053 8 N -0.319 5.319 9 C 0.056 3.944 10 H 0.091 0.909 11 C -0.151 4.151 12 C -0.160 4.160 13 C 0.036 3.964 14 H 0.110 0.890 15 O -0.212 6.212 16 C 0.137 3.863 17 N -0.265 5.265 18 C -0.018 4.018 19 C -0.210 4.210 20 C -0.061 4.061 21 C -0.163 4.163 22 Cl -0.027 7.027 23 C -0.147 4.147 24 C -0.150 4.150 25 S 0.366 5.634 26 H 0.245 0.755 27 H 0.134 0.866 28 H -0.198 1.198 29 H -0.193 1.193 30 H 0.192 0.808 31 H 0.265 0.735 32 H 0.095 0.905 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.212 0.788 37 H 0.197 0.803 38 H 0.188 0.812 39 H 0.102 0.898 40 H 0.089 0.911 41 H 0.108 0.892 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 1.300 5.393 -5.665 7.929 hybrid contribution -0.464 -2.015 0.381 2.103 sum 0.837 3.378 -5.285 6.328 Atomic orbital electron populations 1.86479 1.16990 1.82131 1.50250 1.24242 0.84886 1.09411 0.94260 0.94099 0.79157 0.75857 0.87406 1.25698 1.13209 0.99128 1.05196 1.21410 0.97739 0.93685 0.91923 1.66486 1.18034 1.34788 1.11104 1.23943 0.94830 0.93888 0.92667 1.44133 1.54151 1.14981 1.18684 1.20987 0.95095 0.83823 0.94446 0.90921 1.21738 0.98098 0.96349 0.98885 1.21784 0.97687 0.97884 0.98671 1.22535 0.96141 0.83071 0.94659 0.88990 1.86350 1.70416 1.34929 1.29506 1.19695 0.90915 0.88988 0.86675 1.67488 1.15120 1.28179 1.15739 1.23201 0.91001 1.00140 0.87469 1.22423 1.03229 0.91641 1.03755 1.21818 0.91506 1.01634 0.91121 1.21177 1.09056 0.87506 0.98607 1.98383 1.84156 1.36289 1.83896 1.21531 0.96052 0.98016 0.99112 1.21706 0.97416 0.96878 0.99036 1.83786 1.51004 1.12466 1.16095 0.75522 0.86558 1.19766 1.19341 0.80822 0.73473 0.90474 0.92479 0.92267 0.92093 0.78758 0.80301 0.81216 0.89828 0.91093 0.89160 0.89134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -0.46 12.87 -148.98 -1.92 -2.38 16 2 C -0.01 -0.01 2.99 71.24 0.21 0.21 16 3 Si 0.73 -0.86 31.05 68.60 2.13 1.27 16 4 C -0.31 -0.62 5.74 24.57 0.14 -0.48 16 5 C 0.10 0.53 11.22 83.54 0.94 1.47 16 6 N -0.58 -3.98 9.91 -202.03 -2.00 -5.98 16 7 C 0.32 0.79 8.06 179.32 1.45 2.23 16 8 N -0.68 1.56 5.23 -330.40 -1.73 -0.17 16 9 C 0.16 -0.23 2.58 44.99 0.12 -0.11 16 10 H 0.07 0.25 7.77 -2.39 -0.02 0.23 16 11 C -0.11 -0.01 5.51 30.60 0.17 0.15 16 12 C -0.12 -0.29 5.54 30.59 0.17 -0.12 16 13 C 0.09 0.16 2.38 30.59 0.07 0.23 16 14 H 0.09 0.15 6.99 -2.39 -0.02 0.14 16 15 O -0.30 -1.99 9.24 -90.20 -0.83 -2.82 16 16 C 0.32 1.85 7.45 84.82 0.63 2.48 16 17 N -0.54 -1.75 8.65 -308.87 -2.67 -4.42 16 18 C 0.14 -0.38 11.17 84.62 0.95 0.57 16 19 C -0.19 0.95 10.10 22.36 0.23 1.17 16 20 C -0.03 0.05 9.97 22.47 0.22 0.28 16 21 C -0.13 -0.57 6.36 22.51 0.14 -0.43 16 22 Cl -0.06 -0.32 28.54 -2.72 -0.08 -0.39 16 23 C -0.11 0.18 5.58 30.61 0.17 0.35 16 24 C -0.11 0.59 5.39 30.61 0.17 0.76 16 25 S 0.12 -0.05 20.57 -56.49 -1.16 -1.21 16 26 H 0.39 -2.64 8.70 -74.06 -0.64 -3.29 16 27 H 0.12 0.11 7.96 -2.39 -0.02 0.09 16 28 H -0.27 -1.31 7.11 99.48 0.71 -0.60 16 29 H -0.27 -0.86 7.11 99.48 0.71 -0.16 16 30 H 0.17 0.68 8.06 -2.91 -0.02 0.65 16 31 H 0.43 -3.21 8.73 -92.70 -0.81 -4.02 16 32 H 0.08 -0.13 8.14 -2.39 -0.02 -0.15 16 33 H 0.06 0.25 8.14 -2.39 -0.02 0.23 16 34 H 0.06 0.29 8.14 -2.39 -0.02 0.27 16 35 H 0.06 0.29 8.14 -2.39 -0.02 0.27 16 36 H 0.20 -1.82 8.06 -2.91 -0.02 -1.85 16 37 H 0.18 -2.08 8.06 -2.91 -0.02 -2.10 16 38 H 0.17 -1.02 8.06 -2.91 -0.02 -1.05 16 39 H 0.08 -0.19 8.14 -2.39 -0.02 -0.21 16 40 H 0.07 0.01 8.14 -2.39 -0.02 -0.01 16 41 H 0.09 -0.58 8.14 -2.39 -0.02 -0.60 16 42 H 0.09 -0.73 8.14 -2.39 -0.02 -0.75 16 Total: 0.00 -17.39 377.83 -2.83 -20.22 By element: Atomic # 1 Polarization: -12.53 SS G_CDS: -0.34 Total: -12.88 kcal Atomic # 6 Polarization: 2.99 SS G_CDS: 5.77 Total: 8.76 kcal Atomic # 7 Polarization: -4.17 SS G_CDS: -6.40 Total: -10.57 kcal Atomic # 8 Polarization: -2.45 SS G_CDS: -2.75 Total: -5.20 kcal Atomic # 14 Polarization: -0.86 SS G_CDS: 2.13 Total: 1.27 kcal Atomic # 16 Polarization: -0.05 SS G_CDS: -1.16 Total: -1.21 kcal Atomic # 17 Polarization: -0.32 SS G_CDS: -0.08 Total: -0.39 kcal Total: -17.39 -2.83 -20.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12496378_15704118.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.125 kcal (2) G-P(sol) polarization free energy of solvation -17.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.221 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds