Wall clock time and date at job start Mon Mar 8 2021 04:10:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 C 1.81399 * 102.99961 * 2 1 4 4 H 1.09000 * 112.90672 * 43.74632 * 3 2 1 5 5 C 1.53784 * 113.61571 * 175.00012 * 3 2 1 6 6 C 1.53787 * 87.07923 * 139.98070 * 5 3 2 7 7 H 1.08997 * 113.61087 * 219.93398 * 6 5 3 8 8 N 1.46503 * 113.61181 * 89.11654 * 6 5 3 9 9 C 1.38407 * 119.99527 * 154.99607 * 8 6 5 10 10 N 1.32486 * 119.22076 * 359.73084 * 9 8 6 11 11 C 1.32282 * 120.74252 * 179.71080 * 10 9 8 12 12 C 1.38605 * 119.19335 * 0.55298 * 11 10 9 13 13 C 1.50697 * 120.72297 * 179.70190 * 12 11 10 14 14 O 1.42896 * 109.47448 * 245.02371 * 13 12 11 15 15 Si 1.86308 * 109.46744 * 5.02480 * 13 12 11 16 16 C 1.38609 * 118.55785 * 359.72431 * 12 11 10 17 17 N 1.32269 * 119.19957 * 0.02562 * 16 12 11 18 18 C 1.53778 * 87.08035 * 334.56830 * 6 5 3 19 19 H 1.09006 * 109.46656 * 179.97438 * 1 2 3 20 20 H 1.08993 * 109.47409 * 299.99483 * 1 2 3 21 21 H 1.08996 * 109.47246 * 60.00134 * 1 2 3 22 22 H 1.09004 * 113.61451 * 25.43556 * 5 3 2 23 23 H 1.08994 * 113.61477 * 254.52857 * 5 3 2 24 24 H 0.96997 * 119.99779 * 335.00324 * 8 6 5 25 25 H 1.07992 * 120.40636 * 180.30000 * 11 10 9 26 26 H 1.08999 * 109.47509 * 125.02002 * 13 12 11 27 27 H 0.96702 * 114.00268 * 59.99664 * 14 13 12 28 28 H 1.48501 * 109.99895 * 179.97438 * 15 13 12 29 29 H 1.48499 * 109.99912 * 301.31477 * 15 13 12 30 30 H 1.08004 * 120.39881 * 180.02562 * 16 12 11 31 31 H 1.08999 * 113.61111 * 139.98327 * 18 6 5 32 32 H 1.08999 * 113.61280 * 270.79710 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 1 1.6107 2.3440 0.6943 5 6 3.7283 2.0520 0.1228 6 6 3.5205 3.1738 -0.9084 7 1 4.3243 3.2480 -1.6408 8 7 3.1760 4.4655 -0.3090 9 6 3.4567 5.6394 -0.9862 10 7 4.0420 5.5773 -2.1731 11 6 4.3188 6.6802 -2.8491 12 6 3.9994 7.9103 -2.2960 13 6 4.3054 9.1886 -3.0330 14 8 5.2785 9.9382 -2.3029 15 14 4.9734 8.7853 -4.7248 16 6 3.3929 7.9391 -1.0500 17 7 3.1389 6.7990 -0.4294 18 6 2.3007 2.3815 -1.4077 19 1 -0.3633 -1.0278 -0.0005 20 1 -0.3634 0.5137 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 4.3572 1.2382 -0.2382 23 1 4.0255 2.4134 1.1072 24 1 2.7514 4.4978 0.5625 25 1 4.7916 6.6230 -3.8183 26 1 3.3936 9.7774 -3.1334 27 1 6.1175 9.4746 -2.1753 28 1 5.2786 10.0376 -5.4622 29 1 6.1991 7.9559 -4.6024 30 1 3.1308 8.8812 -0.5914 31 1 1.4456 3.0090 -1.6588 32 1 2.5391 1.6589 -2.1880 There are 43 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 43 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_12525168_12175864.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:10:05 Heat of formation + Delta-G solvation = 66.261545 kcal Electronic energy + Delta-G solvation = -16251.808982 eV Core-core repulsion = 13535.010103 eV Total energy + Delta-G solvation = -2716.798879 eV No. of doubly occupied orbitals = 43 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 254.083 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.16380 -40.21947 -38.10589 -35.39947 -34.74519 -32.04569 -29.84832 -27.15720 -26.80499 -26.14258 -25.34807 -23.27570 -20.76219 -19.68530 -18.65870 -18.09326 -17.56302 -16.62644 -16.58381 -16.12803 -15.95338 -15.70623 -15.33532 -15.21912 -14.58813 -14.50865 -14.04952 -14.00901 -13.84650 -13.55245 -13.18627 -12.50699 -12.27500 -12.02114 -11.93196 -11.74084 -11.61300 -11.23372 -10.85153 -10.68978 -10.07037 -9.18879 -8.69578 -4.90194 0.01893 0.11908 0.75239 1.32120 1.58368 1.60674 1.74243 1.98794 2.74526 3.11030 3.35379 3.37630 3.43639 3.62030 3.67720 3.73810 3.76740 3.94119 4.20736 4.28023 4.30249 4.48565 4.64042 4.69177 4.69282 4.71718 4.84610 4.85970 4.90208 5.01049 5.30673 5.74682 5.99818 6.34692 6.49389 7.23159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 S -0.299 6.299 3 C -0.074 4.074 4 H 0.109 0.891 5 C -0.111 4.111 6 C 0.144 3.856 7 H 0.110 0.890 8 N -0.675 5.675 9 C 0.555 3.445 10 N -0.575 5.575 11 C 0.192 3.808 12 C -0.282 4.282 13 C -0.056 4.056 14 O -0.547 6.547 15 Si 0.759 3.241 16 C 0.213 3.787 17 N -0.589 5.589 18 C -0.131 4.131 19 H 0.105 0.895 20 H 0.082 0.918 21 H 0.083 0.917 22 H 0.108 0.892 23 H 0.089 0.911 24 H 0.418 0.582 25 H 0.187 0.813 26 H 0.132 0.868 27 H 0.385 0.615 28 H -0.300 1.300 29 H -0.278 1.278 30 H 0.184 0.816 31 H 0.069 0.931 32 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.787 -0.288 -1.806 2.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.282 4.282 2 S -0.071 6.071 3 C -0.202 4.202 4 H 0.127 0.873 5 C -0.150 4.150 6 C 0.036 3.964 7 H 0.128 0.872 8 N -0.311 5.311 9 C 0.199 3.801 10 N -0.297 5.297 11 C 0.025 3.975 12 C -0.290 4.290 13 C -0.167 4.167 14 O -0.355 6.355 15 Si 0.664 3.336 16 C 0.046 3.954 17 N -0.311 5.311 18 C -0.172 4.172 19 H 0.124 0.876 20 H 0.101 0.899 21 H 0.102 0.898 22 H 0.126 0.874 23 H 0.108 0.892 24 H 0.256 0.744 25 H 0.203 0.797 26 H 0.150 0.850 27 H 0.235 0.765 28 H -0.228 1.228 29 H -0.205 1.205 30 H 0.201 0.799 31 H 0.088 0.912 32 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -1.104 -1.760 -1.881 2.803 hybrid contribution -0.086 1.888 0.930 2.107 sum -1.190 0.128 -0.951 1.529 Atomic orbital electron populations 1.23386 0.92138 1.07128 1.05560 1.87071 1.09955 1.12304 1.97734 1.24803 1.01099 0.92864 1.01466 0.87322 1.23184 0.93396 0.97732 1.00735 1.21736 0.98094 0.80389 0.96167 0.87232 1.43848 1.64829 1.00892 1.21546 1.19566 0.87455 0.86683 0.86442 1.67958 1.19856 1.33347 1.08556 1.23234 0.89756 0.86425 0.98037 1.21698 1.09561 0.97703 1.00028 1.24855 0.96676 0.91339 1.03820 1.86592 1.27443 1.45567 1.75881 0.94251 0.84234 0.79699 0.75432 1.23171 0.86713 0.95690 0.89828 1.67992 1.26703 0.98391 1.38063 1.23736 0.98942 0.98964 0.95575 0.87624 0.89867 0.89837 0.87365 0.89247 0.74383 0.79676 0.85041 0.76547 1.22782 1.20466 0.79939 0.91178 0.87574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.26 10.76 113.37 1.22 1.48 16 2 S -0.30 -0.54 22.18 -56.49 -1.25 -1.79 16 3 C -0.07 0.17 4.15 31.12 0.13 0.29 16 4 H 0.11 -0.36 8.14 -2.39 -0.02 -0.38 16 5 C -0.11 0.36 7.42 31.12 0.23 0.59 16 6 C 0.14 -0.26 4.34 45.52 0.20 -0.07 16 7 H 0.11 -0.01 7.36 -2.39 -0.02 -0.02 16 8 N -0.68 -0.15 5.41 -327.92 -1.77 -1.92 16 9 C 0.56 2.39 8.42 261.49 2.20 4.59 16 10 N -0.57 -2.06 9.13 -197.99 -1.81 -3.87 16 11 C 0.19 -0.11 9.92 84.71 0.84 0.73 16 12 C -0.28 0.42 5.36 -19.69 -0.11 0.31 16 13 C -0.06 0.22 2.83 71.23 0.20 0.42 16 14 O -0.55 0.24 12.85 -148.98 -1.91 -1.67 16 15 Si 0.76 -3.58 29.95 68.60 2.05 -1.52 16 16 C 0.21 0.24 10.99 84.72 0.93 1.17 16 17 N -0.59 -2.87 10.46 -197.98 -2.07 -4.94 16 18 C -0.13 0.30 7.47 31.12 0.23 0.53 16 19 H 0.11 -0.34 8.14 -2.39 -0.02 -0.36 16 20 H 0.08 -0.30 8.14 -2.39 -0.02 -0.32 16 21 H 0.08 -0.28 8.14 -2.39 -0.02 -0.30 16 22 H 0.11 -0.32 8.10 -2.39 -0.02 -0.34 16 23 H 0.09 -0.36 8.14 -2.39 -0.02 -0.38 16 24 H 0.42 -0.72 8.82 -92.71 -0.82 -1.54 16 25 H 0.19 -1.03 5.01 -2.91 -0.01 -1.05 16 26 H 0.13 -0.80 7.96 -2.39 -0.02 -0.82 16 27 H 0.39 -2.09 8.70 -74.06 -0.64 -2.73 16 28 H -0.30 -1.02 7.11 99.48 0.71 -0.31 16 29 H -0.28 0.34 7.02 99.48 0.70 1.04 16 30 H 0.18 -0.47 8.06 -2.91 -0.02 -0.50 16 31 H 0.07 -0.06 8.14 -2.39 -0.02 -0.08 16 32 H 0.11 -0.22 8.10 -2.39 -0.02 -0.24 16 Total: 0.00 -13.02 286.72 -0.97 -13.99 By element: Atomic # 1 Polarization: -8.04 SS G_CDS: -0.29 Total: -8.33 kcal Atomic # 6 Polarization: 3.98 SS G_CDS: 6.08 Total: 10.06 kcal Atomic # 7 Polarization: -5.08 SS G_CDS: -5.65 Total: -10.73 kcal Atomic # 8 Polarization: 0.24 SS G_CDS: -1.91 Total: -1.67 kcal Atomic # 14 Polarization: -3.58 SS G_CDS: 2.05 Total: -1.52 kcal Atomic # 16 Polarization: -0.54 SS G_CDS: -1.25 Total: -1.79 kcal Total: -13.02 -0.97 -13.99 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12525168_12175864.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.249 kcal (2) G-P(sol) polarization free energy of solvation -13.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.988 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds