Wall clock time and date at job start Mon Mar 8 2021 04:10:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 C 1.81399 * 103.00117 * 2 1 4 4 H 1.09005 * 112.84542 * 43.80481 * 3 2 1 5 5 C 1.53781 * 113.61362 * 175.00005 * 3 2 1 6 6 C 1.53785 * 87.08030 * 139.98296 * 5 3 2 7 7 H 1.08996 * 113.61257 * 220.01765 * 6 5 3 8 8 N 1.46504 * 113.61306 * 89.11551 * 6 5 3 9 9 C 1.38609 * 119.99746 * 155.00179 * 8 6 5 10 10 N 1.29691 * 124.94956 * 359.69530 * 9 8 6 11 11 C 1.32123 * 116.86538 * 179.81377 * 10 9 8 12 12 C 1.33324 * 114.57526 * 0.47464 * 11 10 9 13 13 C 1.50701 * 125.94950 * 179.75124 * 12 11 10 14 14 O 1.42905 * 109.46771 * 64.97314 * 13 12 11 15 15 Si 1.86300 * 109.47392 * 184.97159 * 13 12 11 16 16 S 1.70960 * 124.94714 * 179.97438 * 9 8 6 17 17 C 1.53776 * 113.61455 * 272.50250 * 3 2 1 18 18 H 1.09002 * 109.47124 * 299.99830 * 1 2 3 19 19 H 1.09001 * 109.46975 * 179.97438 * 1 2 3 20 20 H 1.09004 * 109.47147 * 59.99914 * 1 2 3 21 21 H 1.08997 * 113.61287 * 254.52852 * 5 3 2 22 22 H 1.08996 * 113.61200 * 25.43680 * 5 3 2 23 23 H 0.96996 * 119.99827 * 334.99353 * 8 6 5 24 24 H 1.07992 * 122.70646 * 180.22148 * 11 10 9 25 25 H 1.09001 * 109.47021 * 304.97634 * 13 12 11 26 26 H 0.96705 * 113.99914 * 180.02562 * 14 13 12 27 27 H 1.48494 * 110.00078 * 178.68000 * 15 13 12 28 28 H 1.48497 * 110.00135 * 300.00294 * 15 13 12 29 29 H 1.09003 * 113.61416 * 334.56249 * 17 3 2 30 30 H 1.08994 * 113.62023 * 105.46677 * 17 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.6110 2.3430 0.6953 5 6 3.7284 2.0519 0.1228 6 6 3.5207 3.1738 -0.9083 7 1 4.3238 3.2470 -1.6416 8 7 3.1763 4.4654 -0.3089 9 6 3.4573 5.6411 -0.9871 10 7 4.0260 5.7099 -2.1506 11 6 4.2148 6.9174 -2.6525 12 6 3.7947 7.9139 -1.8726 13 6 3.8881 9.3844 -2.1888 14 8 3.0679 9.6813 -3.3207 15 14 3.3038 10.3734 -0.7220 16 16 3.1109 7.2122 -0.4086 17 6 2.3008 2.3815 -1.4076 18 1 -0.3633 0.5138 0.8900 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3634 0.5139 -0.8900 21 1 4.0257 2.4133 1.1072 22 1 4.3572 1.2381 -0.2382 23 1 2.7515 4.4978 0.5625 24 1 4.6759 7.0839 -3.6147 25 1 4.9232 9.6430 -2.4123 26 1 3.0798 10.6124 -3.5817 27 1 3.4209 11.8255 -1.0093 28 1 1.8938 10.0300 -0.4071 29 1 2.5394 1.6578 -2.1870 30 1 1.4456 3.0090 -1.6588 There are 41 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 41 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_27_12525168_15704118.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 04:10:09 Heat of formation + Delta-G solvation = 56.991847 kcal Electronic energy + Delta-G solvation = -14782.643853 eV Core-core repulsion = 12220.021167 eV Total energy + Delta-G solvation = -2562.622686 eV No. of doubly occupied orbitals = 41 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 259.044 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.01594 -39.92230 -37.92943 -35.11954 -31.39084 -29.85912 -27.11979 -26.78793 -26.10879 -24.32588 -21.58796 -20.36995 -19.32752 -18.61717 -18.01870 -17.22500 -16.75236 -16.16920 -15.91162 -15.59087 -15.39634 -15.26135 -14.55273 -14.50091 -14.07519 -14.02419 -13.81904 -13.55928 -12.94440 -12.54218 -12.47897 -12.34484 -11.98738 -11.62441 -11.15672 -10.84785 -10.71447 -10.31077 -10.23350 -8.84199 -8.66293 -5.04065 -0.11754 -0.01046 0.63015 0.74556 1.23152 1.52450 1.59561 1.87585 1.93534 2.09890 3.31536 3.34596 3.42565 3.60638 3.70626 3.91456 3.97508 4.27090 4.29064 4.45905 4.47462 4.66109 4.68287 4.71783 4.79919 4.83739 4.89025 4.93593 5.19291 5.80938 6.10433 6.58844 6.97151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 S -0.300 6.300 3 C -0.072 4.072 4 H 0.115 0.885 5 C -0.107 4.107 6 C 0.144 3.856 7 H 0.100 0.900 8 N -0.668 5.668 9 C 0.317 3.683 10 N -0.574 5.574 11 C 0.102 3.898 12 C -0.269 4.269 13 C -0.026 4.026 14 O -0.557 6.557 15 Si 0.717 3.283 16 S 0.116 5.884 17 C -0.136 4.136 18 H 0.085 0.915 19 H 0.104 0.896 20 H 0.080 0.920 21 H 0.098 0.902 22 H 0.105 0.895 23 H 0.425 0.575 24 H 0.181 0.819 25 H 0.108 0.892 26 H 0.397 0.603 27 H -0.256 1.256 28 H -0.283 1.283 29 H 0.100 0.900 30 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.784 2.028 3.333 3.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.282 4.282 2 S -0.072 6.072 3 C -0.201 4.201 4 H 0.133 0.867 5 C -0.147 4.147 6 C 0.034 3.966 7 H 0.118 0.882 8 N -0.308 5.308 9 C -0.054 4.054 10 N -0.300 5.300 11 C -0.048 4.048 12 C -0.392 4.392 13 C -0.138 4.138 14 O -0.367 6.367 15 Si 0.619 3.381 16 S 0.366 5.634 17 C -0.178 4.178 18 H 0.104 0.896 19 H 0.123 0.877 20 H 0.099 0.901 21 H 0.116 0.884 22 H 0.123 0.877 23 H 0.264 0.736 24 H 0.198 0.802 25 H 0.126 0.874 26 H 0.248 0.752 27 H -0.180 1.180 28 H -0.210 1.210 29 H 0.118 0.882 30 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.491 0.839 4.267 4.377 hybrid contribution -1.107 1.471 -1.700 2.506 sum -0.616 2.310 2.567 3.508 Atomic orbital electron populations 1.23388 0.92159 1.07111 1.05555 1.87103 1.09931 1.12454 1.97722 1.24816 1.01310 0.92826 1.01114 0.86718 1.23165 0.93197 0.97432 1.00899 1.21743 0.97655 0.80935 0.96295 0.88187 1.43689 1.65625 1.00167 1.21280 1.23854 0.96170 0.92712 0.92638 1.66471 1.24602 1.27327 1.11588 1.21482 0.98200 0.84718 1.00427 1.24630 1.15277 0.99889 0.99393 1.23936 0.98964 0.93623 0.97311 1.86575 1.69923 1.33191 1.47033 0.94457 0.82230 0.79169 0.82234 1.83858 1.61136 0.97528 1.20924 1.23763 0.99143 0.99053 0.95843 0.89619 0.87685 0.90065 0.88401 0.87658 0.73579 0.80183 0.87429 0.75187 1.18021 1.20968 0.88176 0.91284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.26 10.76 113.37 1.22 1.47 16 2 S -0.30 -0.55 22.17 -56.49 -1.25 -1.80 16 3 C -0.07 0.20 4.15 31.12 0.13 0.33 16 4 H 0.11 -0.58 8.14 -2.38 -0.02 -0.60 16 5 C -0.11 0.43 7.42 31.12 0.23 0.66 16 6 C 0.14 -0.22 4.44 45.52 0.20 -0.02 16 7 H 0.10 0.19 7.66 -2.39 -0.02 0.17 16 8 N -0.67 1.15 5.42 -327.87 -1.78 -0.63 16 9 C 0.32 1.07 8.09 179.32 1.45 2.52 16 10 N -0.57 -4.23 9.83 -202.03 -1.99 -6.22 16 11 C 0.10 0.58 11.24 83.54 0.94 1.52 16 12 C -0.27 -0.95 5.76 24.57 0.14 -0.81 16 13 C -0.03 0.01 2.98 71.24 0.21 0.22 16 14 O -0.56 -1.13 12.86 -148.98 -1.92 -3.05 16 15 Si 0.72 -1.06 31.07 68.60 2.13 1.07 16 16 S 0.12 0.17 20.59 -56.49 -1.16 -1.00 16 17 C -0.14 0.17 7.47 31.12 0.23 0.40 16 18 H 0.08 -0.35 8.14 -2.39 -0.02 -0.36 16 19 H 0.10 -0.32 8.14 -2.39 -0.02 -0.34 16 20 H 0.08 -0.23 8.14 -2.39 -0.02 -0.25 16 21 H 0.10 -0.61 8.14 -2.39 -0.02 -0.63 16 22 H 0.11 -0.31 8.10 -2.39 -0.02 -0.33 16 23 H 0.42 -2.76 8.82 -92.71 -0.82 -3.57 16 24 H 0.18 0.56 8.06 -2.91 -0.02 0.53 16 25 H 0.11 -0.55 7.96 -2.39 -0.02 -0.57 16 26 H 0.40 -2.61 8.74 -74.05 -0.65 -3.26 16 27 H -0.26 -0.22 7.11 99.48 0.71 0.48 16 28 H -0.28 -1.64 7.11 99.48 0.71 -0.93 16 29 H 0.10 0.00 8.10 -2.39 -0.02 -0.02 16 30 H 0.07 0.02 8.14 -2.39 -0.02 0.00 16 Total: 0.00 -13.53 284.75 -1.47 -15.00 By element: Atomic # 1 Polarization: -9.40 SS G_CDS: -0.27 Total: -9.67 kcal Atomic # 6 Polarization: 1.54 SS G_CDS: 4.76 Total: 6.29 kcal Atomic # 7 Polarization: -3.09 SS G_CDS: -3.76 Total: -6.85 kcal Atomic # 8 Polarization: -1.13 SS G_CDS: -1.92 Total: -3.05 kcal Atomic # 14 Polarization: -1.06 SS G_CDS: 2.13 Total: 1.07 kcal Atomic # 16 Polarization: -0.38 SS G_CDS: -2.42 Total: -2.80 kcal Total: -13.53 -1.47 -15.00 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_27_12525168_15704118.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.996 kcal (2) G-P(sol) polarization free energy of solvation -13.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.004 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds