Wall clock time and date at job start Mon Mar 8 2021 04:10:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 C 1.81399 * 103.00117 * 2 1 4 4 H 1.09005 * 112.84542 * 43.80481 * 3 2 1 5 5 C 1.53781 * 113.61362 * 175.00005 * 3 2 1 6 6 C 1.53785 * 87.08030 * 139.98296 * 5 3 2 7 7 H 1.08996 * 113.61257 * 220.01765 * 6 5 3 8 8 N 1.46504 * 113.61306 * 89.11551 * 6 5 3 9 9 C 1.38609 * 119.99746 * 155.00179 * 8 6 5 10 10 N 1.29691 * 124.94956 * 359.69530 * 9 8 6 11 11 C 1.32123 * 116.86538 * 179.81377 * 10 9 8 12 12 C 1.33324 * 114.57526 * 0.47464 * 11 10 9 13 13 C 1.50701 * 125.94950 * 179.75124 * 12 11 10 14 14 O 1.42905 * 109.46771 * 64.97314 * 13 12 11 15 15 Si 1.86300 * 109.47392 * 184.97159 * 13 12 11 16 16 S 1.70960 * 124.94714 * 179.97438 * 9 8 6 17 17 C 1.53776 * 113.61455 * 272.50250 * 3 2 1 18 18 H 1.09002 * 109.47124 * 299.99830 * 1 2 3 19 19 H 1.09001 * 109.46975 * 179.97438 * 1 2 3 20 20 H 1.09004 * 109.47147 * 59.99914 * 1 2 3 21 21 H 1.08997 * 113.61287 * 254.52852 * 5 3 2 22 22 H 1.08996 * 113.61200 * 25.43680 * 5 3 2 23 23 H 0.96996 * 119.99827 * 334.99353 * 8 6 5 24 24 H 1.07992 * 122.70646 * 180.22148 * 11 10 9 25 25 H 1.09001 * 109.47021 * 304.97634 * 13 12 11 26 26 H 0.96705 * 113.99914 * 180.02562 * 14 13 12 27 27 H 1.48494 * 110.00078 * 178.68000 * 15 13 12 28 28 H 1.48497 * 110.00135 * 300.00294 * 15 13 12 29 29 H 1.09003 * 113.61416 * 334.56249 * 17 3 2 30 30 H 1.08994 * 113.62023 * 105.46677 * 17 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.6110 2.3430 0.6953 5 6 3.7284 2.0519 0.1228 6 6 3.5207 3.1738 -0.9083 7 1 4.3238 3.2470 -1.6416 8 7 3.1763 4.4654 -0.3089 9 6 3.4573 5.6411 -0.9871 10 7 4.0260 5.7099 -2.1506 11 6 4.2148 6.9174 -2.6525 12 6 3.7947 7.9139 -1.8726 13 6 3.8881 9.3844 -2.1888 14 8 3.0679 9.6813 -3.3207 15 14 3.3038 10.3734 -0.7220 16 16 3.1109 7.2122 -0.4086 17 6 2.3008 2.3815 -1.4076 18 1 -0.3633 0.5138 0.8900 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3634 0.5139 -0.8900 21 1 4.0257 2.4133 1.1072 22 1 4.3572 1.2381 -0.2382 23 1 2.7515 4.4978 0.5625 24 1 4.6759 7.0839 -3.6147 25 1 4.9232 9.6430 -2.4123 26 1 3.0798 10.6124 -3.5817 27 1 3.4209 11.8255 -1.0093 28 1 1.8938 10.0300 -0.4071 29 1 2.5394 1.6578 -2.1870 30 1 1.4456 3.0090 -1.6588 There are 41 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 41 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_27_12525168_15704118.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:10:09 Heat of formation + Delta-G solvation = 53.395283 kcal Electronic energy + Delta-G solvation = -14782.799812 eV Core-core repulsion = 12220.021167 eV Total energy + Delta-G solvation = -2562.778645 eV No. of doubly occupied orbitals = 41 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 259.044 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.98298 -39.91322 -37.91627 -35.11699 -31.34085 -29.94172 -27.11131 -26.85811 -26.10196 -24.28968 -21.58308 -20.34090 -19.31386 -18.61328 -17.99953 -17.19624 -16.80465 -16.14349 -15.86732 -15.57487 -15.41450 -15.24516 -14.59397 -14.48972 -14.14976 -13.99040 -13.85165 -13.64457 -12.91386 -12.52498 -12.41995 -12.29644 -12.04961 -11.67452 -11.15501 -10.86041 -10.67861 -10.26145 -10.15877 -8.79989 -8.61995 -5.07993 -0.04528 0.04622 0.69569 0.70387 1.21966 1.51436 1.54682 1.88296 2.02786 2.08343 3.25204 3.27088 3.33659 3.61663 3.64917 3.84319 3.97035 4.15691 4.18577 4.38447 4.40766 4.60352 4.61201 4.73108 4.73715 4.79111 4.83059 4.90946 5.22160 5.83533 6.01624 6.39159 7.01886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 S -0.251 6.251 3 C -0.086 4.086 4 H 0.102 0.898 5 C -0.117 4.117 6 C 0.141 3.859 7 H 0.114 0.886 8 N -0.677 5.677 9 C 0.325 3.675 10 N -0.546 5.546 11 C 0.119 3.881 12 C -0.259 4.259 13 C -0.019 4.019 14 O -0.535 6.535 15 Si 0.650 3.350 16 S 0.098 5.902 17 C -0.140 4.140 18 H 0.076 0.924 19 H 0.101 0.899 20 H 0.077 0.923 21 H 0.085 0.915 22 H 0.108 0.892 23 H 0.414 0.586 24 H 0.176 0.824 25 H 0.085 0.915 26 H 0.381 0.619 27 H -0.241 1.241 28 H -0.239 1.239 29 H 0.105 0.895 30 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.727 1.565 2.684 3.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.291 4.291 2 S -0.023 6.023 3 C -0.215 4.215 4 H 0.121 0.879 5 C -0.156 4.156 6 C 0.032 3.968 7 H 0.132 0.868 8 N -0.316 5.316 9 C -0.045 4.045 10 N -0.271 5.271 11 C -0.032 4.032 12 C -0.381 4.381 13 C -0.132 4.132 14 O -0.342 6.342 15 Si 0.549 3.451 16 S 0.347 5.653 17 C -0.181 4.181 18 H 0.095 0.905 19 H 0.120 0.880 20 H 0.096 0.904 21 H 0.103 0.897 22 H 0.126 0.874 23 H 0.251 0.749 24 H 0.193 0.807 25 H 0.103 0.897 26 H 0.229 0.771 27 H -0.164 1.164 28 H -0.163 1.163 29 H 0.124 0.876 30 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 0.423 0.375 3.611 3.655 hybrid contribution -1.037 1.603 -1.480 2.416 sum -0.614 1.978 2.131 2.972 Atomic orbital electron populations 1.23376 0.94098 1.06652 1.04959 1.86944 1.07601 1.10085 1.97632 1.24813 1.00815 0.94536 1.01332 0.87935 1.23213 0.93607 0.98175 1.00649 1.21829 0.98128 0.80781 0.96099 0.86773 1.43667 1.66113 1.00755 1.21072 1.23649 0.96403 0.91763 0.92726 1.66472 1.23410 1.26655 1.10591 1.21312 0.97522 0.84564 0.99846 1.24332 1.15629 0.99068 0.99105 1.23713 0.97685 0.94558 0.97218 1.86624 1.69536 1.31442 1.46626 0.95213 0.85279 0.81004 0.83619 1.83984 1.61496 0.98275 1.21497 1.23824 0.99451 0.99291 0.95565 0.90524 0.88017 0.90399 0.89679 0.87417 0.74866 0.80709 0.89732 0.77096 1.16430 1.16293 0.87620 0.90631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.12 10.76 101.05 1.09 1.21 16 2 S -0.25 -0.20 22.17 -107.50 -2.38 -2.58 16 3 C -0.09 0.11 4.15 -25.92 -0.11 0.00 16 4 H 0.10 -0.21 8.14 -51.93 -0.42 -0.63 16 5 C -0.12 0.22 7.42 -25.92 -0.19 0.03 16 6 C 0.14 -0.13 4.44 -67.11 -0.30 -0.43 16 7 H 0.11 0.05 7.66 -51.93 -0.40 -0.34 16 8 N -0.68 0.55 5.42 -54.99 -0.30 0.25 16 9 C 0.32 0.50 8.09 -87.68 -0.71 -0.21 16 10 N -0.55 -1.80 9.83 -15.21 -0.15 -1.95 16 11 C 0.12 0.30 11.24 -19.14 -0.22 0.09 16 12 C -0.26 -0.44 5.76 -36.02 -0.21 -0.65 16 13 C -0.02 0.00 2.98 36.01 0.11 0.11 16 14 O -0.53 -0.59 12.86 -35.23 -0.45 -1.04 16 15 Si 0.65 -0.40 31.07 -169.99 -5.28 -5.68 16 16 S 0.10 0.07 20.59 -107.50 -2.21 -2.15 16 17 C -0.14 0.11 7.47 -25.92 -0.19 -0.08 16 18 H 0.08 -0.13 8.14 -51.92 -0.42 -0.55 16 19 H 0.10 -0.15 8.14 -51.92 -0.42 -0.57 16 20 H 0.08 -0.10 8.14 -51.92 -0.42 -0.53 16 21 H 0.08 -0.22 8.14 -51.93 -0.42 -0.64 16 22 H 0.11 -0.17 8.10 -51.93 -0.42 -0.59 16 23 H 0.41 -1.20 8.82 -40.82 -0.36 -1.56 16 24 H 0.18 0.19 8.06 -52.49 -0.42 -0.23 16 25 H 0.08 -0.17 7.96 -51.93 -0.41 -0.58 16 26 H 0.38 -1.18 8.74 45.56 0.40 -0.78 16 27 H -0.24 -0.17 7.11 56.52 0.40 0.23 16 28 H -0.24 -0.59 7.11 56.52 0.40 -0.19 16 29 H 0.11 -0.05 8.10 -51.93 -0.42 -0.47 16 30 H 0.07 0.00 8.14 -51.93 -0.42 -0.43 16 LS Contribution 284.75 15.07 4.29 4.29 Total: 0.00 -5.66 284.75 -10.99 -16.65 By element: Atomic # 1 Polarization: -4.09 SS G_CDS: -3.77 Total: -7.86 kcal Atomic # 6 Polarization: 0.80 SS G_CDS: -0.73 Total: 0.07 kcal Atomic # 7 Polarization: -1.26 SS G_CDS: -0.45 Total: -1.70 kcal Atomic # 8 Polarization: -0.59 SS G_CDS: -0.45 Total: -1.04 kcal Atomic # 14 Polarization: -0.40 SS G_CDS: -5.28 Total: -5.68 kcal Atomic # 16 Polarization: -0.13 SS G_CDS: -4.60 Total: -4.73 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -5.66 -10.99 -16.65 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12525168_15704118.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.046 kcal (2) G-P(sol) polarization free energy of solvation -5.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.651 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds