Wall clock time and date at job start Mon Mar 8 2021 04:10:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 C 1.81399 * 102.99961 * 2 1 4 4 H 1.09000 * 112.90672 * 43.74632 * 3 2 1 5 5 C 1.53784 * 113.61571 * 175.00012 * 3 2 1 6 6 C 1.53787 * 87.07923 * 139.98070 * 5 3 2 7 7 H 1.08997 * 113.61087 * 219.93398 * 6 5 3 8 8 N 1.46503 * 113.61181 * 89.11654 * 6 5 3 9 9 C 1.38407 * 119.99527 * 154.99607 * 8 6 5 10 10 N 1.32486 * 119.22076 * 359.73084 * 9 8 6 11 11 C 1.32282 * 120.74252 * 179.71080 * 10 9 8 12 12 C 1.38605 * 119.19335 * 0.55298 * 11 10 9 13 13 C 1.50697 * 120.72297 * 179.70190 * 12 11 10 14 14 O 1.42896 * 109.47448 * 245.02371 * 13 12 11 15 15 Si 1.86308 * 109.46744 * 5.02480 * 13 12 11 16 16 C 1.38609 * 118.55785 * 359.72431 * 12 11 10 17 17 N 1.32269 * 119.19957 * 0.02562 * 16 12 11 18 18 C 1.53778 * 87.08035 * 334.56830 * 6 5 3 19 19 H 1.09006 * 109.46656 * 179.97438 * 1 2 3 20 20 H 1.08993 * 109.47409 * 299.99483 * 1 2 3 21 21 H 1.08996 * 109.47246 * 60.00134 * 1 2 3 22 22 H 1.09004 * 113.61451 * 25.43556 * 5 3 2 23 23 H 1.08994 * 113.61477 * 254.52857 * 5 3 2 24 24 H 0.96997 * 119.99779 * 335.00324 * 8 6 5 25 25 H 1.07992 * 120.40636 * 180.30000 * 11 10 9 26 26 H 1.08999 * 109.47509 * 125.02002 * 13 12 11 27 27 H 0.96702 * 114.00268 * 59.99664 * 14 13 12 28 28 H 1.48501 * 109.99895 * 179.97438 * 15 13 12 29 29 H 1.48499 * 109.99912 * 301.31477 * 15 13 12 30 30 H 1.08004 * 120.39881 * 180.02562 * 16 12 11 31 31 H 1.08999 * 113.61111 * 139.98327 * 18 6 5 32 32 H 1.08999 * 113.61280 * 270.79710 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 1 1.6107 2.3440 0.6943 5 6 3.7283 2.0520 0.1228 6 6 3.5205 3.1738 -0.9084 7 1 4.3243 3.2480 -1.6408 8 7 3.1760 4.4655 -0.3090 9 6 3.4567 5.6394 -0.9862 10 7 4.0420 5.5773 -2.1731 11 6 4.3188 6.6802 -2.8491 12 6 3.9994 7.9103 -2.2960 13 6 4.3054 9.1886 -3.0330 14 8 5.2785 9.9382 -2.3029 15 14 4.9734 8.7853 -4.7248 16 6 3.3929 7.9391 -1.0500 17 7 3.1389 6.7990 -0.4294 18 6 2.3007 2.3815 -1.4077 19 1 -0.3633 -1.0278 -0.0005 20 1 -0.3634 0.5137 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 4.3572 1.2382 -0.2382 23 1 4.0255 2.4134 1.1072 24 1 2.7514 4.4978 0.5625 25 1 4.7916 6.6230 -3.8183 26 1 3.3936 9.7774 -3.1334 27 1 6.1175 9.4746 -2.1753 28 1 5.2786 10.0376 -5.4622 29 1 6.1991 7.9559 -4.6024 30 1 3.1308 8.8812 -0.5914 31 1 1.4456 3.0090 -1.6588 32 1 2.5391 1.6589 -2.1880 There are 43 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 43 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_12525168_12175864.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:10:06 Heat of formation + Delta-G solvation = 61.621922 kcal Electronic energy + Delta-G solvation = -16252.010172 eV Core-core repulsion = 13535.010103 eV Total energy + Delta-G solvation = -2717.000068 eV No. of doubly occupied orbitals = 43 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 254.083 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.15707 -40.27700 -38.15510 -35.42613 -34.71341 -32.06436 -29.93778 -27.20060 -26.89175 -26.17752 -25.37517 -23.29248 -20.81389 -19.70538 -18.67654 -18.12051 -17.58033 -16.68882 -16.62302 -16.15710 -15.97471 -15.74508 -15.37769 -15.25671 -14.63473 -14.57866 -14.14028 -14.01706 -13.91710 -13.65073 -13.20624 -12.55435 -12.26616 -12.08781 -11.88318 -11.76784 -11.67618 -11.28008 -10.87339 -10.73951 -10.05013 -9.20178 -8.65506 -5.05001 0.02255 0.13079 0.70641 1.19167 1.49461 1.53339 1.71077 1.89207 2.76442 3.07200 3.26655 3.28924 3.31612 3.56194 3.63619 3.67916 3.70136 3.85628 4.15116 4.16242 4.18824 4.41239 4.51097 4.59055 4.63454 4.64537 4.74033 4.77508 4.83296 4.94081 5.25807 5.74225 5.96035 6.31716 6.34068 7.24840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 S -0.251 6.251 3 C -0.086 4.086 4 H 0.103 0.897 5 C -0.118 4.118 6 C 0.140 3.860 7 H 0.117 0.883 8 N -0.679 5.679 9 C 0.570 3.430 10 N -0.560 5.560 11 C 0.198 3.802 12 C -0.291 4.291 13 C -0.053 4.053 14 O -0.530 6.530 15 Si 0.679 3.321 16 C 0.224 3.776 17 N -0.569 5.569 18 C -0.138 4.138 19 H 0.101 0.899 20 H 0.076 0.924 21 H 0.077 0.923 22 H 0.108 0.892 23 H 0.084 0.916 24 H 0.414 0.586 25 H 0.168 0.832 26 H 0.120 0.880 27 H 0.376 0.624 28 H -0.253 1.253 29 H -0.257 1.257 30 H 0.171 0.829 31 H 0.075 0.925 32 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.533 -0.449 -1.665 2.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.291 4.291 2 S -0.023 6.023 3 C -0.214 4.214 4 H 0.121 0.879 5 C -0.157 4.157 6 C 0.032 3.968 7 H 0.135 0.865 8 N -0.315 5.315 9 C 0.214 3.786 10 N -0.282 5.282 11 C 0.030 3.970 12 C -0.299 4.299 13 C -0.165 4.165 14 O -0.336 6.336 15 Si 0.580 3.420 16 C 0.056 3.944 17 N -0.290 5.290 18 C -0.180 4.180 19 H 0.120 0.880 20 H 0.095 0.905 21 H 0.096 0.904 22 H 0.126 0.874 23 H 0.103 0.897 24 H 0.252 0.748 25 H 0.184 0.816 26 H 0.138 0.862 27 H 0.224 0.776 28 H -0.177 1.177 29 H -0.182 1.182 30 H 0.188 0.812 31 H 0.093 0.907 32 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -0.837 -1.907 -1.757 2.725 hybrid contribution -0.186 1.885 0.908 2.101 sum -1.024 -0.021 -0.849 1.330 Atomic orbital electron populations 1.23373 0.94075 1.06642 1.04980 1.86931 1.07631 1.10096 1.97632 1.24808 1.00783 0.94513 1.01344 0.87877 1.23217 0.93696 0.98144 1.00684 1.21794 0.98266 0.80621 0.96108 0.86549 1.43813 1.65066 1.01077 1.21508 1.19331 0.87011 0.86239 0.86051 1.67923 1.19321 1.32541 1.08382 1.22862 0.90077 0.86606 0.97431 1.21663 1.10314 0.97473 1.00446 1.24674 0.96261 0.91696 1.03828 1.86616 1.26629 1.44786 1.75540 0.95177 0.86036 0.82918 0.77845 1.22852 0.86706 0.95570 0.89313 1.67979 1.25839 0.97862 1.37359 1.23810 0.99314 0.99258 0.95598 0.88022 0.90515 0.90386 0.87406 0.89740 0.74775 0.81582 0.86201 0.77642 1.17729 1.18202 0.81216 0.90668 0.87551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.13 10.76 101.05 1.09 1.22 16 2 S -0.25 -0.18 22.18 -107.50 -2.38 -2.57 16 3 C -0.09 0.10 4.15 -25.92 -0.11 -0.01 16 4 H 0.10 -0.16 8.14 -51.93 -0.42 -0.58 16 5 C -0.12 0.20 7.42 -25.91 -0.19 0.01 16 6 C 0.14 -0.15 4.34 -67.12 -0.29 -0.44 16 7 H 0.12 -0.03 7.36 -51.93 -0.38 -0.41 16 8 N -0.68 0.02 5.41 -55.00 -0.30 -0.27 16 9 C 0.57 1.14 8.42 -322.81 -2.72 -1.58 16 10 N -0.56 -0.98 9.13 -13.93 -0.13 -1.11 16 11 C 0.20 -0.02 9.92 -17.22 -0.17 -0.19 16 12 C -0.29 0.15 5.36 -104.35 -0.56 -0.41 16 13 C -0.05 0.08 2.83 36.00 0.10 0.19 16 14 O -0.53 0.01 12.85 -35.23 -0.45 -0.45 16 15 Si 0.68 -1.47 29.95 -169.99 -5.09 -6.56 16 16 C 0.22 0.13 10.99 -17.23 -0.19 -0.06 16 17 N -0.57 -1.31 10.46 -13.93 -0.15 -1.46 16 18 C -0.14 0.17 7.47 -25.92 -0.19 -0.02 16 19 H 0.10 -0.16 8.14 -51.92 -0.42 -0.58 16 20 H 0.08 -0.12 8.14 -51.93 -0.42 -0.55 16 21 H 0.08 -0.12 8.14 -51.93 -0.42 -0.54 16 22 H 0.11 -0.17 8.10 -51.93 -0.42 -0.59 16 23 H 0.08 -0.16 8.14 -51.93 -0.42 -0.59 16 24 H 0.41 -0.41 8.82 -40.82 -0.36 -0.77 16 25 H 0.17 -0.39 5.01 -52.49 -0.26 -0.66 16 26 H 0.12 -0.30 7.96 -51.93 -0.41 -0.71 16 27 H 0.38 -0.97 8.70 45.56 0.40 -0.57 16 28 H -0.25 -0.33 7.11 56.52 0.40 0.08 16 29 H -0.26 0.09 7.02 56.52 0.40 0.49 16 30 H 0.17 -0.20 8.06 -52.48 -0.42 -0.62 16 31 H 0.07 -0.04 8.14 -51.93 -0.42 -0.46 16 32 H 0.11 -0.13 8.10 -51.93 -0.42 -0.55 16 LS Contribution 286.72 15.07 4.32 4.32 Total: 0.00 -5.56 286.72 -11.44 -16.99 By element: Atomic # 1 Polarization: -3.60 SS G_CDS: -4.02 Total: -7.62 kcal Atomic # 6 Polarization: 1.95 SS G_CDS: -3.23 Total: -1.29 kcal Atomic # 7 Polarization: -2.26 SS G_CDS: -0.57 Total: -2.83 kcal Atomic # 8 Polarization: 0.01 SS G_CDS: -0.45 Total: -0.45 kcal Atomic # 14 Polarization: -1.47 SS G_CDS: -5.09 Total: -6.56 kcal Atomic # 16 Polarization: -0.18 SS G_CDS: -2.38 Total: -2.57 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -5.56 -11.44 -16.99 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12525168_12175864.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.614 kcal (2) G-P(sol) polarization free energy of solvation -5.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.992 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds